Wall clock time and date at job start Tue Mar 31 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46896 * 2 1 4 4 C 1.53006 * 109.46934 * 119.99304 * 2 1 3 5 5 N 1.46496 * 109.46958 * 175.00088 * 4 2 1 6 6 C 1.46503 * 120.00262 * 270.00132 * 5 4 2 7 7 C 1.34778 * 119.99759 * 90.00548 * 5 4 2 8 8 O 1.21590 * 120.00208 * 4.07098 * 7 5 4 9 9 C 1.47535 * 119.99846 * 184.07259 * 7 5 4 10 10 N 1.34392 * 125.76897 * 353.75011 * 9 7 5 11 11 N 1.28758 * 109.52128 * 179.74785 * 10 9 7 12 12 N 1.40207 * 108.36716 * 0.39238 * 11 10 9 13 13 C 1.46503 * 126.59745 * 179.87814 * 12 11 10 14 14 C 1.34810 * 106.81049 * 359.61017 * 12 11 10 15 15 C 1.50697 * 126.58171 * 180.19269 * 14 12 11 16 16 F 1.39898 * 109.47322 * 30.02762 * 15 14 12 17 17 F 1.39902 * 109.47391 * 150.02465 * 15 14 12 18 18 F 1.39895 * 109.47365 * 270.02574 * 15 14 12 19 19 N 1.46493 * 109.47549 * 239.99649 * 2 1 3 20 20 C 1.36936 * 120.00163 * 84.99578 * 19 2 1 21 21 H 1.08004 * 120.00007 * 0.02562 * 20 19 2 22 22 C 1.38809 * 120.00288 * 179.97438 * 20 19 2 23 23 N 1.31621 * 119.99963 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00041 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47293 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47256 * 120.00654 * 24 22 20 27 27 H 1.48508 * 109.47071 * 239.99959 * 24 22 20 28 28 H 1.09004 * 109.46923 * 60.00349 * 1 2 3 29 29 H 1.09003 * 109.46896 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47637 * 300.00564 * 1 2 3 31 31 H 1.08998 * 109.46965 * 55.00513 * 4 2 1 32 32 H 1.08993 * 109.47274 * 295.00145 * 4 2 1 33 33 H 1.08995 * 109.47495 * 264.17899 * 6 5 4 34 34 H 1.09005 * 109.46959 * 24.18296 * 6 5 4 35 35 H 1.09001 * 109.47167 * 144.17704 * 6 5 4 36 36 H 1.09002 * 109.46748 * 269.68374 * 13 12 11 37 37 H 1.09003 * 109.46862 * 29.68091 * 13 12 11 38 38 H 1.08996 * 109.47297 * 149.68158 * 13 12 11 39 39 H 0.96998 * 120.00125 * 265.00449 * 19 2 1 40 40 H 0.96996 * 120.00163 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5615 7 6 4.2674 0.1494 1.7158 8 8 3.7503 1.0799 2.3032 9 6 5.7350 0.0882 1.5777 10 7 6.4333 -0.9367 1.0600 11 7 7.6901 -0.6579 1.0863 12 7 7.8489 0.6129 1.6570 13 6 9.1134 1.3179 1.8811 14 6 6.6137 1.0638 1.9545 15 6 6.2687 2.3893 2.5828 16 9 7.2260 3.3419 2.2175 17 9 5.0077 2.8017 2.1391 18 9 6.2523 2.2552 3.9752 19 7 2.0184 -0.6906 -1.1960 20 6 2.1492 -0.0076 -2.3757 21 1 1.8926 1.0404 -2.4242 22 6 2.6125 -0.6619 -3.5089 23 7 2.9256 -1.9389 -3.4497 24 14 2.7915 0.2701 -5.1178 25 1 2.3762 1.6821 -4.9209 26 1 4.2086 0.2272 -5.5597 27 1 1.9313 -0.3586 -6.1524 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6054 -1.7197 1.2953 32 1 1.7516 -0.1582 2.1370 33 1 4.3765 -2.7269 1.3263 34 1 3.4329 -2.4342 -0.1543 35 1 5.0337 -1.6818 0.0441 36 1 9.4974 1.0695 2.8705 37 1 9.8370 1.0155 1.1241 38 1 8.9466 2.3930 1.8154 39 1 2.2491 -1.6318 -1.1524 40 1 3.2490 -2.3962 -4.2416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331583516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:05 Heat of formation + Delta-G solvation = -65.072862 kcal Electronic energy + Delta-G solvation = -30914.583805 eV Core-core repulsion = 26159.911216 eV Total energy + Delta-G solvation = -4754.672589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.45400 -49.02241 -48.82454 -43.72838 -40.77148 -37.94179 -36.34871 -35.61802 -33.95899 -33.10168 -30.74866 -29.48460 -28.05418 -27.79399 -26.96532 -25.69803 -24.27946 -23.19212 -21.93992 -20.91021 -19.85119 -19.60204 -19.40006 -19.25619 -18.53880 -17.68887 -17.33249 -16.91897 -16.56102 -16.32509 -15.89449 -15.67557 -15.61875 -15.35993 -15.28245 -15.12751 -14.98567 -14.94413 -14.68554 -14.35026 -14.05845 -13.87901 -13.72168 -13.62760 -13.57222 -13.07127 -13.01320 -12.83760 -12.75403 -12.47651 -12.17136 -12.15250 -11.84772 -11.69040 -11.57783 -11.18739 -10.94351 -10.79286 -9.59773 -8.92237 -7.90327 -5.15414 -0.66781 0.30136 0.39799 1.25334 1.44470 1.45775 1.54403 1.78162 2.04346 2.18051 2.57107 2.59894 2.93813 2.99755 3.08884 3.43635 3.53823 3.84179 3.96631 4.13398 4.15944 4.32028 4.39442 4.49764 4.51791 4.66905 4.72685 4.78496 4.83684 4.92346 5.08681 5.28658 5.29808 5.40735 5.55001 5.66772 6.22991 6.33991 6.43571 6.95583 7.40120 8.14592 8.41355 9.32598 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.004348 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.730676 B = 6438.024639 C = 7084.356114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 H 0.026 0.974 4 C 0.115 3.885 5 N -0.576 5.576 6 C 0.086 3.914 7 C 0.582 3.418 8 O -0.546 6.546 9 C -0.042 4.042 10 N -0.209 5.209 11 N -0.042 5.042 12 N -0.306 5.306 13 C 0.050 3.950 14 C -0.001 4.001 15 C 0.557 3.443 16 F -0.158 7.158 17 F -0.143 7.143 18 F -0.156 7.156 19 N -0.726 5.726 20 C -0.230 4.230 21 H 0.062 0.938 22 C -0.067 4.067 23 N -0.960 5.960 24 Si 0.958 3.042 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.292 1.292 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.378 0.622 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.925 6.134 16.344 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.045 0.955 4 C -0.008 4.008 5 N -0.305 5.305 6 C -0.057 4.057 7 C 0.367 3.633 8 O -0.424 6.424 9 C -0.184 4.184 10 N -0.079 5.079 11 N -0.022 5.022 12 N -0.093 5.093 13 C -0.087 4.087 14 C -0.141 4.141 15 C 0.500 3.500 16 F -0.139 7.139 17 F -0.124 7.124 18 F -0.138 7.138 19 N -0.369 5.369 20 C -0.362 4.362 21 H 0.080 0.920 22 C -0.260 4.260 23 N -0.611 5.611 24 Si 0.788 3.212 25 H -0.199 1.199 26 H -0.225 1.225 27 H -0.219 1.219 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.212 0.788 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.428 5.579 15.946 20.973 hybrid contribution -0.194 0.954 -0.951 1.360 sum 12.234 6.533 14.996 20.426 Atomic orbital electron populations 1.22195 0.96447 1.01567 1.00891 1.20829 0.93565 0.94900 0.86592 0.95540 1.21956 0.77677 1.02673 0.98454 1.47504 1.07115 1.20776 1.55065 1.22148 0.99245 0.86718 0.97588 1.16963 0.83813 0.82677 0.79811 1.90829 1.73629 1.33583 1.44350 1.21396 0.96250 0.92641 1.08143 1.74964 0.98578 1.22215 1.12163 1.82031 1.10955 0.93742 1.15434 1.50671 1.06896 1.13828 1.37918 1.23267 0.79471 0.98416 1.07585 1.21601 0.88298 0.97576 1.06675 1.16668 0.75824 0.81043 0.76479 1.93176 1.63331 1.66025 1.91410 1.93424 1.39589 1.90396 1.88943 1.93275 1.96222 1.95719 1.28552 1.42572 1.78387 1.10322 1.05623 1.19475 1.34538 0.93679 0.88518 0.91995 1.25296 1.03281 0.96844 1.00540 1.69758 1.52695 1.09592 1.29018 0.85299 0.76654 0.78149 0.81056 1.19919 1.22451 1.21927 0.94520 0.92652 0.91077 0.88355 0.88264 0.90868 0.91392 0.90245 0.85350 0.84859 0.86022 0.78758 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.49 71.98 0.68 -4.56 16 2 C 0.15 6.07 3.20 44.99 0.14 6.21 16 3 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 4 C 0.11 3.84 5.06 86.38 0.44 4.28 16 5 N -0.58 -20.64 2.73 -850.55 -2.32 -22.96 16 6 C 0.09 3.04 9.15 127.77 1.17 4.21 16 7 C 0.58 21.43 7.55 86.69 0.65 22.09 16 8 O -0.55 -21.13 12.80 -4.00 -0.05 -21.18 16 9 C -0.04 -1.41 6.68 40.82 0.27 -1.14 16 10 N -0.21 -6.90 8.79 -49.99 -0.44 -7.34 16 11 N -0.04 -1.18 13.78 37.02 0.51 -0.67 16 12 N -0.31 -6.71 4.03 -355.10 -1.43 -8.14 16 13 C 0.05 0.47 11.24 127.77 1.44 1.90 16 14 C 0.00 -0.01 6.46 41.72 0.27 0.26 16 15 C 0.56 13.82 3.19 71.23 0.23 14.04 16 16 F -0.16 -2.99 14.67 44.97 0.66 -2.33 16 17 F -0.14 -4.54 13.60 44.97 0.61 -3.93 16 18 F -0.16 -3.67 17.30 44.97 0.78 -2.89 16 19 N -0.73 -35.69 4.57 -322.94 -1.47 -37.16 16 20 C -0.23 -12.82 9.93 84.03 0.83 -11.98 16 21 H 0.06 3.47 7.83 -2.91 -0.02 3.44 16 22 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 23 N -0.96 -57.23 13.06 21.65 0.28 -56.95 16 24 Si 0.96 46.86 29.55 68.60 2.03 48.89 16 25 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.10 2.87 8.07 -2.39 -0.02 2.85 16 32 H 0.10 3.06 7.37 -2.39 -0.02 3.04 16 33 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.07 2.65 5.78 -2.38 -0.01 2.63 16 35 H 0.08 3.10 5.24 -2.39 -0.01 3.09 16 36 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.12 0.90 5.69 -2.39 -0.01 0.89 16 39 H 0.38 19.20 5.41 -92.71 -0.50 18.70 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -70.50 344.27 6.36 -64.14 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.61 Total: 18.57 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: 6.59 Total: 31.95 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -4.87 Total: -133.22 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 9 Polarization: -11.19 SS G_CDS: 2.05 Total: -9.14 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -70.50 6.36 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331583516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.933 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds