Wall clock time and date at job start Tue Mar 31 2020 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35812 * 126.05284 * 2 1 4 4 C 1.35761 * 107.56489 * 180.13902 * 3 2 1 5 5 N 1.40758 * 126.08175 * 179.89857 * 4 3 2 6 6 C 1.46762 * 124.34932 * 179.91207 * 5 4 3 7 7 C 1.54479 * 105.53509 * 163.21441 * 6 5 4 8 8 H 1.08994 * 110.97201 * 143.32717 * 7 6 5 9 9 C 1.50699 * 111.00097 * 267.07730 * 7 6 5 10 10 O 1.21283 * 120.00281 * 353.85173 * 9 7 6 11 11 N 1.34778 * 119.99808 * 173.84950 * 9 7 6 12 12 C 1.46499 * 119.99945 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.47029 * 180.02562 * 12 11 9 14 14 O 1.21294 * 120.00003 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99904 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99989 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99705 * 359.97438 * 16 15 13 18 18 C 1.38941 * 120.00102 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99905 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00258 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47063 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47237 * 119.99757 * 20 18 16 23 23 H 1.48499 * 109.47025 * 239.99894 * 20 18 16 24 24 C 1.54632 * 101.76358 * 25.20859 * 7 6 5 25 25 C 1.34417 * 124.35012 * 359.74159 * 5 4 3 26 26 O 1.21313 * 124.94335 * 0.42964 * 25 5 4 27 27 C 1.40254 * 107.83372 * 359.64038 * 4 3 2 28 28 N 1.30822 * 108.33976 * 0.22338 * 27 4 3 29 29 H 1.09004 * 109.47131 * 270.23244 * 1 2 3 30 30 H 1.08997 * 109.47360 * 30.24181 * 1 2 3 31 31 H 1.09001 * 109.46859 * 150.23808 * 1 2 3 32 32 H 1.07997 * 126.22128 * 0.02562 * 3 2 1 33 33 H 1.09004 * 110.38933 * 44.10854 * 6 5 4 34 34 H 1.08990 * 110.03997 * 282.14643 * 6 5 4 35 35 H 0.97002 * 119.99902 * 359.97438 * 11 9 7 36 36 H 1.08998 * 109.46967 * 299.99711 * 12 11 9 37 37 H 1.08991 * 109.47336 * 60.00118 * 12 11 9 38 38 H 0.96998 * 119.99764 * 359.97438 * 15 13 12 39 39 H 0.97004 * 119.99856 * 179.97438 * 19 18 16 40 40 H 1.09000 * 110.48728 * 216.52541 * 24 7 6 41 41 H 1.08997 * 110.48579 * 93.88229 * 24 7 6 42 42 H 1.08000 * 125.83049 * 180.22704 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2643 1.0980 0.0000 4 6 3.5518 0.6675 -0.0031 5 7 4.6987 1.4835 -0.0062 6 6 6.0759 0.9762 -0.0077 7 6 6.9559 2.1697 -0.4408 8 1 7.9056 2.1686 0.0942 9 6 7.1797 2.1630 -1.9311 10 8 6.7842 1.2315 -2.5995 11 7 7.8192 3.1923 -2.5211 12 6 8.0363 3.1861 -3.9699 13 6 8.7683 4.4401 -4.3735 14 8 9.0777 5.2587 -3.5336 15 7 9.0781 4.6525 -5.6679 16 6 9.7435 5.7935 -6.0352 17 1 10.0191 6.5223 -5.2873 18 6 10.0634 6.0122 -7.3695 19 7 9.7285 5.1251 -8.2794 20 14 10.9694 7.5671 -7.8701 21 1 11.2299 8.3974 -6.6667 22 1 12.2598 7.2042 -8.5093 23 1 10.1393 8.3357 -8.8321 24 6 6.0838 3.3744 -0.0175 25 6 4.6734 2.8274 -0.0115 26 8 3.6661 3.5034 -0.0068 27 6 3.5358 -0.7349 0.0033 28 7 2.2894 -1.1324 0.0052 29 1 -0.3633 0.0042 1.0277 30 1 -0.3634 0.8878 -0.5176 31 1 -0.3633 -0.8921 -0.5101 32 1 1.9355 2.1267 0.0004 33 1 6.1776 0.1555 -0.7178 34 1 6.3536 0.6465 0.9933 35 1 8.1352 3.9375 -1.9865 36 1 8.6306 2.3147 -4.2445 37 1 7.0746 3.1459 -4.4812 38 1 8.8302 3.9981 -6.3396 39 1 9.9515 5.2780 -9.2110 40 1 6.1756 4.1847 -0.7408 41 1 6.3643 3.7172 0.9784 42 1 4.4042 -1.3771 0.0062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336184908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:55 Heat of formation + Delta-G solvation = -16.926181 kcal Electronic energy + Delta-G solvation = -27969.018959 eV Core-core repulsion = 23758.290907 eV Total energy + Delta-G solvation = -4210.728052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76358 -40.68276 -39.25203 -38.16722 -36.47585 -34.57906 -33.98109 -33.69519 -32.54418 -31.42166 -29.52120 -28.19090 -27.69899 -26.69124 -24.80608 -23.35611 -22.26275 -21.11192 -20.01081 -19.60146 -19.55310 -18.22398 -17.86953 -17.73623 -16.37749 -16.18313 -15.76925 -15.56704 -15.41014 -15.28512 -15.14401 -14.65897 -14.49283 -14.11949 -14.03435 -13.89583 -13.70845 -13.39923 -13.26788 -12.92068 -12.78271 -12.62927 -12.28504 -12.13250 -11.91418 -11.79690 -11.66520 -11.17256 -11.13139 -10.46846 -10.43786 -10.36120 -10.04849 -9.86515 -9.68802 -9.65892 -8.93740 -8.69232 -8.14553 -7.84085 -6.55371 -3.97566 1.56456 2.05737 2.09741 2.57789 2.78775 2.92615 3.07638 3.11925 3.20938 3.27785 3.68583 3.94135 3.98493 4.07524 4.33421 4.46003 4.64476 4.73718 4.81110 4.83897 4.86452 5.04341 5.09249 5.13020 5.13596 5.25481 5.35758 5.42176 5.47057 5.51813 5.82962 5.88265 5.90711 6.00576 6.52117 6.53647 6.72601 6.86516 7.40347 7.42642 7.63030 7.87578 7.91471 8.25788 8.40359 9.00527 9.34581 9.81822 10.61436 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021757 B = 0.002094 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.625392 B =13366.073894 C =13579.131083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.376 5.376 3 C 0.038 3.962 4 C 0.013 3.987 5 N -0.529 5.529 6 C 0.116 3.884 7 C -0.123 4.123 8 H 0.133 0.867 9 C 0.516 3.484 10 O -0.539 6.539 11 N -0.702 5.702 12 C 0.108 3.892 13 C 0.427 3.573 14 O -0.597 6.597 15 N -0.548 5.548 16 C -0.305 4.305 17 H 0.107 0.893 18 C 0.025 3.975 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.144 4.144 25 C 0.515 3.485 26 O -0.524 6.524 27 C 0.042 3.958 28 N -0.282 5.282 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 -10.527 17.836 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.161 5.161 3 C -0.109 4.109 4 C -0.090 4.090 5 N -0.256 5.256 6 C -0.006 4.006 7 C -0.145 4.145 8 H 0.151 0.849 9 C 0.301 3.699 10 O -0.416 6.416 11 N -0.356 5.356 12 C -0.019 4.019 13 C 0.212 3.788 14 O -0.484 6.484 15 N -0.183 5.183 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.534 5.534 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.184 4.184 25 C 0.304 3.696 26 O -0.400 6.400 27 C -0.146 4.146 28 N -0.104 5.104 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.205 0.795 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.251 0.749 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.811 -11.274 17.663 24.560 hybrid contribution 1.116 1.391 -0.671 1.906 sum -11.694 -9.882 16.992 22.873 Atomic orbital electron populations 1.21848 0.73521 1.04657 1.03364 1.48316 1.06572 1.03244 1.57981 1.22454 0.89562 0.93937 1.04956 1.17505 0.85925 0.90190 1.15360 1.45087 1.04851 1.05651 1.69983 1.22114 0.78403 0.97209 1.02923 1.22310 1.01370 0.96137 0.94682 0.84898 1.20101 0.78043 0.82486 0.89295 1.90717 1.50553 1.35201 1.65122 1.45648 1.57898 1.23226 1.08803 1.20984 1.01276 0.98561 0.81103 1.19712 0.86347 0.88655 0.84048 1.90498 1.59825 1.47736 1.50366 1.41809 1.49501 1.20905 1.06036 1.19780 1.32348 0.98085 0.93220 0.87560 1.25343 0.97750 0.99232 0.95439 1.69623 1.46273 1.35182 1.02290 0.85749 0.78757 0.80750 0.78785 1.19096 1.20598 1.20587 1.22373 0.91684 0.98348 1.06017 1.20880 0.91650 0.81497 0.75573 1.90673 1.37102 1.62175 1.50020 1.23644 0.95786 0.92579 1.02578 1.77275 1.00821 1.08745 1.23556 0.90731 0.89308 0.89172 0.79466 0.87670 0.89385 0.74937 0.89648 0.89809 0.77031 0.91591 0.86731 0.86051 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.66 11.48 59.85 0.69 1.35 16 2 N -0.38 -4.06 4.04 -67.82 -0.27 -4.34 16 3 C 0.04 0.45 10.69 -16.68 -0.18 0.27 16 4 C 0.01 0.15 6.80 -83.88 -0.57 -0.42 16 5 N -0.53 -6.08 3.16 -112.48 -0.36 -6.44 16 6 C 0.12 0.99 6.30 -3.12 -0.02 0.97 16 7 C -0.12 -1.07 3.54 -90.14 -0.32 -1.39 16 8 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 9 C 0.52 6.93 7.16 -10.98 -0.08 6.85 16 10 O -0.54 -9.00 15.51 5.56 0.09 -8.91 16 11 N -0.70 -10.36 5.25 -61.47 -0.32 -10.68 16 12 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 13 C 0.43 9.40 7.85 -10.98 -0.09 9.31 16 14 O -0.60 -14.63 15.24 5.55 0.08 -14.54 16 15 N -0.55 -13.26 5.29 -10.96 -0.06 -13.32 16 16 C -0.30 -8.13 9.68 -14.94 -0.14 -8.27 16 17 H 0.11 2.95 7.16 -52.48 -0.38 2.58 16 18 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.58 13.05 55.50 0.72 -22.85 16 20 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.14 -1.31 6.39 -26.74 -0.17 -1.48 16 25 C 0.52 6.52 7.98 -10.86 -0.09 6.43 16 26 O -0.52 -8.18 15.64 5.53 0.09 -8.09 16 27 C 0.04 0.47 11.53 -17.22 -0.20 0.27 16 28 N -0.28 -3.43 12.56 30.70 0.39 -3.04 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.19 2.24 6.51 -52.49 -0.34 1.90 16 33 H 0.11 1.01 6.94 -51.93 -0.36 0.65 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.41 5.84 7.25 -40.82 -0.30 5.54 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.40 9.25 7.90 -40.82 -0.32 8.92 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.11 1.17 7.51 -51.93 -0.39 0.78 16 41 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -35.75 366.45 -5.46 -41.21 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: -1.29 Total: 16.30 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.10 Total: -60.68 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: 0.26 Total: -31.55 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.75 -5.46 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336184908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.286 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds