Wall clock time and date at job start Tue Mar 31 2020 18:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46920 * 119.69085 * 2 1 4 4 C 1.53219 * 108.81960 * 108.04504 * 3 2 1 5 5 N 1.46069 * 109.72413 * 81.60368 * 4 3 2 6 6 C 1.34779 * 118.73344 * 116.16128 * 5 4 3 7 7 O 1.21361 * 120.00045 * 346.17156 * 6 5 4 8 8 C 1.49310 * 119.99901 * 165.90092 * 6 5 4 9 9 O 1.21403 * 119.99666 * 353.81786 * 8 6 5 10 10 N 1.34777 * 119.99925 * 173.82205 * 8 6 5 11 11 C 1.40291 * 120.00029 * 179.97438 * 10 8 6 12 12 C 1.40726 * 126.09947 * 0.02562 * 11 10 8 13 13 N 1.30866 * 108.37431 * 179.97438 * 12 11 10 14 14 N 1.40060 * 108.44092 * 359.97438 * 13 12 11 15 15 C 1.37297 * 126.05859 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99990 * 179.97438 * 15 14 13 17 17 C 1.39007 * 120.00019 * 359.97438 * 15 14 13 18 18 N 1.31283 * 119.99927 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47308 * 89.99488 * 19 17 15 21 21 H 1.48494 * 109.47164 * 209.99693 * 19 17 15 22 22 H 1.48501 * 109.46914 * 329.99960 * 19 17 15 23 23 C 1.35787 * 126.09943 * 179.71160 * 11 10 8 24 24 C 1.46158 * 122.53398 * 296.43180 * 5 4 3 25 25 C 1.52893 * 109.78569 * 63.40836 * 24 5 4 26 26 C 1.33636 * 119.68781 * 180.02562 * 2 1 3 27 27 O 1.21284 * 119.76933 * 0.28457 * 26 2 1 28 28 H 1.08994 * 109.47593 * 89.99812 * 1 2 3 29 29 H 1.09002 * 109.46943 * 209.99959 * 1 2 3 30 30 H 1.08993 * 109.47145 * 329.99411 * 1 2 3 31 31 H 1.09000 * 109.57414 * 348.24617 * 3 2 1 32 32 H 1.08995 * 109.69095 * 227.91470 * 3 2 1 33 33 H 1.09001 * 109.43152 * 321.51980 * 4 3 2 34 34 H 1.09005 * 109.38518 * 201.65223 * 4 3 2 35 35 H 0.97001 * 119.99447 * 359.97438 * 10 8 6 36 36 H 1.07997 * 125.81107 * 0.02562 * 12 11 10 37 37 H 0.96996 * 120.00032 * 180.02562 * 18 17 15 38 38 H 1.07998 * 126.25239 * 0.02562 * 23 11 10 39 39 H 1.08997 * 109.46648 * 183.42279 * 24 5 4 40 40 H 1.08995 * 109.46842 * 303.39545 * 24 5 4 41 41 H 1.08992 * 109.67516 * 160.26428 * 25 24 5 42 42 H 1.09007 * 109.49373 * 39.77661 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1927 1.2763 0.0000 4 6 2.8278 1.4832 1.3789 5 7 4.0790 0.7341 1.4628 6 6 5.2322 1.4142 1.6176 7 8 5.2584 2.6137 1.4352 8 6 6.4762 0.6928 2.0195 9 8 6.4269 -0.4835 2.3156 10 7 7.6537 1.3475 2.0535 11 6 8.8225 0.6699 2.4315 12 6 8.9131 -0.6858 2.7983 13 7 10.1619 -0.9534 3.0835 14 7 10.9159 0.2143 2.9108 15 6 12.2683 0.3401 3.1113 16 1 12.7522 1.2917 2.9476 17 6 13.0146 -0.7572 3.5249 18 7 12.4263 -1.9138 3.7243 19 14 14.8545 -0.5859 3.7983 20 1 15.1112 -0.1937 5.2074 21 1 15.5197 -1.8833 3.5167 22 1 15.3953 0.4556 2.8883 23 6 10.0690 1.2035 2.5032 24 6 4.1291 -0.7243 1.3796 25 6 3.6386 -1.1814 0.0055 26 6 2.1268 -1.1609 -0.0005 27 8 1.5105 -2.2055 -0.0062 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.5001 2.0916 -0.2092 32 1 2.9721 1.2547 -0.7616 33 1 2.1424 1.1319 2.1502 34 1 3.0295 2.5438 1.5290 35 1 7.6930 2.2874 1.8166 36 1 8.0919 -1.3862 2.8369 37 1 12.9470 -2.6794 4.0132 38 1 10.3403 2.2248 2.2802 39 1 5.1550 -1.0615 1.5270 40 1 3.4912 -1.1543 2.1517 41 1 3.9916 -2.1935 -0.1921 42 1 4.0167 -0.5034 -0.7598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333437108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:28 Heat of formation + Delta-G solvation = -3.375295 kcal Electronic energy + Delta-G solvation = -28704.166144 eV Core-core repulsion = 24494.025703 eV Total energy + Delta-G solvation = -4210.140441 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39054 -41.56828 -40.87208 -39.49777 -37.84389 -36.58039 -35.77351 -34.94827 -32.75552 -32.27661 -31.02668 -29.85730 -27.70855 -27.10028 -25.92593 -25.29075 -23.50612 -22.86759 -21.37651 -21.08996 -20.17309 -19.42037 -18.76356 -18.36718 -18.07639 -17.43296 -17.17645 -17.05052 -16.66799 -16.52806 -16.43465 -15.72513 -15.48690 -15.44848 -14.88323 -14.85693 -14.76362 -14.16718 -14.09997 -13.69506 -13.54097 -13.49138 -13.36488 -13.20040 -12.96567 -12.94802 -12.90179 -12.67459 -12.47346 -12.18243 -12.08094 -11.88303 -11.06103 -10.96126 -10.83274 -10.25524 -10.12827 -10.11559 -9.63530 -8.60372 -8.47450 -6.24798 0.20875 1.23292 1.30530 1.42725 1.48717 1.59303 1.72432 1.97768 2.00756 2.11263 2.38884 2.53659 2.83947 3.09374 3.34212 3.45277 3.88902 3.90693 4.06798 4.09905 4.19977 4.33060 4.41954 4.50290 4.54909 4.59723 4.62554 4.79998 4.88884 4.93344 4.94111 4.97579 5.00461 5.19206 5.28820 5.42617 5.48447 5.85008 5.93770 6.19698 6.26467 6.39246 6.67855 6.73561 7.05366 7.07369 7.43167 7.65757 8.51533 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.002287 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.811898 B =12239.439174 C =12955.169959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.610 5.610 3 C 0.099 3.901 4 C 0.086 3.914 5 N -0.578 5.578 6 C 0.527 3.473 7 O -0.527 6.527 8 C 0.484 3.516 9 O -0.527 6.527 10 N -0.576 5.576 11 C -0.057 4.057 12 C -0.044 4.044 13 N -0.309 5.309 14 N -0.165 5.165 15 C -0.352 4.352 16 H 0.141 0.859 17 C -0.005 4.005 18 N -0.821 5.821 19 Si 1.017 2.983 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.245 1.245 23 C -0.073 4.073 24 C 0.070 3.930 25 C -0.146 4.146 26 C 0.509 3.491 27 O -0.592 6.592 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.424 0.576 36 H 0.179 0.821 37 H 0.277 0.723 38 H 0.188 0.812 39 H 0.153 0.847 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.880 10.739 -7.215 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C -0.024 4.024 4 C -0.036 4.036 5 N -0.311 5.311 6 C 0.309 3.691 7 O -0.403 6.403 8 C 0.267 3.733 9 O -0.407 6.407 10 N -0.219 5.219 11 C -0.163 4.163 12 C -0.220 4.220 13 N -0.141 5.141 14 N 0.068 4.932 15 C -0.483 4.483 16 H 0.159 0.841 17 C -0.217 4.217 18 N -0.448 5.448 19 Si 0.836 3.164 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.168 1.168 23 C -0.224 4.224 24 C -0.052 4.052 25 C -0.187 4.187 26 C 0.298 3.702 27 O -0.473 6.473 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.156 0.844 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.262 0.738 36 H 0.196 0.804 37 H 0.087 0.913 38 H 0.205 0.795 39 H 0.169 0.831 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.423 8.935 -6.673 20.687 hybrid contribution -0.030 0.532 -0.101 0.543 sum -17.454 9.467 -6.774 20.980 Atomic orbital electron populations 1.21845 0.78028 1.03856 1.02643 1.47913 1.08077 1.06290 1.71941 1.22385 0.97869 0.85484 0.96664 1.22332 0.83691 0.99011 0.98608 1.47673 1.05894 1.07820 1.69763 1.19689 0.84592 0.86764 0.78040 1.90735 1.85285 1.14655 1.49635 1.20326 0.84899 0.87084 0.81001 1.90313 1.84343 1.16458 1.49539 1.42106 1.03979 1.14085 1.61776 1.17251 0.86148 0.93079 1.19872 1.24306 0.95752 0.95560 1.06379 1.78170 1.02296 1.06771 1.26824 1.44834 1.06712 1.05127 1.36575 1.20623 0.78954 1.00423 1.48335 0.84135 1.26846 1.06593 0.93820 0.94432 1.70368 1.38784 1.01280 1.34417 0.84610 0.73411 0.78802 0.79538 1.18985 1.20245 1.16772 1.22027 0.89117 0.96748 1.14495 1.22741 1.09089 0.78082 0.95285 1.22320 0.90736 1.05779 0.99891 1.20945 0.91192 0.83227 0.74874 1.90693 1.70900 1.33535 1.52168 0.91911 0.92572 0.87752 0.84377 0.89745 0.89400 0.86329 0.73780 0.80398 0.91303 0.79526 0.83132 0.91104 0.87154 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.33 127.77 1.32 2.22 16 2 N -0.61 -9.18 2.89 -846.30 -2.45 -11.63 16 3 C 0.10 0.94 5.89 86.37 0.51 1.45 16 4 C 0.09 1.12 6.14 86.53 0.53 1.65 16 5 N -0.58 -11.55 2.78 -825.29 -2.29 -13.84 16 6 C 0.53 13.12 7.61 87.23 0.66 13.78 16 7 O -0.53 -13.64 15.80 -3.28 -0.05 -13.69 16 8 C 0.48 15.22 7.67 87.23 0.67 15.89 16 9 O -0.53 -18.81 10.29 -3.41 -0.04 -18.85 16 10 N -0.58 -19.06 5.45 -305.33 -1.66 -20.72 16 11 C -0.06 -2.45 6.90 37.83 0.26 -2.19 16 12 C -0.04 -2.23 10.85 85.44 0.93 -1.30 16 13 N -0.31 -17.72 10.39 -56.44 -0.59 -18.31 16 14 N -0.16 -8.76 3.73 -189.97 -0.71 -9.47 16 15 C -0.35 -18.00 10.25 84.02 0.86 -17.14 16 16 H 0.14 6.21 7.83 -2.91 -0.02 6.19 16 17 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 18 N -0.82 -45.94 11.81 21.66 0.26 -45.69 16 19 Si 1.02 37.46 29.55 68.60 2.03 39.48 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.24 -8.17 7.11 99.48 0.71 -7.46 16 23 C -0.07 -3.21 11.50 83.41 0.96 -2.25 16 24 C 0.07 1.53 5.72 86.41 0.49 2.02 16 25 C -0.15 -2.91 5.59 29.97 0.17 -2.74 16 26 C 0.51 11.38 6.84 87.99 0.60 11.98 16 27 O -0.59 -18.36 16.58 -3.04 -0.05 -18.41 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.92 7.38 -2.39 -0.02 0.90 16 30 H 0.10 0.49 8.02 -2.39 -0.02 0.47 16 31 H 0.14 0.37 7.91 -2.39 -0.02 0.35 16 32 H 0.08 0.89 7.04 -2.39 -0.02 0.88 16 33 H 0.09 1.07 8.11 -2.39 -0.02 1.05 16 34 H 0.12 1.45 6.90 -2.38 -0.02 1.43 16 35 H 0.42 11.54 8.31 -92.71 -0.77 10.77 16 36 H 0.18 8.67 5.92 -2.91 -0.02 8.66 16 37 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.19 6.50 8.06 -2.91 -0.02 6.48 16 39 H 0.15 4.09 3.91 -74.31 -0.29 3.80 16 40 H 0.07 1.60 7.95 -2.39 -0.02 1.58 16 41 H 0.11 2.28 8.13 -2.39 -0.02 2.26 16 42 H 0.11 1.78 7.08 -2.38 -0.02 1.76 16 Total: -1.00 -75.39 350.35 2.92 -72.47 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.04 Total: 35.06 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 8.43 Total: 23.60 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -7.44 Total: -119.66 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -0.14 Total: -50.95 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.48 kcal Total: -75.39 2.92 -72.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333437108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.090 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds