Wall clock time and date at job start Tue Mar 31 2020 18:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99770 * 2 1 4 4 C 1.52998 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47320 * 65.00041 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46956 * 89.99765 * 11 9 7 13 13 H 1.48497 * 109.47226 * 210.00189 * 11 9 7 14 14 H 1.48501 * 109.47027 * 329.99834 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 N 1.46491 * 109.46957 * 179.72354 * 17 15 5 19 19 N 1.39870 * 120.10852 * 269.72663 * 18 17 15 20 20 C 1.29034 * 122.19253 * 179.68339 * 19 18 17 21 21 N 1.37705 * 121.78675 * 0.60149 * 20 19 18 22 22 N 1.39937 * 133.10497 * 179.72050 * 21 20 19 23 23 C 1.31296 * 108.84195 * 179.97438 * 22 21 20 24 24 C 1.39091 * 108.91970 * 0.02562 * 23 22 21 25 25 C 1.37315 * 119.55725 * 359.69585 * 21 20 19 26 26 C 1.35305 * 120.11352 * 90.00139 * 18 17 15 27 27 O 1.21810 * 121.03735 * 0.02562 * 26 18 17 28 28 H 1.09000 * 109.47260 * 300.00210 * 1 2 3 29 29 H 1.08999 * 109.47112 * 60.00586 * 1 2 3 30 30 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47691 * 59.99666 * 3 2 1 32 32 H 1.08999 * 109.46539 * 299.99231 * 3 2 1 33 33 H 1.08994 * 109.47354 * 304.99932 * 4 3 2 34 34 H 1.09001 * 109.47139 * 184.99506 * 4 3 2 35 35 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 36 36 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 37 37 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 39 39 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 40 40 H 1.08004 * 119.10830 * 180.29537 * 20 19 18 41 41 H 1.07999 * 125.53761 * 180.02562 * 23 22 21 42 42 H 1.08003 * 126.21200 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2981 -0.9411 8 1 6.2201 -0.5462 -0.6497 9 6 5.8614 -2.6292 -0.9480 10 7 4.9868 -3.5449 -1.3034 11 14 7.5909 -3.1319 -0.4526 12 1 7.6331 -3.3844 1.0101 13 1 7.9743 -4.3686 -1.1798 14 1 8.5402 -2.0423 -0.7945 15 6 4.2633 1.3328 -2.3201 16 8 4.6282 0.8188 -3.3563 17 6 4.1360 2.8315 -2.2263 18 7 4.5076 3.4343 -3.5087 19 7 5.8347 3.8030 -3.7523 20 6 6.2074 4.3312 -4.8690 21 7 5.3154 4.5765 -5.8890 22 7 5.4524 5.1306 -7.1666 23 6 4.2776 5.1406 -7.7527 24 6 3.3360 4.5975 -6.8849 25 6 3.9922 4.2479 -5.7252 26 6 3.5673 3.6415 -4.4592 27 8 2.4039 3.3342 -4.2694 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8508 0.5686 0.8426 34 1 3.9785 2.1765 0.0901 35 1 3.3858 -1.3632 -0.6712 36 1 3.9139 -1.2124 -2.3644 37 1 5.2397 -4.4812 -1.3079 38 1 3.1057 3.0943 -1.9862 39 1 4.7976 3.2041 -1.4443 40 1 7.2464 4.5926 -5.0056 41 1 4.0753 5.5105 -8.7470 42 1 2.2821 4.4716 -7.0846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362218093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:56 Heat of formation + Delta-G solvation = 9.972140 kcal Electronic energy + Delta-G solvation = -29277.031785 eV Core-core repulsion = 25067.470132 eV Total energy + Delta-G solvation = -4209.561653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.29262 -41.31951 -40.24412 -38.79531 -38.59150 -36.61900 -35.21370 -34.73204 -32.24206 -32.02081 -31.16257 -29.97763 -28.36113 -27.12038 -25.49743 -25.41351 -24.35218 -23.84255 -22.51182 -20.83920 -20.40491 -19.04300 -18.70734 -18.48762 -18.12060 -17.47073 -17.13176 -16.98573 -16.80570 -16.64986 -16.24694 -16.18098 -15.75846 -15.54550 -15.41744 -14.83119 -14.58120 -14.47858 -14.26735 -13.95282 -13.61025 -13.50440 -13.27291 -13.07685 -12.93449 -12.81325 -12.75192 -12.55533 -12.41328 -12.20478 -11.97197 -11.71250 -11.65653 -11.47150 -10.84120 -10.63763 -10.60893 -10.54590 -9.54115 -9.49594 -8.20646 -6.35830 -0.60956 0.28849 0.50695 1.01155 1.35416 1.39209 1.49101 1.49344 1.64825 1.87090 2.26037 2.40461 2.43010 2.95125 3.09084 3.15547 3.46699 3.71786 3.86133 3.94683 4.02543 4.14171 4.17666 4.28883 4.37803 4.42109 4.51257 4.52940 4.57318 4.59530 4.73293 4.84226 4.93701 5.06338 5.14137 5.25871 5.35572 5.54423 5.82470 6.07357 6.07876 6.27873 6.31878 6.58858 6.67356 6.75282 7.23180 7.38390 8.87074 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011003 B = 0.003750 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.126485 B = 7465.032892 C = 9162.989888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.041 3.959 4 C 0.099 3.901 5 N -0.588 5.588 6 C 0.275 3.725 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.971 3.029 12 H -0.261 1.261 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.482 3.518 16 O -0.593 6.593 17 C 0.124 3.876 18 N -0.423 5.423 19 N -0.275 5.275 20 C 0.338 3.662 21 N -0.347 5.347 22 N -0.257 5.257 23 C 0.083 3.917 24 C -0.153 4.153 25 C -0.024 4.024 26 C 0.552 3.448 27 O -0.533 6.533 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.030 0.970 36 H -0.020 1.020 37 H 0.266 0.734 38 H 0.141 0.859 39 H 0.161 0.839 40 H 0.274 0.726 41 H 0.257 0.743 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 23.232 -3.810 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.337 6.337 3 C -0.036 4.036 4 C -0.023 4.023 5 N -0.319 5.319 6 C 0.153 3.847 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.195 4.195 10 N -0.571 5.571 11 Si 0.795 3.205 12 H -0.186 1.186 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.270 3.730 16 O -0.474 6.474 17 C 0.000 4.000 18 N -0.242 5.242 19 N -0.088 5.088 20 C 0.041 3.959 21 N -0.133 5.133 22 N -0.079 5.079 23 C -0.102 4.102 24 C -0.185 4.185 25 C -0.148 4.148 26 C 0.340 3.660 27 O -0.406 6.406 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.048 0.952 36 H -0.002 1.002 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.178 0.822 40 H 0.289 0.711 41 H 0.272 0.728 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.484 22.372 -3.335 22.756 hybrid contribution -0.792 -1.060 -0.494 1.412 sum -3.276 21.313 -3.829 21.900 Atomic orbital electron populations 1.22846 0.80104 1.03044 1.00750 1.88038 1.21102 1.29006 1.95522 1.23243 0.93616 0.84905 1.01865 1.22046 0.93126 1.00728 0.86421 1.48118 1.63825 1.08001 1.11937 1.18634 0.95846 0.75461 0.94727 1.21747 0.98103 0.92721 1.45460 0.92430 1.25926 1.02053 0.96386 0.95087 1.70096 1.36758 1.01414 1.48790 0.85370 0.78770 0.77517 0.78854 1.18607 1.20886 1.19479 1.21453 0.77497 0.90551 0.83546 1.90652 1.49061 1.76024 1.31686 1.21701 1.05867 0.88321 0.84116 1.48536 1.03182 1.56266 1.16186 1.74669 0.98105 1.16455 1.19532 1.26144 0.98124 0.92543 0.79048 1.47691 1.06086 1.46107 1.13465 1.77562 1.24151 1.17694 0.88481 1.25001 0.87382 0.96068 1.01780 1.22163 1.03305 1.02986 0.90027 1.21983 0.87672 1.07129 0.98001 1.18136 0.85746 0.78898 0.83233 1.90877 1.17958 1.52575 1.79211 0.91552 0.94292 0.90118 0.88238 0.93540 0.89546 0.85017 0.95200 1.00170 0.92569 0.84185 0.82180 0.71119 0.72768 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.42 -14.79 9.53 -148.98 -1.42 -16.21 16 3 C 0.04 1.10 6.28 71.98 0.45 1.56 16 4 C 0.10 3.02 5.62 86.38 0.49 3.50 16 5 N -0.59 -26.06 2.42 -826.15 -2.00 -28.05 16 6 C 0.27 15.80 4.98 85.63 0.43 16.23 16 7 C -0.54 -32.41 9.39 25.60 0.24 -32.17 16 8 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 9 C 0.00 0.24 5.46 84.66 0.46 0.70 16 10 N -0.93 -59.03 13.29 21.45 0.28 -58.75 16 11 Si 0.97 46.24 29.54 68.60 2.03 48.26 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 15 C 0.48 21.35 7.74 87.66 0.68 22.03 16 16 O -0.59 -33.34 16.01 -3.04 -0.05 -33.39 16 17 C 0.12 3.79 4.78 85.64 0.41 4.20 16 18 N -0.42 -13.77 3.01 -469.99 -1.41 -15.19 16 19 N -0.28 -7.66 11.42 -59.38 -0.68 -8.34 16 20 C 0.34 7.26 12.49 179.81 2.25 9.50 16 21 N -0.35 -8.27 3.98 -186.71 -0.74 -9.01 16 22 N -0.26 -5.03 12.67 -57.29 -0.73 -5.76 16 23 C 0.08 1.16 11.96 84.98 1.02 2.18 16 24 C -0.15 -3.02 10.89 22.36 0.24 -2.78 16 25 C -0.02 -0.67 7.01 40.37 0.28 -0.39 16 26 C 0.55 18.89 7.74 86.36 0.67 19.56 16 27 O -0.53 -20.69 16.85 -4.70 -0.08 -20.77 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.25 7.33 -2.39 -0.02 1.23 16 33 H 0.09 2.84 8.07 -2.39 -0.02 2.82 16 34 H 0.13 2.60 6.43 -2.39 -0.02 2.58 16 35 H 0.03 1.80 7.11 -2.39 -0.02 1.78 16 36 H -0.02 -1.35 7.42 -2.38 -0.02 -1.37 16 37 H 0.27 15.75 8.31 -92.72 -0.77 14.98 16 38 H 0.14 3.65 6.63 -2.38 -0.02 3.64 16 39 H 0.16 3.52 7.40 -2.39 -0.02 3.50 16 40 H 0.27 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.26 0.68 8.06 -2.91 -0.02 0.65 16 42 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -96.60 368.63 5.12 -91.47 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.06 Total: 9.60 kcal Atomic # 6 Polarization: 37.27 SS G_CDS: 8.86 Total: 46.13 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -5.27 Total: -125.10 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -1.55 Total: -70.37 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -96.60 5.12 -91.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362218093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.445 kcal (2) G-P(sol) polarization free energy of solvation -96.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds