Wall clock time and date at job start Tue Mar 31 2020 18:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 H 1.08998 * 109.47187 * 174.99859 * 13 2 1 15 15 C 1.53001 * 109.47314 * 294.99899 * 13 2 1 16 16 N 1.46500 * 109.47037 * 55.00170 * 13 2 1 17 17 C 1.34776 * 120.00386 * 154.99951 * 16 13 2 18 18 O 1.21600 * 119.99748 * 359.97438 * 17 16 13 19 19 C 1.47523 * 120.00300 * 179.97438 * 17 16 13 20 20 N 1.34396 * 125.76935 * 0.03190 * 19 17 16 21 21 N 1.28761 * 109.52153 * 179.97438 * 20 19 17 22 22 N 1.40209 * 108.36941 * 359.97438 * 21 20 19 23 23 C 1.46498 * 126.59572 * 179.97438 * 22 21 20 24 24 C 1.34816 * 106.81033 * 359.78267 * 22 21 20 25 25 C 1.50697 * 126.57980 * 180.21796 * 24 22 21 26 26 F 1.39891 * 109.47671 * 30.15952 * 25 24 22 27 27 F 1.39904 * 109.46924 * 150.16493 * 25 24 22 28 28 F 1.39908 * 109.46807 * 270.15665 * 25 24 22 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 33 33 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47005 * 60.00407 * 15 13 2 35 35 H 1.09004 * 109.47050 * 179.97438 * 15 13 2 36 36 H 1.08998 * 109.47150 * 300.00000 * 15 13 2 37 37 H 0.96999 * 120.00147 * 334.99483 * 16 13 2 38 38 H 1.09000 * 109.47041 * 89.98253 * 23 22 21 39 39 H 1.09005 * 109.47301 * 209.97964 * 23 22 21 40 40 H 1.09001 * 109.47601 * 329.98381 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 1.4868 0.8110 5.5294 11 1 3.3224 -0.6423 6.1623 12 1 3.7614 1.3974 4.9269 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.6444 -1.2951 15 6 1.6352 -2.1955 -1.1879 16 7 1.4558 -0.1037 -2.4423 17 6 2.0912 -0.1938 -3.6275 18 8 3.1495 -0.7873 -3.7064 19 6 1.5027 0.4277 -4.8291 20 7 0.3448 1.1085 -4.8744 21 7 0.1309 1.5141 -6.0776 22 7 1.1958 1.0872 -6.8836 23 6 1.3563 1.3301 -8.3194 24 6 2.0456 0.4138 -6.0825 25 6 3.3436 -0.2332 -6.4919 26 9 3.9015 0.4762 -7.5608 27 9 4.2314 -0.2223 -5.4108 28 9 3.1027 -1.5544 -6.8842 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1526 33 1 3.2629 -2.3923 4.2382 34 1 0.5489 -2.2724 -1.1421 35 1 1.9982 -2.7093 -2.0781 36 1 2.0699 -2.6550 -0.3002 37 1 0.6117 0.3701 -2.3794 38 1 1.8998 2.2626 -8.4716 39 1 1.9139 0.5073 -8.7670 40 1 0.3747 1.4012 -8.7880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329148249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:37 Heat of formation + Delta-G solvation = -61.280789 kcal Electronic energy + Delta-G solvation = -29819.347303 eV Core-core repulsion = 25064.839150 eV Total energy + Delta-G solvation = -4754.508152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.58380 -48.19108 -47.88678 -42.89417 -39.61980 -36.93903 -35.45061 -33.92574 -32.40136 -31.73956 -29.59683 -28.38805 -28.17258 -26.88032 -24.61766 -24.12591 -23.00053 -22.22149 -20.78571 -19.40602 -19.00769 -18.90005 -18.61940 -17.96823 -17.35117 -16.85001 -16.02870 -15.70629 -15.12264 -15.01281 -14.77339 -14.57866 -14.49711 -14.32816 -14.24602 -14.18956 -14.01607 -13.84955 -13.75029 -13.44979 -13.38478 -12.78737 -12.42324 -12.38397 -11.96757 -11.90910 -11.61043 -11.27150 -11.12267 -10.92309 -10.79689 -10.46555 -10.26669 -10.08662 -9.99137 -9.95615 -9.64225 -8.92585 -8.85002 -6.98776 -5.76515 -3.05958 0.13725 1.09319 1.20617 2.00970 2.95377 3.02547 3.07558 3.41515 3.45463 3.49987 3.50782 3.75018 3.82792 3.99665 4.35657 4.39357 4.60686 4.65052 4.73480 5.11874 5.36139 5.43356 5.48765 5.64766 5.68058 5.83725 6.08460 6.16829 6.31812 6.41391 6.46920 6.64676 6.74575 6.87971 7.10518 7.18022 7.59141 7.70455 8.16586 8.42083 9.53320 10.08366 10.43427 11.46028 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002684 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.528209 B =10428.919041 C =10969.367003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.053 0.947 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.135 3.865 14 H 0.093 0.907 15 C -0.160 4.160 16 N -0.695 5.695 17 C 0.587 3.413 18 O -0.515 6.515 19 C -0.023 4.023 20 N -0.198 5.198 21 N -0.026 5.026 22 N -0.327 5.327 23 C 0.076 3.924 24 C 0.002 3.998 25 C 0.546 3.454 26 F -0.176 7.176 27 F -0.120 7.120 28 F -0.161 7.161 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.406 0.594 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 5.174 -27.500 28.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.071 0.929 4 N -0.362 5.362 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.031 3.969 14 H 0.111 0.889 15 C -0.218 4.218 16 N -0.347 5.347 17 C 0.368 3.632 18 O -0.390 6.390 19 C -0.165 4.165 20 N -0.070 5.070 21 N -0.006 5.006 22 N -0.114 5.114 23 C -0.064 4.064 24 C -0.137 4.137 25 C 0.488 3.512 26 F -0.157 7.157 27 F -0.101 7.101 28 F -0.142 7.142 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.223 0.777 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.244 0.756 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.973 5.602 -27.383 28.231 hybrid contribution 0.685 -0.068 0.550 0.881 sum -3.288 5.534 -26.833 27.594 Atomic orbital electron populations 1.22547 0.99165 1.01360 0.99958 1.20361 0.92318 0.95630 0.85961 0.92882 1.42440 1.78239 1.10704 1.04837 1.19184 1.36777 0.93951 0.87271 0.91147 1.24738 1.01931 0.96001 0.98102 1.69649 1.50534 1.08679 1.29140 0.86258 0.77764 0.78611 0.83469 1.21286 1.21718 1.21262 1.21479 0.99244 0.93047 0.83117 0.88871 1.22153 1.01718 0.95470 1.02480 1.46057 1.25702 1.55376 1.07533 1.16728 0.84350 0.80351 0.81764 1.90935 1.20973 1.42475 1.84625 1.21613 0.94565 1.05977 0.94341 1.74774 1.12540 1.07624 1.12025 1.82104 1.05346 1.18229 0.94966 1.50317 1.14892 1.35257 1.10936 1.22536 1.06236 1.04939 0.72707 1.21660 0.95652 1.03206 0.93224 1.16901 0.82214 0.76363 0.75692 1.93217 1.86734 1.78496 1.57273 1.93491 1.68240 1.95909 1.52456 1.93288 1.94327 1.35699 1.90864 0.92750 0.92299 0.94633 0.77743 0.93393 0.92379 0.92941 0.90228 0.75626 0.87956 0.88014 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.01 37.16 0.33 -2.57 16 2 C 0.17 3.24 2.93 -67.93 -0.20 3.04 16 3 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 4 N -0.72 -17.50 5.03 -53.43 -0.27 -17.77 16 5 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 9 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.14 2.33 2.62 -67.93 -0.18 2.15 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 15 C -0.16 -2.68 9.00 37.16 0.33 -2.35 16 16 N -0.69 -10.27 4.99 -54.85 -0.27 -10.54 16 17 C 0.59 8.90 7.73 -12.48 -0.10 8.80 16 18 O -0.52 -8.96 12.72 5.28 0.07 -8.90 16 19 C -0.02 -0.30 6.96 -83.55 -0.58 -0.88 16 20 N -0.20 -2.50 12.04 32.85 0.40 -2.11 16 21 N -0.03 -0.29 13.78 60.35 0.83 0.54 16 22 N -0.33 -2.85 4.03 -63.59 -0.26 -3.11 16 23 C 0.08 0.26 10.50 59.85 0.63 0.89 16 24 C 0.00 0.02 6.46 -81.88 -0.53 -0.51 16 25 C 0.55 5.82 3.14 36.00 0.11 5.93 16 26 F -0.18 -1.45 15.33 2.25 0.03 -1.41 16 27 F -0.12 -1.64 13.43 2.25 0.03 -1.61 16 28 F -0.16 -1.74 17.30 2.25 0.04 -1.70 16 29 H 0.05 0.93 6.57 -51.92 -0.34 0.59 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.49 6.29 -51.93 -0.33 0.17 16 32 H 0.39 9.91 5.77 -40.82 -0.24 9.68 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.48 6.29 -51.93 -0.33 1.15 16 37 H 0.41 5.42 6.26 -40.82 -0.26 5.16 16 38 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 39 H 0.10 0.23 7.11 -51.93 -0.37 -0.13 16 40 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -32.19 345.58 -3.16 -35.34 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.25 Total: 8.55 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -0.42 Total: 7.37 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 1.15 Total: -60.09 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.07 Total: -8.90 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.10 Total: -4.73 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.19 -3.16 -35.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329148249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.937 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds