Wall clock time and date at job start Tue Mar 31 2020 18:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 H 1.08998 * 109.47187 * 174.99859 * 13 2 1 15 15 C 1.53001 * 109.47314 * 294.99899 * 13 2 1 16 16 N 1.46500 * 109.47037 * 55.00170 * 13 2 1 17 17 C 1.34776 * 120.00386 * 154.99951 * 16 13 2 18 18 O 1.21600 * 119.99748 * 359.97438 * 17 16 13 19 19 C 1.47523 * 120.00300 * 179.97438 * 17 16 13 20 20 N 1.34396 * 125.76935 * 0.03190 * 19 17 16 21 21 N 1.28761 * 109.52153 * 179.97438 * 20 19 17 22 22 N 1.40209 * 108.36941 * 359.97438 * 21 20 19 23 23 C 1.46498 * 126.59572 * 179.97438 * 22 21 20 24 24 C 1.34816 * 106.81033 * 359.78267 * 22 21 20 25 25 C 1.50697 * 126.57980 * 180.21796 * 24 22 21 26 26 F 1.39891 * 109.47671 * 30.15952 * 25 24 22 27 27 F 1.39904 * 109.46924 * 150.16493 * 25 24 22 28 28 F 1.39908 * 109.46807 * 270.15665 * 25 24 22 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 33 33 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47005 * 60.00407 * 15 13 2 35 35 H 1.09004 * 109.47050 * 179.97438 * 15 13 2 36 36 H 1.08998 * 109.47150 * 300.00000 * 15 13 2 37 37 H 0.96999 * 120.00147 * 334.99483 * 16 13 2 38 38 H 1.09000 * 109.47041 * 89.98253 * 23 22 21 39 39 H 1.09005 * 109.47301 * 209.97964 * 23 22 21 40 40 H 1.09001 * 109.47601 * 329.98381 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 1.4868 0.8110 5.5294 11 1 3.3224 -0.6423 6.1623 12 1 3.7614 1.3974 4.9269 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.6444 -1.2951 15 6 1.6352 -2.1955 -1.1879 16 7 1.4558 -0.1037 -2.4423 17 6 2.0912 -0.1938 -3.6275 18 8 3.1495 -0.7873 -3.7064 19 6 1.5027 0.4277 -4.8291 20 7 0.3448 1.1085 -4.8744 21 7 0.1309 1.5141 -6.0776 22 7 1.1958 1.0872 -6.8836 23 6 1.3563 1.3301 -8.3194 24 6 2.0456 0.4138 -6.0825 25 6 3.3436 -0.2332 -6.4919 26 9 3.9015 0.4762 -7.5608 27 9 4.2314 -0.2223 -5.4108 28 9 3.1027 -1.5544 -6.8842 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1526 33 1 3.2629 -2.3923 4.2382 34 1 0.5489 -2.2724 -1.1421 35 1 1.9982 -2.7093 -2.0781 36 1 2.0699 -2.6550 -0.3002 37 1 0.6117 0.3701 -2.3794 38 1 1.8998 2.2626 -8.4716 39 1 1.9139 0.5073 -8.7670 40 1 0.3747 1.4012 -8.7880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329148249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:36 Heat of formation + Delta-G solvation = -84.908717 kcal Electronic energy + Delta-G solvation = -29820.371886 eV Core-core repulsion = 25064.839150 eV Total energy + Delta-G solvation = -4755.532736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.42303 -48.98134 -48.81264 -43.74669 -40.88170 -38.44418 -36.19983 -35.58749 -33.65947 -33.12622 -31.09060 -29.79922 -29.11414 -27.68745 -26.15745 -25.59916 -24.34169 -23.09062 -21.92164 -20.74728 -19.90117 -19.84399 -19.55244 -19.36317 -18.88504 -17.64544 -17.04947 -16.88231 -16.58480 -16.13876 -15.94660 -15.73275 -15.65615 -15.44892 -15.27328 -15.19487 -15.02301 -14.94282 -14.62964 -14.58127 -14.37790 -14.05493 -13.90222 -13.48034 -13.16587 -13.06860 -12.98042 -12.75688 -12.72467 -12.62366 -12.15984 -12.00554 -11.82351 -11.65087 -11.58892 -11.28842 -10.92023 -10.85963 -10.16292 -9.00773 -7.90926 -5.19593 -0.70258 0.24173 0.35670 1.23851 1.50087 1.52784 1.58564 1.83701 1.92368 2.20253 2.57696 2.59778 2.91971 2.98952 3.11620 3.42652 3.52503 3.86310 3.98502 4.03181 4.09952 4.16944 4.34613 4.38287 4.51325 4.62146 4.71882 4.79805 4.88396 4.98173 5.02671 5.22792 5.26678 5.44237 5.55844 5.64282 6.21487 6.31133 6.48472 6.98642 7.38039 8.11660 8.35692 9.32369 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002684 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.528209 B =10428.919041 C =10969.367003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 H 0.048 0.952 4 N -0.732 5.732 5 C -0.239 4.239 6 H 0.077 0.923 7 C -0.074 4.074 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.280 1.280 13 C 0.150 3.850 14 H 0.070 0.930 15 C -0.151 4.151 16 N -0.687 5.687 17 C 0.588 3.412 18 O -0.541 6.541 19 C -0.043 4.043 20 N -0.211 5.211 21 N -0.030 5.030 22 N -0.306 5.306 23 C 0.058 3.942 24 C 0.005 3.995 25 C 0.551 3.449 26 F -0.158 7.158 27 F -0.140 7.140 28 F -0.161 7.161 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.378 0.622 33 H 0.251 0.749 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.415 0.585 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 6.613 -29.689 30.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.066 0.934 4 N -0.374 5.374 5 C -0.371 4.371 6 H 0.095 0.905 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.206 1.206 13 C 0.045 3.955 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.340 5.340 17 C 0.371 3.629 18 O -0.418 6.418 19 C -0.185 4.185 20 N -0.082 5.082 21 N -0.011 5.011 22 N -0.092 5.092 23 C -0.080 4.080 24 C -0.136 4.136 25 C 0.493 3.507 26 F -0.139 7.139 27 F -0.121 7.121 28 F -0.143 7.143 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.212 0.788 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.254 0.746 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.066 7.101 -29.641 30.898 hybrid contribution 1.002 -0.444 0.984 1.472 sum -4.064 6.657 -28.657 29.700 Atomic orbital electron populations 1.22374 0.96815 1.01707 1.01042 1.20508 0.93760 0.94974 0.85082 0.93375 1.42616 1.78595 1.10480 1.05741 1.19573 1.34971 0.94290 0.88243 0.90533 1.25517 1.02867 0.96889 1.01378 1.69807 1.52379 1.10192 1.29546 0.85244 0.77922 0.77272 0.79498 1.20361 1.22404 1.20624 1.21049 0.97922 0.93250 0.83320 0.91188 1.22046 1.02350 0.94936 1.01573 1.45827 1.25931 1.55426 1.06829 1.16949 0.83897 0.79825 0.82236 1.90926 1.22101 1.43612 1.85135 1.21248 0.95516 1.07564 0.94173 1.74744 1.12474 1.07995 1.12970 1.82035 1.05983 1.18311 0.94763 1.50680 1.13257 1.33054 1.12254 1.23154 1.08489 1.06642 0.69720 1.21600 0.95816 1.03175 0.93009 1.16791 0.81829 0.76444 0.75593 1.93251 1.86463 1.78025 1.56187 1.93450 1.68924 1.96016 1.53744 1.93286 1.94300 1.35874 1.90795 0.92770 0.93685 0.91044 0.78803 0.94065 0.91047 0.92491 0.92402 0.74594 0.85725 0.86459 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 9.01 71.98 0.65 -4.60 16 2 C 0.17 6.37 2.93 44.99 0.13 6.51 16 3 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 4 N -0.73 -36.16 5.03 -322.94 -1.62 -37.79 16 5 C -0.24 -13.10 9.93 84.03 0.83 -12.26 16 6 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 7 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 8 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 9 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.15 5.18 2.62 44.99 0.12 5.29 16 14 H 0.07 2.77 7.58 -2.39 -0.02 2.75 16 15 C -0.15 -5.08 9.00 71.98 0.65 -4.44 16 16 N -0.69 -19.84 4.99 -445.71 -2.22 -22.06 16 17 C 0.59 17.59 7.73 86.69 0.67 18.26 16 18 O -0.54 -18.96 12.72 -4.03 -0.05 -19.01 16 19 C -0.04 -1.07 6.96 40.82 0.28 -0.78 16 20 N -0.21 -4.99 12.04 -50.00 -0.60 -5.60 16 21 N -0.03 -0.60 13.78 37.02 0.51 -0.09 16 22 N -0.31 -4.52 4.03 -355.09 -1.43 -5.95 16 23 C 0.06 0.19 10.50 127.77 1.34 1.53 16 24 C 0.01 0.10 6.46 41.72 0.27 0.37 16 25 C 0.55 10.95 3.14 71.23 0.22 11.18 16 26 F -0.16 -2.22 15.33 44.97 0.69 -1.54 16 27 F -0.14 -3.79 13.43 44.97 0.60 -3.19 16 28 F -0.16 -3.28 17.30 44.97 0.78 -2.50 16 29 H 0.05 1.79 6.57 -2.38 -0.02 1.77 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.82 6.29 -2.39 -0.02 1.81 16 32 H 0.38 19.93 5.77 -92.71 -0.54 19.39 16 33 H 0.25 14.93 8.31 -92.71 -0.77 14.15 16 34 H 0.07 2.19 6.57 -2.39 -0.02 2.17 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 2.22 6.29 -2.39 -0.02 2.20 16 37 H 0.42 10.44 6.26 -92.71 -0.58 9.86 16 38 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.12 0.10 7.11 -2.38 -0.02 0.08 16 40 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -70.21 345.58 4.61 -65.59 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.02 Total: 25.52 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 5.64 Total: 17.29 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -5.09 Total: -130.34 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 2.07 Total: -7.22 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -70.21 4.61 -65.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329148249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.318 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds