Wall clock time and date at job start Tue Mar 31 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37596 * 119.59877 * 2 1 4 4 N 1.35907 * 134.43354 * 0.32995 * 3 2 1 5 5 H 0.96998 * 126.20639 * 359.95435 * 4 3 2 6 6 C 1.36456 * 107.58454 * 180.02562 * 4 3 2 7 7 C 1.50701 * 125.22764 * 179.89153 * 6 4 3 8 8 N 1.46900 * 109.47034 * 94.71974 * 7 6 4 9 9 C 1.47964 * 110.99873 * 189.99925 * 8 7 6 10 10 C 1.53936 * 86.17896 * 222.41598 * 9 8 7 11 11 O 1.42894 * 113.73695 * 269.25386 * 10 9 8 12 12 C 1.50710 * 113.72850 * 138.07690 * 10 9 8 13 13 H 1.07993 * 120.00160 * 6.89305 * 12 10 9 14 14 C 1.37874 * 119.99500 * 186.88767 * 12 10 9 15 15 N 1.31522 * 119.99594 * 178.34163 * 14 12 10 16 16 Si 1.86798 * 120.00325 * 358.34373 * 14 12 10 17 17 H 1.48495 * 109.47265 * 269.99805 * 16 14 12 18 18 H 1.48505 * 109.47143 * 29.99904 * 16 14 12 19 19 H 1.48499 * 109.47179 * 149.99934 * 16 14 12 20 20 C 1.48192 * 111.06814 * 90.56898 * 8 7 6 21 21 N 1.30166 * 109.54466 * 359.63094 * 6 4 3 22 22 C 1.35463 * 109.08610 * 0.22410 * 21 6 4 23 23 C 1.46385 * 134.29821 * 180.02562 * 22 21 6 24 24 O 1.21740 * 120.75540 * 359.97379 * 23 22 21 25 25 N 1.35064 * 118.49262 * 180.02562 * 23 22 21 26 26 C 1.46499 * 119.54101 * 180.02562 * 25 23 22 27 27 C 1.34336 * 120.91676 * 359.96937 * 25 23 22 28 28 O 1.21598 * 118.84885 * 180.02562 * 27 25 23 29 29 H 1.08998 * 109.47406 * 89.99769 * 1 2 3 30 30 H 1.09001 * 109.46936 * 209.99895 * 1 2 3 31 31 H 1.09000 * 109.47386 * 329.99751 * 1 2 3 32 32 H 1.09007 * 109.47051 * 334.71836 * 7 6 4 33 33 H 1.09000 * 109.47364 * 214.72274 * 7 6 4 34 34 H 1.09002 * 113.75665 * 108.09615 * 9 8 7 35 35 H 1.09000 * 113.75903 * 336.73679 * 9 8 7 36 36 H 0.96694 * 114.00278 * 162.48386 * 11 10 9 37 37 H 0.96996 * 120.00167 * 358.20463 * 15 14 12 38 38 H 1.08996 * 113.75836 * 23.23806 * 20 8 7 39 39 H 1.09005 * 113.81861 * 251.80777 * 20 8 7 40 40 H 1.09000 * 109.47565 * 269.96059 * 26 25 23 41 41 H 1.09005 * 109.46901 * 29.96356 * 26 25 23 42 42 H 1.08997 * 109.47310 * 149.95897 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1446 1.1964 0.0000 4 7 1.7707 2.5030 0.0056 5 1 0.8606 2.8386 0.0105 6 6 2.9079 3.2572 0.0015 7 6 2.9520 4.7636 0.0030 8 7 3.0863 5.2481 1.3833 9 6 2.8941 6.7136 1.4518 10 6 4.0907 6.7217 2.4201 11 8 3.7202 6.5873 3.7936 12 6 5.0572 7.8529 2.1805 13 1 4.8188 8.6239 1.4629 14 6 6.2457 7.9035 2.8775 15 7 7.1037 8.8728 2.6449 16 14 6.6373 6.5954 4.1523 17 1 6.1283 7.0284 5.4783 18 1 5.9874 5.3173 3.7658 19 1 8.1076 6.4006 4.2260 20 6 4.5119 5.3966 1.7594 21 7 3.9488 2.4756 0.0016 22 6 3.5343 1.1860 0.0008 23 6 4.2190 -0.1079 0.0009 24 8 5.4348 -0.1689 0.0015 25 7 3.4711 -1.2326 -0.0007 26 6 4.1325 -2.5398 0.0000 27 6 2.1292 -1.1692 -0.0017 28 8 1.4929 -2.2054 -0.0027 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.0318 5.1544 -0.4314 33 1 3.8043 5.1028 -0.5857 34 1 1.9531 7.0120 1.9140 35 1 3.0879 7.2265 0.5098 36 1 4.4482 6.3255 4.3737 37 1 6.9122 9.5372 1.9647 38 1 5.1799 5.5235 0.9075 39 1 4.8612 4.6446 2.4670 40 1 4.2976 -2.8641 -1.0274 41 1 5.0901 -2.4622 0.5150 42 1 3.5019 -3.2658 0.5132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364396826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:18 Heat of formation + Delta-G solvation = 28.657745 kcal Electronic energy + Delta-G solvation = -29231.933198 eV Core-core repulsion = 25023.181813 eV Total energy + Delta-G solvation = -4208.751384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.17640 -41.36072 -39.38512 -39.23253 -36.75436 -35.51253 -34.88502 -33.16380 -32.52345 -31.23002 -29.61375 -27.62456 -27.18258 -25.82993 -25.52355 -23.72436 -23.42466 -22.28726 -21.19652 -19.90147 -19.15537 -18.56310 -18.00129 -17.88069 -17.63772 -16.49555 -16.04940 -15.87820 -15.71830 -15.59616 -15.26422 -15.08938 -14.72557 -14.33438 -14.13185 -13.65934 -13.45485 -13.23644 -13.14192 -13.05246 -12.69488 -12.51761 -12.19027 -11.79868 -11.49997 -11.45734 -11.22108 -11.04781 -10.70575 -10.54857 -10.45766 -10.29671 -10.24100 -10.06621 -9.58202 -9.40244 -8.72848 -8.71188 -8.21855 -8.17328 -6.59017 -4.36261 0.99563 1.19699 1.45313 2.16271 2.36607 2.72468 3.23901 3.27723 3.28892 3.44553 3.71837 4.08810 4.30777 4.32915 4.42994 4.62605 4.70147 4.74385 4.91806 4.96158 5.03117 5.05922 5.09294 5.19193 5.37915 5.42059 5.44243 5.50470 5.71203 5.81899 5.84490 5.98969 6.10164 6.31900 6.59172 6.60014 6.74902 6.82589 6.93914 7.18775 7.43103 7.49707 7.68216 7.74740 8.15538 8.60648 8.69395 9.39069 10.75664 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.003075 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.760119 B = 9104.199771 C = 9936.737623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.516 5.516 3 C 0.261 3.739 4 N -0.547 5.547 5 H 0.427 0.573 6 C 0.262 3.738 7 C 0.097 3.903 8 N -0.479 5.479 9 C 0.026 3.974 10 C 0.202 3.798 11 O -0.556 6.556 12 C -0.609 4.609 13 H 0.066 0.934 14 C 0.036 3.964 15 N -0.897 5.897 16 Si 1.034 2.966 17 H -0.277 1.277 18 H -0.267 1.267 19 H -0.283 1.283 20 C -0.023 4.023 21 N -0.399 5.399 22 C -0.090 4.090 23 C 0.595 3.405 24 O -0.480 6.480 25 N -0.556 5.556 26 C 0.084 3.916 27 C 0.716 3.284 28 O -0.539 6.539 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.351 0.649 37 H 0.271 0.729 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.726 -18.031 -7.574 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.245 5.245 3 C 0.041 3.959 4 N -0.157 5.157 5 H 0.267 0.733 6 C -0.004 4.004 7 C -0.033 4.033 8 N -0.203 5.203 9 C -0.102 4.102 10 C 0.161 3.839 11 O -0.365 6.365 12 C -0.647 4.647 13 H 0.084 0.916 14 C -0.170 4.170 15 N -0.530 5.530 16 Si 0.863 3.137 17 H -0.204 1.204 18 H -0.194 1.194 19 H -0.210 1.210 20 C -0.152 4.152 21 N -0.116 5.116 22 C -0.222 4.222 23 C 0.386 3.614 24 O -0.351 6.351 25 N -0.301 5.301 26 C -0.056 4.056 27 C 0.419 3.581 28 O -0.413 6.413 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.201 0.799 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.366 -19.242 -6.360 24.276 hybrid contribution -1.622 0.837 -1.542 2.389 sum -14.988 -18.405 -7.902 25.016 Atomic orbital electron populations 1.22045 0.75177 1.05247 1.03959 1.43605 1.08494 1.00997 1.71396 1.18045 0.91966 0.81275 1.04586 1.42580 1.11663 1.02614 1.58801 0.73282 1.23485 0.78180 0.95318 1.03389 1.21165 1.03595 0.83388 0.95169 1.68598 1.19612 1.15164 1.16941 1.23976 1.00395 0.86773 0.99070 1.20461 0.91860 0.92000 0.79547 1.86428 1.39142 1.91961 1.19016 1.22355 1.03895 1.10902 1.27581 0.91557 1.25782 0.92533 0.99731 0.98999 1.70798 1.36986 1.13257 1.31988 0.84263 0.77237 0.75835 0.76349 1.20352 1.19351 1.20951 1.25259 0.88176 1.00536 1.01252 1.70238 1.27916 0.97933 1.15512 1.20156 0.87354 0.93367 1.21306 1.16932 0.86548 0.81929 0.76002 1.90890 1.12184 1.86394 1.45612 1.45909 1.05566 1.10216 1.68403 1.21958 0.98966 0.80551 1.04164 1.15206 0.81712 0.82758 0.78423 1.91018 1.65329 1.29787 1.55158 0.90552 0.87985 0.90153 0.89232 0.89570 0.89952 0.90678 0.79887 0.91886 0.90188 0.90283 0.90623 0.88601 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 10.35 59.85 0.62 1.06 16 2 N -0.52 -5.09 3.03 -128.00 -0.39 -5.48 16 3 C 0.26 3.02 7.68 -153.34 -1.18 1.84 16 4 N -0.55 -5.45 6.10 -9.06 -0.06 -5.51 16 5 H 0.43 2.55 8.80 -40.82 -0.36 2.19 16 6 C 0.26 3.59 7.68 -154.39 -1.19 2.41 16 7 C 0.10 1.31 5.42 -4.98 -0.03 1.28 16 8 N -0.48 -8.35 6.14 -239.47 -1.47 -9.82 16 9 C 0.03 0.48 7.34 -2.76 -0.02 0.46 16 10 C 0.20 4.62 1.06 -90.83 -0.10 4.52 16 11 O -0.56 -13.11 13.26 -35.23 -0.47 -13.58 16 12 C -0.61 -16.22 9.05 -34.44 -0.31 -16.54 16 13 H 0.07 1.87 8.04 -52.49 -0.42 1.44 16 14 C 0.04 1.01 5.47 -17.82 -0.10 0.91 16 15 N -0.90 -26.53 13.70 55.43 0.76 -25.77 16 16 Si 1.03 23.89 24.77 -169.99 -4.21 19.68 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.69 4.71 56.52 0.27 -5.42 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.02 -0.49 6.21 -2.63 -0.02 -0.51 16 21 N -0.40 -6.74 11.30 -6.83 -0.08 -6.82 16 22 C -0.09 -1.38 7.42 -82.71 -0.61 -1.99 16 23 C 0.59 9.01 7.63 -12.85 -0.10 8.91 16 24 O -0.48 -8.58 16.75 5.15 0.09 -8.49 16 25 N -0.56 -6.73 2.96 -129.84 -0.38 -7.12 16 26 C 0.08 0.76 10.09 59.85 0.60 1.36 16 27 C 0.72 8.29 8.10 -87.58 -0.71 7.58 16 28 O -0.54 -6.70 15.16 5.28 0.08 -6.62 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.59 7.34 -51.93 -0.38 0.21 16 31 H 0.08 0.29 7.83 -51.93 -0.41 -0.12 16 32 H 0.09 0.88 8.08 -51.92 -0.42 0.46 16 33 H 0.09 1.22 7.39 -51.93 -0.38 0.83 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.30 7.87 -51.93 -0.41 0.89 16 36 H 0.35 7.81 4.33 45.56 0.20 8.01 16 37 H 0.27 7.92 8.71 -40.82 -0.36 7.57 16 38 H 0.08 1.69 7.44 -51.93 -0.39 1.30 16 39 H 0.08 1.73 6.55 -51.93 -0.34 1.39 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.85 7.42 -51.93 -0.39 0.46 16 42 H 0.09 0.74 7.33 -51.93 -0.38 0.36 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -35.59 347.15 -8.66 -44.25 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.63 Total: 8.74 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -3.13 Total: 11.30 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -1.62 Total: -60.51 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.30 Total: -28.70 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.21 Total: 19.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.59 -8.66 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364396826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.909 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds