Wall clock time and date at job start Tue Mar 31 2020 18:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47373 * 2 1 4 4 N 1.46509 * 109.46968 * 119.99798 * 2 1 3 5 5 C 1.34779 * 119.99711 * 275.00296 * 4 2 1 6 6 O 1.21590 * 119.99959 * 359.97438 * 5 4 2 7 7 C 1.47521 * 119.99606 * 179.97438 * 5 4 2 8 8 N 1.34396 * 125.77323 * 359.97438 * 7 5 4 9 9 N 1.28761 * 109.52683 * 179.97438 * 8 7 5 10 10 N 1.40213 * 108.36271 * 359.97438 * 9 8 7 11 11 C 1.46506 * 126.59093 * 179.97438 * 10 9 8 12 12 C 1.34812 * 106.81518 * 0.22517 * 10 9 8 13 13 C 1.50697 * 126.58345 * 179.77314 * 12 10 9 14 14 F 1.39897 * 109.47109 * 30.02599 * 13 12 10 15 15 F 1.39903 * 109.47148 * 150.02263 * 13 12 10 16 16 F 1.39896 * 109.47415 * 270.02564 * 13 12 10 17 17 C 1.53002 * 109.47253 * 239.99558 * 2 1 3 18 18 H 1.09005 * 109.46702 * 300.00168 * 17 2 1 19 19 C 1.53000 * 109.47090 * 180.02562 * 17 2 1 20 20 N 1.46495 * 109.47027 * 60.00179 * 17 2 1 21 21 C 1.36940 * 120.00299 * 204.99926 * 20 17 2 22 22 H 1.08002 * 119.99576 * 0.02562 * 21 20 17 23 23 C 1.38814 * 120.00179 * 180.02562 * 21 20 17 24 24 N 1.31617 * 119.99712 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99682 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46913 * 60.00117 * 25 23 21 27 27 H 1.48502 * 109.46552 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47136 * 299.99997 * 25 23 21 29 29 H 1.09004 * 109.46843 * 60.00297 * 1 2 3 30 30 H 1.08998 * 109.47798 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47311 * 300.00874 * 1 2 3 32 32 H 0.96994 * 119.99788 * 94.99596 * 4 2 1 33 33 H 1.09001 * 109.47060 * 90.02961 * 11 10 9 34 34 H 1.09004 * 109.47073 * 210.02449 * 11 10 9 35 35 H 1.09000 * 109.47212 * 330.02532 * 11 10 9 36 36 H 1.09001 * 109.46755 * 300.00121 * 19 17 2 37 37 H 1.08998 * 109.47299 * 59.99489 * 19 17 2 38 38 H 1.08996 * 109.47104 * 180.02562 * 19 17 2 39 39 H 0.97004 * 119.99739 * 25.00377 * 20 17 2 40 40 H 0.97006 * 119.99237 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1617 2.4116 7 6 2.6381 -0.7137 3.5619 8 7 2.9886 -2.0092 3.6331 9 7 3.3713 -2.2863 4.8309 10 7 3.2752 -1.1218 5.6058 11 6 3.6099 -0.9876 7.0258 12 6 2.8101 -0.1507 4.7946 13 6 2.5353 1.2816 5.1740 14 9 3.4054 1.6676 6.1992 15 9 2.7324 2.1051 4.0604 16 9 1.2130 1.4018 5.6147 17 6 2.0400 -0.7213 -1.2492 18 1 1.6766 -1.7490 -1.2491 19 6 3.5700 -0.7219 -1.2488 20 7 1.5517 -0.0308 -2.4454 21 6 1.4209 -0.7140 -3.6250 22 1 1.6774 -1.7620 -3.6733 23 6 0.9588 -0.0595 -4.7585 24 7 0.6467 1.2178 -4.6997 25 14 0.7798 -0.9917 -6.3674 26 1 -0.1764 -2.1133 -6.1858 27 1 0.2721 -0.0729 -7.4179 28 1 2.1018 -1.5296 -6.7776 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.2489 -1.6317 1.1527 33 1 4.6584 -0.7071 7.1270 34 1 2.9829 -0.2179 7.4758 35 1 3.4376 -1.9379 7.5311 36 1 3.9336 0.3057 -1.2486 37 1 3.9330 -1.2358 -0.3588 38 1 3.9333 -1.2354 -2.1390 39 1 1.3211 0.9104 -2.4018 40 1 0.3241 1.6752 -5.4920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329148248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:33 Heat of formation + Delta-G solvation = -65.496587 kcal Electronic energy + Delta-G solvation = -29821.760793 eV Core-core repulsion = 25067.069830 eV Total energy + Delta-G solvation = -4754.690963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.58640 -48.19373 -47.88845 -42.89299 -39.58797 -36.76680 -35.44939 -33.94867 -32.39845 -31.70184 -29.73625 -28.50342 -28.25938 -26.87155 -24.31818 -23.95732 -22.76758 -22.11537 -20.62631 -20.10445 -19.01365 -18.98127 -18.63752 -17.87215 -17.36308 -16.84621 -16.01524 -15.76156 -15.09902 -14.99857 -14.73759 -14.59755 -14.51233 -14.31768 -14.24528 -14.02184 -13.88672 -13.76453 -13.59983 -13.44148 -13.27277 -13.01098 -12.41856 -12.36416 -11.94368 -11.84472 -11.67525 -11.16270 -11.12181 -10.94102 -10.80543 -10.66266 -10.22989 -10.10175 -9.98087 -9.87086 -9.66201 -9.02450 -8.78567 -6.97591 -5.75893 -3.05406 0.13782 1.09294 1.20797 2.00881 2.94938 3.02360 3.07625 3.41329 3.45159 3.49855 3.50621 3.74987 3.82695 3.99363 4.35589 4.39102 4.60974 4.65105 4.73509 5.11411 5.32096 5.43309 5.50762 5.69151 5.76446 5.91349 6.13839 6.20166 6.39558 6.44111 6.54163 6.62659 6.83619 6.92197 7.04610 7.18722 7.59240 7.70259 8.16368 8.41800 9.53229 10.08169 10.43474 11.46417 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.002659 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.971432 B =10526.112852 C =11123.520456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.090 0.910 4 N -0.692 5.692 5 C 0.588 3.412 6 O -0.516 6.516 7 C -0.023 4.023 8 N -0.198 5.198 9 N -0.026 5.026 10 N -0.327 5.327 11 C 0.076 3.924 12 C 0.002 3.998 13 C 0.545 3.455 14 F -0.176 7.176 15 F -0.120 7.120 16 F -0.161 7.161 17 C 0.169 3.831 18 H 0.052 0.948 19 C -0.166 4.166 20 N -0.717 5.717 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.406 0.594 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.386 0.614 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -3.313 27.454 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.108 0.892 4 N -0.343 5.343 5 C 0.369 3.631 6 O -0.390 6.390 7 C -0.165 4.165 8 N -0.069 5.069 9 N -0.007 5.007 10 N -0.114 5.114 11 C -0.064 4.064 12 C -0.138 4.138 13 C 0.488 3.512 14 F -0.157 7.157 15 F -0.101 7.101 16 F -0.142 7.142 17 C 0.058 3.942 18 H 0.070 0.930 19 C -0.226 4.226 20 N -0.359 5.359 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.241 0.759 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.220 0.780 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.978 -4.022 27.348 28.282 hybrid contribution -0.180 0.433 -0.573 0.740 sum 5.799 -3.589 26.776 27.630 Atomic orbital electron populations 1.22063 0.94535 1.02002 1.02537 1.21482 0.94704 0.97708 0.82996 0.89182 1.45873 1.65028 1.14404 1.08960 1.16688 0.78786 0.85976 0.81618 1.90934 1.50103 1.13973 1.84009 1.21610 1.09079 0.91007 0.94779 1.74773 1.08741 1.12001 1.11407 1.82107 1.19644 1.02722 0.96185 1.50318 1.42335 1.07071 1.11686 1.22538 1.04094 1.06305 0.73483 1.21660 1.06477 0.92244 0.93380 1.16905 0.74953 0.83584 0.75748 1.93218 1.69863 1.92262 1.60397 1.93493 1.94404 1.72326 1.49849 1.93285 1.35182 1.96253 1.89457 1.20388 0.92190 0.95666 0.85942 0.92960 1.22458 0.98968 1.01153 1.00000 1.42274 1.78229 1.10677 1.04757 1.19148 1.36888 0.93857 0.87080 0.91177 1.24733 1.02050 0.95961 0.98022 1.69654 1.50648 1.08588 1.29019 0.86275 0.77750 0.78591 0.83583 1.21276 1.21742 1.21322 0.89836 0.92910 0.93298 0.75856 0.87947 0.88017 0.86906 0.93371 0.94455 0.92561 0.78011 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.33 37.16 0.35 -2.28 16 2 C 0.14 2.30 2.21 -67.93 -0.15 2.15 16 3 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 4 N -0.69 -10.07 4.38 -54.85 -0.24 -10.31 16 5 C 0.59 8.81 7.73 -12.48 -0.10 8.71 16 6 O -0.52 -8.88 12.70 5.29 0.07 -8.81 16 7 C -0.02 -0.30 6.97 -83.55 -0.58 -0.88 16 8 N -0.20 -2.48 12.04 32.85 0.40 -2.08 16 9 N -0.03 -0.29 13.78 60.35 0.83 0.54 16 10 N -0.33 -2.84 4.03 -63.58 -0.26 -3.10 16 11 C 0.08 0.26 10.52 59.85 0.63 0.89 16 12 C 0.00 0.02 6.46 -81.88 -0.53 -0.51 16 13 C 0.55 5.79 3.15 36.00 0.11 5.90 16 14 F -0.18 -1.44 15.30 2.25 0.03 -1.41 16 15 F -0.12 -1.63 13.40 2.25 0.03 -1.60 16 16 F -0.16 -1.74 17.30 2.25 0.04 -1.70 16 17 C 0.17 3.22 2.52 -67.93 -0.17 3.05 16 18 H 0.05 0.99 8.08 -51.93 -0.42 0.58 16 19 C -0.17 -2.96 9.34 37.16 0.35 -2.62 16 20 N -0.72 -17.30 4.43 -53.42 -0.24 -17.54 16 21 C -0.24 -6.43 9.93 -15.06 -0.15 -6.57 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 25 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.08 1.62 7.45 -51.93 -0.39 1.23 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 5.27 8.07 -40.82 -0.33 4.94 16 33 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.10 0.23 7.07 -51.93 -0.37 -0.13 16 35 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.56 7.44 -51.93 -0.39 0.18 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.39 9.98 7.58 -40.82 -0.31 9.67 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -31.85 353.20 -3.32 -35.17 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.67 Total: 7.94 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.34 Total: 7.43 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 1.22 Total: -59.47 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.10 Total: -4.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.85 -3.32 -35.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329148248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.327 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds