Wall clock time and date at job start Tue Mar 31 2020 18:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47373 * 2 1 4 4 N 1.46509 * 109.46968 * 119.99798 * 2 1 3 5 5 C 1.34779 * 119.99711 * 275.00296 * 4 2 1 6 6 O 1.21590 * 119.99959 * 359.97438 * 5 4 2 7 7 C 1.47521 * 119.99606 * 179.97438 * 5 4 2 8 8 N 1.34396 * 125.77323 * 359.97438 * 7 5 4 9 9 N 1.28761 * 109.52683 * 179.97438 * 8 7 5 10 10 N 1.40213 * 108.36271 * 359.97438 * 9 8 7 11 11 C 1.46506 * 126.59093 * 179.97438 * 10 9 8 12 12 C 1.34812 * 106.81518 * 0.22517 * 10 9 8 13 13 C 1.50697 * 126.58345 * 179.77314 * 12 10 9 14 14 F 1.39897 * 109.47109 * 30.02599 * 13 12 10 15 15 F 1.39903 * 109.47148 * 150.02263 * 13 12 10 16 16 F 1.39896 * 109.47415 * 270.02564 * 13 12 10 17 17 C 1.53002 * 109.47253 * 239.99558 * 2 1 3 18 18 H 1.09005 * 109.46702 * 300.00168 * 17 2 1 19 19 C 1.53000 * 109.47090 * 180.02562 * 17 2 1 20 20 N 1.46495 * 109.47027 * 60.00179 * 17 2 1 21 21 C 1.36940 * 120.00299 * 204.99926 * 20 17 2 22 22 H 1.08002 * 119.99576 * 0.02562 * 21 20 17 23 23 C 1.38814 * 120.00179 * 180.02562 * 21 20 17 24 24 N 1.31617 * 119.99712 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99682 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46913 * 60.00117 * 25 23 21 27 27 H 1.48502 * 109.46552 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47136 * 299.99997 * 25 23 21 29 29 H 1.09004 * 109.46843 * 60.00297 * 1 2 3 30 30 H 1.08998 * 109.47798 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47311 * 300.00874 * 1 2 3 32 32 H 0.96994 * 119.99788 * 94.99596 * 4 2 1 33 33 H 1.09001 * 109.47060 * 90.02961 * 11 10 9 34 34 H 1.09004 * 109.47073 * 210.02449 * 11 10 9 35 35 H 1.09000 * 109.47212 * 330.02532 * 11 10 9 36 36 H 1.09001 * 109.46755 * 300.00121 * 19 17 2 37 37 H 1.08998 * 109.47299 * 59.99489 * 19 17 2 38 38 H 1.08996 * 109.47104 * 180.02562 * 19 17 2 39 39 H 0.97004 * 119.99739 * 25.00377 * 20 17 2 40 40 H 0.97006 * 119.99237 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1617 2.4116 7 6 2.6381 -0.7137 3.5619 8 7 2.9886 -2.0092 3.6331 9 7 3.3713 -2.2863 4.8309 10 7 3.2752 -1.1218 5.6058 11 6 3.6099 -0.9876 7.0258 12 6 2.8101 -0.1507 4.7946 13 6 2.5353 1.2816 5.1740 14 9 3.4054 1.6676 6.1992 15 9 2.7324 2.1051 4.0604 16 9 1.2130 1.4018 5.6147 17 6 2.0400 -0.7213 -1.2492 18 1 1.6766 -1.7490 -1.2491 19 6 3.5700 -0.7219 -1.2488 20 7 1.5517 -0.0308 -2.4454 21 6 1.4209 -0.7140 -3.6250 22 1 1.6774 -1.7620 -3.6733 23 6 0.9588 -0.0595 -4.7585 24 7 0.6467 1.2178 -4.6997 25 14 0.7798 -0.9917 -6.3674 26 1 -0.1764 -2.1133 -6.1858 27 1 0.2721 -0.0729 -7.4179 28 1 2.1018 -1.5296 -6.7776 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.2489 -1.6317 1.1527 33 1 4.6584 -0.7071 7.1270 34 1 2.9829 -0.2179 7.4758 35 1 3.4376 -1.9379 7.5311 36 1 3.9336 0.3057 -1.2486 37 1 3.9330 -1.2358 -0.3588 38 1 3.9333 -1.2354 -2.1390 39 1 1.3211 0.9104 -2.4018 40 1 0.3241 1.6752 -5.4920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329148248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:33 Heat of formation + Delta-G solvation = -88.432615 kcal Electronic energy + Delta-G solvation = -29822.755374 eV Core-core repulsion = 25067.069830 eV Total energy + Delta-G solvation = -4755.685544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.41860 -48.97811 -48.80579 -43.73728 -40.83065 -38.28242 -36.19246 -35.58292 -33.63150 -33.12730 -31.13376 -30.12414 -29.09259 -27.67380 -25.89076 -25.40261 -23.99597 -23.04406 -21.77207 -21.55965 -19.88901 -19.83854 -19.53231 -19.27942 -18.85053 -17.63857 -17.17745 -16.88752 -16.45196 -16.13313 -15.84324 -15.64665 -15.52778 -15.34136 -15.27894 -15.04305 -14.97767 -14.87322 -14.72370 -14.61854 -14.32257 -14.06167 -14.03334 -13.45716 -13.18549 -13.15449 -12.90138 -12.71900 -12.68956 -12.56002 -12.24357 -12.18157 -11.81761 -11.71775 -11.45691 -11.27367 -10.94793 -10.84911 -10.15703 -8.98565 -7.88924 -5.17620 -0.69406 0.25330 0.36368 1.24436 1.51133 1.53534 1.59284 1.84050 1.93973 2.20822 2.58376 2.61011 2.92808 2.99677 3.12330 3.45017 3.53184 3.79186 3.99687 4.07014 4.17174 4.21802 4.36736 4.39571 4.51435 4.62020 4.78619 4.80601 4.90698 4.97248 5.06447 5.16552 5.34881 5.46989 5.53023 5.58818 6.22859 6.31869 6.49787 7.00194 7.38746 8.11594 8.35588 9.34269 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.002659 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.971432 B =10526.112852 C =11123.520456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.151 3.849 3 H 0.072 0.928 4 N -0.685 5.685 5 C 0.590 3.410 6 O -0.541 6.541 7 C -0.042 4.042 8 N -0.210 5.210 9 N -0.031 5.031 10 N -0.306 5.306 11 C 0.058 3.942 12 C 0.005 3.995 13 C 0.550 3.450 14 F -0.158 7.158 15 F -0.140 7.140 16 F -0.162 7.162 17 C 0.168 3.832 18 H 0.060 0.940 19 C -0.156 4.156 20 N -0.728 5.728 21 C -0.233 4.233 22 H 0.079 0.921 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.970 3.030 26 H -0.278 1.278 27 H -0.300 1.300 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.416 0.584 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.373 0.627 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -4.956 29.645 30.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.046 3.954 3 H 0.090 0.910 4 N -0.336 5.336 5 C 0.373 3.627 6 O -0.418 6.418 7 C -0.184 4.184 8 N -0.081 5.081 9 N -0.012 5.012 10 N -0.093 5.093 11 C -0.080 4.080 12 C -0.137 4.137 13 C 0.493 3.507 14 F -0.140 7.140 15 F -0.121 7.121 16 F -0.143 7.143 17 C 0.059 3.941 18 H 0.078 0.922 19 C -0.215 4.215 20 N -0.369 5.369 21 C -0.365 4.365 22 H 0.097 0.903 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.799 3.201 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.253 0.747 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.155 0.845 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.206 0.794 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.913 -5.736 29.609 30.942 hybrid contribution -0.390 0.917 -1.011 1.420 sum 6.523 -4.819 28.598 29.726 Atomic orbital electron populations 1.21942 0.94603 1.02258 1.01427 1.21054 0.94469 0.96673 0.83236 0.90987 1.45646 1.65088 1.14695 1.08207 1.16897 0.78087 0.85682 0.82069 1.90925 1.51146 1.15160 1.84528 1.21254 1.11006 0.91534 0.94631 1.74746 1.09299 1.11756 1.12319 1.82040 1.19701 1.03451 0.95978 1.50681 1.40026 1.05665 1.12915 1.23150 1.05771 1.08433 0.70640 1.21604 1.06251 0.92591 0.93206 1.16796 0.75128 0.83174 0.75584 1.93251 1.69226 1.92096 1.59390 1.93453 1.94532 1.72917 1.51162 1.93283 1.35393 1.96232 1.89381 1.20537 0.92909 0.95631 0.85024 0.92183 1.22308 0.97605 1.00718 1.00908 1.42427 1.78451 1.10262 1.05740 1.19539 1.34825 0.94227 0.87910 0.90326 1.25502 1.03080 0.96805 1.01295 1.69817 1.52633 1.10164 1.29367 0.85265 0.77869 0.77307 0.79622 1.20368 1.22622 1.20600 0.92456 0.91906 0.92813 0.74705 0.85709 0.86492 0.84458 0.94485 0.91341 0.93754 0.79439 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.33 71.98 0.67 -4.29 16 2 C 0.15 5.13 2.21 44.99 0.10 5.23 16 3 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 4 N -0.69 -19.35 4.38 -445.71 -1.95 -21.31 16 5 C 0.59 17.32 7.73 86.69 0.67 17.99 16 6 O -0.54 -18.68 12.70 -4.00 -0.05 -18.73 16 7 C -0.04 -1.03 6.97 40.82 0.28 -0.75 16 8 N -0.21 -4.93 12.04 -49.99 -0.60 -5.53 16 9 N -0.03 -0.61 13.78 37.02 0.51 -0.10 16 10 N -0.31 -4.49 4.03 -355.08 -1.43 -5.93 16 11 C 0.06 0.19 10.52 127.77 1.34 1.53 16 12 C 0.00 0.09 6.46 41.72 0.27 0.36 16 13 C 0.55 10.85 3.15 71.23 0.22 11.08 16 14 F -0.16 -2.21 15.30 44.97 0.69 -1.52 16 15 F -0.14 -3.73 13.40 44.97 0.60 -3.13 16 16 F -0.16 -3.27 17.30 44.97 0.78 -2.49 16 17 C 0.17 6.34 2.52 44.99 0.11 6.46 16 18 H 0.06 2.20 8.08 -2.38 -0.02 2.18 16 19 C -0.16 -5.42 9.34 71.98 0.67 -4.75 16 20 N -0.73 -35.54 4.43 -322.94 -1.43 -36.97 16 21 C -0.23 -12.55 9.93 84.03 0.83 -11.72 16 22 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 23 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 24 N -0.97 -59.02 13.06 21.65 0.28 -58.73 16 25 Si 0.97 45.80 29.55 68.60 2.03 47.82 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 29 H 0.06 2.28 7.45 -2.39 -0.02 2.26 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.42 10.18 8.07 -92.71 -0.75 9.43 16 33 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.12 0.10 7.07 -2.38 -0.02 0.09 16 35 H 0.14 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.94 7.44 -2.39 -0.02 1.93 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.37 19.94 7.58 -92.71 -0.70 19.24 16 40 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -69.18 353.20 4.74 -64.44 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.33 Total: 24.80 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 5.65 Total: 17.38 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -4.62 Total: -128.57 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 2.07 Total: -7.14 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -69.18 4.74 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329148248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.997 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds