Wall clock time and date at job start Tue Mar 31 2020 18:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46896 * 2 1 4 4 C 1.53006 * 109.46934 * 119.99304 * 2 1 3 5 5 N 1.46496 * 109.46958 * 175.00088 * 4 2 1 6 6 C 1.46503 * 120.00262 * 270.00132 * 5 4 2 7 7 C 1.34778 * 119.99759 * 90.00548 * 5 4 2 8 8 O 1.21590 * 120.00208 * 4.07098 * 7 5 4 9 9 C 1.47535 * 119.99846 * 184.07259 * 7 5 4 10 10 N 1.34392 * 125.76897 * 353.75011 * 9 7 5 11 11 N 1.28758 * 109.52128 * 179.74785 * 10 9 7 12 12 N 1.40207 * 108.36716 * 0.39238 * 11 10 9 13 13 C 1.46503 * 126.59745 * 179.87814 * 12 11 10 14 14 C 1.34810 * 106.81049 * 359.61017 * 12 11 10 15 15 C 1.50697 * 126.58171 * 180.19269 * 14 12 11 16 16 F 1.39898 * 109.47322 * 30.02762 * 15 14 12 17 17 F 1.39902 * 109.47391 * 150.02465 * 15 14 12 18 18 F 1.39895 * 109.47365 * 270.02574 * 15 14 12 19 19 N 1.46493 * 109.47549 * 239.99649 * 2 1 3 20 20 C 1.36936 * 120.00163 * 84.99578 * 19 2 1 21 21 H 1.08004 * 120.00007 * 0.02562 * 20 19 2 22 22 C 1.38809 * 120.00288 * 179.97438 * 20 19 2 23 23 N 1.31621 * 119.99963 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00041 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47293 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47256 * 120.00654 * 24 22 20 27 27 H 1.48508 * 109.47071 * 239.99959 * 24 22 20 28 28 H 1.09004 * 109.46923 * 60.00349 * 1 2 3 29 29 H 1.09003 * 109.46896 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47637 * 300.00564 * 1 2 3 31 31 H 1.08998 * 109.46965 * 55.00513 * 4 2 1 32 32 H 1.08993 * 109.47274 * 295.00145 * 4 2 1 33 33 H 1.08995 * 109.47495 * 264.17899 * 6 5 4 34 34 H 1.09005 * 109.46959 * 24.18296 * 6 5 4 35 35 H 1.09001 * 109.47167 * 144.17704 * 6 5 4 36 36 H 1.09002 * 109.46748 * 269.68374 * 13 12 11 37 37 H 1.09003 * 109.46862 * 29.68091 * 13 12 11 38 38 H 1.08996 * 109.47297 * 149.68158 * 13 12 11 39 39 H 0.96998 * 120.00125 * 265.00449 * 19 2 1 40 40 H 0.96996 * 120.00163 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5615 7 6 4.2674 0.1494 1.7158 8 8 3.7503 1.0799 2.3032 9 6 5.7350 0.0882 1.5777 10 7 6.4333 -0.9367 1.0600 11 7 7.6901 -0.6579 1.0863 12 7 7.8489 0.6129 1.6570 13 6 9.1134 1.3179 1.8811 14 6 6.6137 1.0638 1.9545 15 6 6.2687 2.3893 2.5828 16 9 7.2260 3.3419 2.2175 17 9 5.0077 2.8017 2.1391 18 9 6.2523 2.2552 3.9752 19 7 2.0184 -0.6906 -1.1960 20 6 2.1492 -0.0076 -2.3757 21 1 1.8926 1.0404 -2.4242 22 6 2.6125 -0.6619 -3.5089 23 7 2.9256 -1.9389 -3.4497 24 14 2.7915 0.2701 -5.1178 25 1 2.3762 1.6821 -4.9209 26 1 4.2086 0.2272 -5.5597 27 1 1.9313 -0.3586 -6.1524 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6054 -1.7197 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 4.3765 -2.7269 1.3263 34 1 3.4329 -2.4342 -0.1543 35 1 5.0337 -1.6818 0.0441 36 1 9.4974 1.0695 2.8705 37 1 9.8370 1.0155 1.1241 38 1 8.9466 2.3930 1.8154 39 1 2.2491 -1.6318 -1.1524 40 1 3.2490 -2.3962 -4.2416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331583516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:06 Heat of formation + Delta-G solvation = -43.024140 kcal Electronic energy + Delta-G solvation = -30913.627701 eV Core-core repulsion = 26159.911216 eV Total energy + Delta-G solvation = -4753.716485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.42340 -48.04392 -47.70642 -42.61795 -39.37762 -36.34953 -35.24806 -34.08714 -32.22479 -31.81642 -29.00272 -28.40900 -26.77075 -26.64992 -25.62666 -23.77072 -22.99152 -22.13077 -20.46911 -19.52175 -18.82488 -18.57808 -18.28524 -17.32967 -17.18581 -16.63410 -15.99278 -15.65648 -15.16990 -14.93001 -14.62683 -14.51970 -14.30604 -14.12062 -14.05112 -13.84375 -13.75007 -13.70435 -13.46310 -13.20499 -13.03454 -12.48778 -12.22412 -12.17124 -12.08227 -11.96623 -11.44629 -11.26629 -10.93946 -10.85385 -10.71561 -10.64192 -10.29545 -9.99310 -9.81828 -9.66673 -9.57088 -8.90296 -8.14795 -6.91024 -5.74096 -3.00824 0.42010 1.37149 1.52863 2.23767 3.10130 3.19247 3.38532 3.44362 3.50991 3.52399 3.65795 4.02077 4.05926 4.18694 4.56844 4.60480 4.62277 4.89127 4.96685 5.24501 5.53364 5.59356 5.64740 5.71446 5.84071 5.95634 6.06672 6.16303 6.30678 6.39261 6.59614 6.76277 6.84749 6.89068 7.16829 7.52176 7.68819 7.76059 8.33827 8.45652 9.56632 10.12862 10.48404 11.48917 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.004348 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.730676 B = 6438.024639 C = 7084.356114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.109 3.891 5 N -0.570 5.570 6 C 0.075 3.925 7 C 0.588 3.412 8 O -0.530 6.530 9 C -0.014 4.014 10 N -0.189 5.189 11 N -0.032 5.032 12 N -0.328 5.328 13 C 0.067 3.933 14 C -0.003 4.003 15 C 0.549 3.451 16 F -0.176 7.176 17 F -0.123 7.123 18 F -0.162 7.162 19 N -0.720 5.720 20 C -0.230 4.230 21 H 0.068 0.932 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.902 3.098 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.292 1.292 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.382 0.618 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.953 5.355 15.274 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.070 0.930 4 C -0.013 4.013 5 N -0.299 5.299 6 C -0.068 4.068 7 C 0.372 3.628 8 O -0.407 6.407 9 C -0.155 4.155 10 N -0.060 5.060 11 N -0.012 5.012 12 N -0.115 5.115 13 C -0.073 4.073 14 C -0.143 4.143 15 C 0.492 3.508 16 F -0.158 7.158 17 F -0.103 7.103 18 F -0.143 7.143 19 N -0.364 5.364 20 C -0.361 4.361 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.582 5.582 24 Si 0.733 3.267 25 H -0.207 1.207 26 H -0.221 1.221 27 H -0.219 1.219 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.217 0.783 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.441 4.779 14.851 19.347 hybrid contribution -0.003 1.095 -0.708 1.304 sum 11.438 5.875 14.143 19.114 Atomic orbital electron populations 1.22362 0.98626 1.00890 1.00325 1.20674 0.92116 0.96288 0.86639 0.92975 1.21978 0.77850 1.01715 0.99805 1.47405 1.06782 1.20617 1.55097 1.22281 1.00615 0.86497 0.97394 1.16697 0.82922 0.83019 0.80166 1.90855 1.73011 1.33187 1.43601 1.21502 0.96651 0.91298 1.06031 1.75008 0.97922 1.21585 1.11504 1.82123 1.11721 0.92455 1.14872 1.50279 1.06020 1.14776 1.40383 1.22660 0.81434 0.98174 1.05081 1.21540 0.87854 0.97684 1.07174 1.16861 0.76288 0.81202 0.76425 1.93140 1.64267 1.66814 1.91547 1.93466 1.37990 1.90228 1.88646 1.93265 1.96272 1.95732 1.29031 1.42478 1.78145 1.10495 1.05237 1.19260 1.35815 0.93816 0.87253 0.91369 1.24660 1.02441 0.95978 0.97821 1.69635 1.51393 1.08524 1.28671 0.86189 0.77210 0.78886 0.84384 1.20689 1.22076 1.21941 0.92535 0.93424 0.94232 0.90436 0.89668 0.93354 0.89481 0.88656 0.88404 0.86977 0.87238 0.78265 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.15 3.11 3.20 -67.93 -0.22 2.89 16 3 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 4 C 0.11 1.88 5.06 -4.04 -0.02 1.85 16 5 N -0.57 -10.25 2.73 -182.81 -0.50 -10.75 16 6 C 0.08 1.32 9.15 59.85 0.55 1.86 16 7 C 0.59 10.81 7.55 -12.47 -0.09 10.71 16 8 O -0.53 -10.27 12.80 5.29 0.07 -10.21 16 9 C -0.01 -0.23 6.68 -83.55 -0.56 -0.78 16 10 N -0.19 -3.13 8.79 32.85 0.29 -2.84 16 11 N -0.03 -0.47 13.78 60.35 0.83 0.36 16 12 N -0.33 -3.90 4.03 -63.59 -0.26 -4.15 16 13 C 0.07 0.42 11.24 59.85 0.67 1.09 16 14 C 0.00 -0.05 6.46 -81.88 -0.53 -0.58 16 15 C 0.55 7.19 3.19 36.00 0.11 7.30 16 16 F -0.18 -1.86 14.67 2.25 0.03 -1.83 16 17 F -0.12 -1.97 13.60 2.25 0.03 -1.94 16 18 F -0.16 -2.03 17.30 2.25 0.04 -1.99 16 19 N -0.72 -17.52 4.57 -53.43 -0.24 -17.76 16 20 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 24 Si 0.90 22.60 29.55 -169.99 -5.02 17.58 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 32 H 0.09 1.38 7.37 -51.93 -0.38 0.99 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.67 5.78 -51.93 -0.30 1.37 16 35 H 0.10 1.82 5.24 -51.93 -0.27 1.55 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.59 5.69 -51.93 -0.30 0.29 16 39 H 0.38 9.57 5.41 -40.82 -0.22 9.35 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -32.44 344.27 -3.19 -35.63 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.39 Total: 4.61 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 0.02 Total: 14.84 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.85 Total: -61.87 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.10 Total: -5.76 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.44 -3.19 -35.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331583516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.398 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds