Wall clock time and date at job start Tue Mar 31 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37596 * 119.59877 * 2 1 4 4 N 1.35907 * 134.43354 * 0.32995 * 3 2 1 5 5 H 0.96998 * 126.20639 * 359.95435 * 4 3 2 6 6 C 1.36456 * 107.58454 * 180.02562 * 4 3 2 7 7 C 1.50701 * 125.22764 * 179.89153 * 6 4 3 8 8 N 1.46900 * 109.47034 * 94.71974 * 7 6 4 9 9 C 1.47964 * 110.99873 * 189.99925 * 8 7 6 10 10 C 1.53936 * 86.17896 * 222.41598 * 9 8 7 11 11 O 1.42894 * 113.73695 * 269.25386 * 10 9 8 12 12 C 1.50710 * 113.72850 * 138.07690 * 10 9 8 13 13 H 1.07993 * 120.00160 * 6.89305 * 12 10 9 14 14 C 1.37874 * 119.99500 * 186.88767 * 12 10 9 15 15 N 1.31522 * 119.99594 * 178.34163 * 14 12 10 16 16 Si 1.86798 * 120.00325 * 358.34373 * 14 12 10 17 17 H 1.48495 * 109.47265 * 269.99805 * 16 14 12 18 18 H 1.48505 * 109.47143 * 29.99904 * 16 14 12 19 19 H 1.48499 * 109.47179 * 149.99934 * 16 14 12 20 20 C 1.48192 * 111.06814 * 90.56898 * 8 7 6 21 21 N 1.30166 * 109.54466 * 359.63094 * 6 4 3 22 22 C 1.35463 * 109.08610 * 0.22410 * 21 6 4 23 23 C 1.46385 * 134.29821 * 180.02562 * 22 21 6 24 24 O 1.21740 * 120.75540 * 359.97379 * 23 22 21 25 25 N 1.35064 * 118.49262 * 180.02562 * 23 22 21 26 26 C 1.46499 * 119.54101 * 180.02562 * 25 23 22 27 27 C 1.34336 * 120.91676 * 359.96937 * 25 23 22 28 28 O 1.21598 * 118.84885 * 180.02562 * 27 25 23 29 29 H 1.08998 * 109.47406 * 89.99769 * 1 2 3 30 30 H 1.09001 * 109.46936 * 209.99895 * 1 2 3 31 31 H 1.09000 * 109.47386 * 329.99751 * 1 2 3 32 32 H 1.09007 * 109.47051 * 334.71836 * 7 6 4 33 33 H 1.09000 * 109.47364 * 214.72274 * 7 6 4 34 34 H 1.09002 * 113.75665 * 108.09615 * 9 8 7 35 35 H 1.09000 * 113.75903 * 336.73679 * 9 8 7 36 36 H 0.96694 * 114.00278 * 162.48386 * 11 10 9 37 37 H 0.96996 * 120.00167 * 358.20463 * 15 14 12 38 38 H 1.08996 * 113.75836 * 23.23806 * 20 8 7 39 39 H 1.09005 * 113.81861 * 251.80777 * 20 8 7 40 40 H 1.09000 * 109.47565 * 269.96059 * 26 25 23 41 41 H 1.09005 * 109.46901 * 29.96356 * 26 25 23 42 42 H 1.08997 * 109.47310 * 149.95897 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1446 1.1964 0.0000 4 7 1.7707 2.5030 0.0056 5 1 0.8606 2.8386 0.0105 6 6 2.9079 3.2572 0.0015 7 6 2.9520 4.7636 0.0030 8 7 3.0863 5.2481 1.3833 9 6 2.8941 6.7136 1.4518 10 6 4.0907 6.7217 2.4201 11 8 3.7202 6.5873 3.7936 12 6 5.0572 7.8529 2.1805 13 1 4.8188 8.6239 1.4629 14 6 6.2457 7.9035 2.8775 15 7 7.1037 8.8728 2.6449 16 14 6.6373 6.5954 4.1523 17 1 6.1283 7.0284 5.4783 18 1 5.9874 5.3173 3.7658 19 1 8.1076 6.4006 4.2260 20 6 4.5119 5.3966 1.7594 21 7 3.9488 2.4756 0.0016 22 6 3.5343 1.1860 0.0008 23 6 4.2190 -0.1079 0.0009 24 8 5.4348 -0.1689 0.0015 25 7 3.4711 -1.2326 -0.0007 26 6 4.1325 -2.5398 0.0000 27 6 2.1292 -1.1692 -0.0017 28 8 1.4929 -2.2054 -0.0027 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.0318 5.1544 -0.4314 33 1 3.8043 5.1028 -0.5857 34 1 1.9531 7.0120 1.9140 35 1 3.0879 7.2265 0.5098 36 1 4.4482 6.3255 4.3737 37 1 6.9122 9.5372 1.9647 38 1 5.1799 5.5235 0.9075 39 1 4.8612 4.6446 2.4670 40 1 4.2976 -2.8641 -1.0274 41 1 5.0901 -2.4622 0.5150 42 1 3.5019 -3.2658 0.5132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364396826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:17 Heat of formation + Delta-G solvation = -2.215860 kcal Electronic energy + Delta-G solvation = -29233.271978 eV Core-core repulsion = 25023.181813 eV Total energy + Delta-G solvation = -4210.090164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.13836 -42.32882 -40.94564 -40.27110 -37.65713 -36.56779 -36.50843 -34.62190 -34.15092 -32.38710 -30.58767 -28.85682 -27.90283 -27.37155 -27.09523 -24.81335 -24.45951 -23.61281 -22.19952 -20.91938 -20.87928 -19.87104 -19.53689 -18.90820 -18.55116 -17.62227 -17.40999 -17.10189 -16.94059 -16.67924 -16.52308 -16.16563 -15.95087 -15.66787 -15.19098 -15.08633 -14.74071 -14.44137 -14.27818 -13.96369 -13.79191 -13.58106 -13.39572 -13.30326 -13.02794 -12.79867 -12.44208 -12.23068 -12.07069 -11.98525 -11.79762 -11.53069 -11.41904 -11.33514 -11.17093 -10.97271 -10.77863 -10.42486 -9.84596 -9.19282 -8.74569 -6.54268 0.01303 0.33145 0.42826 1.22393 1.35680 1.37805 1.46424 1.58456 1.90374 2.24188 2.38808 2.74549 2.88493 3.06891 3.16430 3.51418 3.74201 3.76900 3.86986 4.02992 4.10990 4.19984 4.21842 4.31356 4.33909 4.39221 4.53885 4.57703 4.61497 4.71157 4.71312 4.82850 4.92193 4.94589 5.08725 5.14330 5.26276 5.71492 5.72830 5.92972 6.03717 6.07870 6.25159 6.43918 6.46010 6.75025 6.85207 7.29096 8.57270 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.003075 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.760119 B = 9104.199771 C = 9936.737623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.509 5.509 3 C 0.298 3.702 4 N -0.521 5.521 5 H 0.450 0.550 6 C 0.262 3.738 7 C 0.098 3.902 8 N -0.469 5.469 9 C 0.039 3.961 10 C 0.180 3.820 11 O -0.561 6.561 12 C -0.609 4.609 13 H 0.038 0.962 14 C -0.014 4.014 15 N -0.934 5.934 16 Si 1.066 2.934 17 H -0.255 1.255 18 H -0.242 1.242 19 H -0.291 1.291 20 C -0.016 4.016 21 N -0.447 5.447 22 C -0.138 4.138 23 C 0.592 3.408 24 O -0.524 6.524 25 N -0.554 5.554 26 C 0.079 3.921 27 C 0.713 3.287 28 O -0.545 6.545 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.355 0.645 37 H 0.258 0.742 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.251 -19.647 -7.749 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.237 5.237 3 C 0.075 3.925 4 N -0.134 5.134 5 H 0.295 0.705 6 C -0.005 4.005 7 C -0.032 4.032 8 N -0.193 5.193 9 C -0.089 4.089 10 C 0.139 3.861 11 O -0.370 6.370 12 C -0.647 4.647 13 H 0.056 0.944 14 C -0.213 4.213 15 N -0.570 5.570 16 Si 0.889 3.111 17 H -0.180 1.180 18 H -0.167 1.167 19 H -0.218 1.218 20 C -0.145 4.145 21 N -0.165 5.165 22 C -0.268 4.268 23 C 0.385 3.615 24 O -0.398 6.398 25 N -0.298 5.298 26 C -0.061 4.061 27 C 0.416 3.584 28 O -0.419 6.419 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.156 0.844 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.205 0.795 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.999 -20.874 -6.545 27.704 hybrid contribution -0.653 1.327 -1.572 2.158 sum -17.651 -19.547 -8.117 27.559 Atomic orbital electron populations 1.22459 0.72247 1.06744 1.05826 1.43831 1.10046 0.99747 1.70060 1.17830 0.90846 0.82182 1.01647 1.42318 1.12099 1.01389 1.57548 0.70518 1.23304 0.78670 0.95187 1.03362 1.21260 1.05826 0.83352 0.92759 1.68457 1.16568 1.14368 1.19877 1.23912 0.99097 0.87665 0.98257 1.20649 0.93677 0.91599 0.80143 1.86407 1.39337 1.91993 1.19290 1.22602 1.04663 1.11271 1.26184 0.94364 1.27060 0.92776 1.00737 1.00771 1.70914 1.38351 1.14615 1.33111 0.83891 0.76892 0.74890 0.75429 1.18032 1.16693 1.21830 1.24963 0.90285 0.98691 1.00572 1.70122 1.30208 0.99211 1.16913 1.20251 0.89278 0.93001 1.24266 1.17139 0.86251 0.82776 0.75385 1.90851 1.13819 1.87036 1.48131 1.45998 1.05952 1.10331 1.67546 1.22170 0.99015 0.79597 1.05319 1.15302 0.81389 0.83247 0.78440 1.91022 1.65268 1.30062 1.55586 0.88515 0.87929 0.87355 0.84435 0.90255 0.88386 0.89534 0.79466 0.93309 0.91189 0.91342 0.89211 0.88898 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 10.35 127.77 1.32 1.79 16 2 N -0.51 -8.44 3.03 -677.30 -2.05 -10.49 16 3 C 0.30 6.05 7.68 132.42 1.02 7.07 16 4 N -0.52 -8.34 6.10 -182.58 -1.11 -9.45 16 5 H 0.45 2.91 8.80 -92.71 -0.82 2.10 16 6 C 0.26 6.47 7.68 137.77 1.06 7.53 16 7 C 0.10 2.32 5.42 85.56 0.46 2.78 16 8 N -0.47 -14.97 6.14 -914.75 -5.62 -20.59 16 9 C 0.04 1.33 7.34 86.41 0.63 1.97 16 10 C 0.18 8.00 1.06 -10.89 -0.01 7.99 16 11 O -0.56 -25.36 13.26 -148.98 -1.98 -27.33 16 12 C -0.61 -32.81 9.05 25.60 0.23 -32.57 16 13 H 0.04 2.21 8.04 -2.91 -0.02 2.19 16 14 C -0.01 -0.77 5.47 84.65 0.46 -0.30 16 15 N -0.93 -57.08 13.70 21.45 0.29 -56.78 16 16 Si 1.07 48.19 24.77 68.60 1.70 49.89 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.24 -9.88 4.71 99.48 0.47 -9.41 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 C -0.02 -0.64 6.21 86.37 0.54 -0.10 16 21 N -0.45 -14.74 11.30 -175.52 -1.98 -16.73 16 22 C -0.14 -4.10 7.42 40.88 0.30 -3.80 16 23 C 0.59 18.04 7.63 86.32 0.66 18.70 16 24 O -0.52 -19.45 16.75 -4.48 -0.08 -19.52 16 25 N -0.55 -12.97 2.96 -801.23 -2.37 -15.34 16 26 C 0.08 1.36 10.09 127.77 1.29 2.65 16 27 C 0.71 15.02 8.10 179.29 1.45 16.48 16 28 O -0.55 -12.24 15.16 -4.02 -0.06 -12.30 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 0.80 7.34 -2.39 -0.02 0.79 16 31 H 0.11 0.18 7.83 -2.39 -0.02 0.16 16 32 H 0.14 1.96 8.08 -2.38 -0.02 1.94 16 33 H 0.08 2.07 7.39 -2.39 -0.02 2.05 16 34 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.09 2.77 7.87 -2.39 -0.02 2.75 16 36 H 0.36 15.11 4.33 -74.06 -0.32 14.78 16 37 H 0.26 15.80 8.71 -92.71 -0.81 15.00 16 38 H 0.07 2.94 7.44 -2.39 -0.02 2.93 16 39 H 0.07 2.91 6.55 -2.38 -0.02 2.89 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.66 7.42 -2.38 -0.02 1.64 16 42 H 0.11 1.55 7.33 -2.39 -0.02 1.53 16 Total: -1.00 -81.00 347.15 -4.14 -85.14 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.30 Total: 23.34 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 9.42 Total: 30.16 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -12.84 Total: -129.38 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -2.11 Total: -59.16 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.70 Total: 49.89 kcal Total: -81.00 -4.14 -85.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364396826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.920 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds