Wall clock time and date at job start Tue Mar 31 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34782 * 119.86434 * 2 1 4 4 N 1.30480 * 121.69542 * 179.68152 * 3 2 1 5 5 C 1.34163 * 121.31962 * 0.63304 * 4 3 2 6 6 N 1.38531 * 120.21916 * 179.67636 * 5 4 3 7 7 C 1.34773 * 119.99869 * 359.72373 * 6 5 4 8 8 O 1.21567 * 120.00074 * 354.87887 * 7 6 5 9 9 N 1.34775 * 120.00076 * 174.87792 * 7 6 5 10 10 C 1.46967 * 120.59396 * 5.05671 * 9 7 6 11 11 C 1.53367 * 108.63769 * 235.24790 * 10 9 7 12 12 N 1.46967 * 108.63506 * 310.57738 * 11 10 9 13 13 C 1.34778 * 120.59245 * 235.20199 * 12 11 10 14 14 O 1.21681 * 120.00167 * 5.22417 * 13 12 11 15 15 C 1.46373 * 119.99774 * 185.22776 * 13 12 11 16 16 H 1.07999 * 120.00169 * 354.97991 * 15 13 12 17 17 C 1.40054 * 120.00129 * 174.97789 * 15 13 12 18 18 N 1.30671 * 119.99662 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00229 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46880 * 270.00282 * 19 17 15 21 21 H 1.48493 * 109.46836 * 30.00152 * 19 17 15 22 22 H 1.48494 * 109.46988 * 150.00292 * 19 17 15 23 23 C 1.46965 * 118.81271 * 55.47763 * 12 11 10 24 24 C 1.46967 * 120.59454 * 185.08106 * 9 7 6 25 25 C 1.38327 * 119.56199 * 359.40190 * 5 4 3 26 26 C 1.34947 * 119.86426 * 180.02562 * 2 1 3 27 27 O 1.22063 * 120.64745 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47334 * 269.97850 * 1 2 3 29 29 H 1.08998 * 109.46614 * 29.98250 * 1 2 3 30 30 H 1.08997 * 109.47061 * 149.97705 * 1 2 3 31 31 H 1.07997 * 119.15603 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00299 * 179.71841 * 6 5 4 33 33 H 1.09001 * 109.60504 * 115.50405 * 10 9 7 34 34 H 1.09000 * 109.60951 * 354.99449 * 10 9 7 35 35 H 1.08998 * 109.61068 * 190.83168 * 11 10 9 36 36 H 1.09004 * 109.61035 * 70.32106 * 11 10 9 37 37 H 0.96999 * 120.00010 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.60803 * 64.26552 * 23 12 11 39 39 H 1.09001 * 109.61057 * 184.77703 * 23 12 11 40 40 H 1.08995 * 109.61013 * 244.49576 * 24 9 7 41 41 H 1.09003 * 109.61019 * 4.83783 * 24 9 7 42 42 H 1.08003 * 120.77640 * 180.25786 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1362 1.1688 0.0000 4 7 3.4403 1.2105 0.0062 5 6 4.1740 0.0873 0.0002 6 7 5.5575 0.1582 0.0002 7 6 6.1707 1.3584 0.0006 8 8 5.5135 2.3768 -0.0930 9 7 7.5125 1.4295 0.1048 10 6 8.3284 0.2071 0.1074 11 6 9.1974 0.2004 1.3711 12 7 9.8709 1.5017 1.4847 13 6 11.2127 1.5727 1.5898 14 8 11.8847 0.5627 1.4958 15 6 11.8616 2.8650 1.8171 16 1 11.2741 3.7712 1.8198 17 6 13.2443 2.9262 2.0313 18 7 13.9552 1.8298 2.0276 19 14 14.0725 4.5754 2.3206 20 1 14.4992 5.1501 1.0195 21 1 13.1165 5.5003 2.9806 22 1 15.2602 4.3867 3.1917 23 6 9.0547 2.7239 1.4879 24 6 8.1861 2.7308 0.2185 25 6 3.5399 -1.1420 -0.0003 26 6 2.1370 -1.1703 -0.0005 27 8 1.5362 -2.2328 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3632 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.5803 2.0948 0.0004 32 1 6.0849 -0.6558 -0.0001 33 1 8.9670 0.1917 -0.7758 34 1 7.6775 -0.6672 0.1064 35 1 9.9423 -0.5920 1.2986 36 1 8.5689 0.0361 2.2464 37 1 14.9129 1.8722 2.1755 38 1 8.4162 2.7350 2.3713 39 1 9.7053 3.5983 1.4926 40 1 8.8146 2.8951 -0.6568 41 1 7.4411 3.5235 0.2879 42 1 4.1113 -2.0586 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364143525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:52 Heat of formation + Delta-G solvation = -9.063172 kcal Electronic energy + Delta-G solvation = -28583.407741 eV Core-core repulsion = 24373.020655 eV Total energy + Delta-G solvation = -4210.387086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05387 -40.57863 -38.45656 -37.63287 -36.38606 -35.76062 -34.13430 -33.00012 -32.55545 -31.11393 -30.70407 -28.17061 -27.22144 -26.06958 -25.00974 -23.92273 -23.18293 -22.09938 -20.61932 -19.69897 -18.69458 -18.06982 -17.48502 -17.26111 -16.68917 -16.43422 -15.91771 -15.74998 -15.55069 -14.89299 -14.67725 -14.60003 -14.31620 -14.14798 -14.00668 -13.84455 -13.77260 -13.50361 -13.08475 -12.92711 -12.62661 -12.13086 -11.77145 -11.56859 -11.49126 -11.24005 -11.07749 -11.02534 -10.81214 -10.65297 -10.38838 -10.31761 -10.16088 -9.69014 -9.61738 -8.97882 -8.76642 -8.45876 -7.72705 -7.34506 -6.30369 -4.76009 0.36568 1.68326 2.08628 2.31419 2.99421 3.08242 3.15794 3.18401 3.36217 3.54920 3.87636 3.99612 4.29237 4.35515 4.40047 4.44859 4.74549 4.81230 5.03599 5.05422 5.19182 5.22998 5.27637 5.33154 5.46974 5.53875 5.68492 5.79741 5.85449 5.97666 6.13875 6.21873 6.24899 6.34291 6.43099 6.49892 6.70945 7.35549 7.38134 7.42640 7.66637 7.76194 7.98739 8.20287 8.40238 8.91861 9.26761 10.44633 10.63407 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033151 B = 0.002254 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.429971 B =12420.179805 C =13054.780738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.536 5.536 3 C 0.395 3.605 4 N -0.514 5.514 5 C 0.445 3.555 6 N -0.661 5.661 7 C 0.696 3.304 8 O -0.529 6.529 9 N -0.615 5.615 10 C 0.095 3.905 11 C 0.107 3.893 12 N -0.643 5.643 13 C 0.559 3.441 14 O -0.576 6.576 15 C -0.544 4.544 16 H 0.074 0.926 17 C 0.088 3.912 18 N -0.766 5.766 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.264 1.264 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.113 3.887 25 C -0.364 4.364 26 C 0.534 3.466 27 O -0.551 6.551 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.210 0.790 32 H 0.418 0.582 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.270 0.730 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.500 0.371 -4.302 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.255 5.255 3 C 0.108 3.892 4 N -0.238 5.238 5 C 0.225 3.775 6 N -0.309 5.309 7 C 0.397 3.603 8 O -0.401 6.401 9 N -0.353 5.353 10 C -0.029 4.029 11 C -0.019 4.019 12 N -0.381 5.381 13 C 0.365 3.635 14 O -0.459 6.459 15 C -0.580 4.580 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.394 5.394 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.188 1.188 22 H -0.204 1.204 23 C -0.016 4.016 24 C -0.010 4.010 25 C -0.394 4.394 26 C 0.336 3.664 27 O -0.431 6.431 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.226 0.774 32 H 0.259 0.741 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.060 0.473 -4.374 22.495 hybrid contribution 0.362 -0.386 0.162 0.553 sum -21.698 0.088 -4.212 22.104 Atomic orbital electron populations 1.22173 0.76781 1.05254 1.04210 1.46817 1.10608 1.08399 1.59688 1.25038 0.88540 0.89981 0.85595 1.68507 1.03435 1.27922 1.23951 1.18358 0.83853 0.89227 0.86109 1.42958 1.03800 1.10235 1.73869 1.15917 0.82299 0.83279 0.78784 1.91012 1.63168 1.32287 1.53621 1.47400 1.03254 1.08948 1.75656 1.22219 0.94114 0.85328 1.01238 1.21480 0.95647 0.90449 0.94298 1.48193 1.06983 1.03265 1.79698 1.18293 0.78149 0.90686 0.76332 1.90596 1.61803 1.37964 1.55494 1.20954 0.92633 0.92143 1.52281 0.90797 1.25736 0.97430 0.97329 0.92781 1.70001 1.06841 1.27972 1.34634 0.86367 0.79131 0.82445 0.78853 1.19644 1.18794 1.20436 1.21949 0.93755 0.90980 0.94941 1.22205 0.95877 0.83309 0.99616 1.22195 0.93439 0.97836 1.25934 1.16585 0.88191 0.82929 0.78697 1.90955 1.70272 1.28272 1.53616 0.90280 0.89222 0.88722 0.77413 0.74110 0.90304 0.91111 0.88340 0.93438 0.91964 0.93353 0.87437 0.90930 0.88539 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 10.39 59.85 0.62 0.88 16 2 N -0.54 -4.37 2.97 -128.82 -0.38 -4.75 16 3 C 0.39 2.98 11.46 -90.63 -1.04 1.94 16 4 N -0.51 -6.11 7.95 -13.47 -0.11 -6.22 16 5 C 0.44 5.36 7.42 -154.25 -1.15 4.21 16 6 N -0.66 -7.79 5.28 -15.81 -0.08 -7.88 16 7 C 0.70 10.15 8.25 -86.92 -0.72 9.43 16 8 O -0.53 -9.09 14.03 5.31 0.07 -9.01 16 9 N -0.62 -8.83 2.95 -177.94 -0.52 -9.36 16 10 C 0.10 1.27 6.59 -3.60 -0.02 1.25 16 11 C 0.11 1.83 6.60 -3.60 -0.02 1.81 16 12 N -0.64 -13.43 2.94 -173.87 -0.51 -13.94 16 13 C 0.56 14.90 7.62 -12.99 -0.10 14.80 16 14 O -0.58 -17.59 14.45 5.21 0.08 -17.51 16 15 C -0.54 -14.37 8.87 -35.63 -0.32 -14.68 16 16 H 0.07 1.76 5.66 -52.49 -0.30 1.46 16 17 C 0.09 2.32 5.50 -17.36 -0.10 2.23 16 18 N -0.77 -22.03 11.84 55.55 0.66 -21.37 16 19 Si 0.91 19.23 29.56 -169.99 -5.02 14.20 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C 0.11 1.89 6.51 -3.36 -0.02 1.87 16 24 C 0.11 1.71 6.60 -3.36 -0.02 1.69 16 25 C -0.36 -4.17 9.94 -38.77 -0.39 -4.56 16 26 C 0.53 6.44 7.42 -15.40 -0.11 6.32 16 27 O -0.55 -8.36 16.76 4.86 0.08 -8.28 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.08 8.01 -51.93 -0.42 -0.34 16 30 H 0.09 0.55 7.44 -51.93 -0.39 0.16 16 31 H 0.21 0.55 8.01 -52.49 -0.42 0.13 16 32 H 0.42 3.81 6.15 -40.82 -0.25 3.56 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.68 5.55 -51.93 -0.29 0.39 16 35 H 0.10 1.88 6.99 -51.93 -0.36 1.52 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.11 1.92 5.34 -51.93 -0.28 1.64 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.10 1.40 7.02 -51.93 -0.36 1.04 16 42 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 350.44 15.07 5.28 5.28 Total: -1.00 -39.38 350.44 -8.58 -47.96 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.73 Total: 3.68 kcal Atomic # 6 Polarization: 30.57 SS G_CDS: -3.38 Total: 27.19 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.95 Total: -63.51 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: 0.23 Total: -34.80 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -39.38 -8.58 -47.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364143525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.899 kcal (2) G-P(sol) polarization free energy of solvation -39.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds