Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35545 * 116.99301 * 2 1 4 4 C 1.39013 * 120.46474 * 180.29868 * 3 2 1 5 5 C 1.39122 * 118.28341 * 180.21538 * 4 3 2 6 6 N 1.39071 * 120.48575 * 179.76015 * 5 4 3 7 7 C 1.34769 * 120.00305 * 185.04890 * 6 5 4 8 8 O 1.21572 * 120.00002 * 354.97877 * 7 6 5 9 9 N 1.34778 * 120.00408 * 174.97677 * 7 6 5 10 10 C 1.46966 * 120.59435 * 185.21115 * 9 7 6 11 11 C 1.53375 * 108.63104 * 235.24873 * 10 9 7 12 12 N 1.46960 * 108.63600 * 310.57301 * 11 10 9 13 13 C 1.34780 * 120.59642 * 235.20133 * 12 11 10 14 14 O 1.21681 * 119.99694 * 5.24592 * 13 12 11 15 15 C 1.46370 * 119.99771 * 185.23565 * 13 12 11 16 16 H 1.08002 * 120.00711 * 354.97950 * 15 13 12 17 17 C 1.40054 * 120.00024 * 174.98614 * 15 13 12 18 18 N 1.30669 * 119.99513 * 0.02562 * 17 15 13 19 19 Si 1.86790 * 120.00276 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47530 * 269.99953 * 19 17 15 21 21 H 1.48502 * 109.47042 * 30.00173 * 19 17 15 22 22 H 1.48502 * 109.47041 * 149.99732 * 19 17 15 23 23 C 1.46972 * 118.80932 * 55.48576 * 12 11 10 24 24 C 1.46968 * 120.59220 * 5.23617 * 9 7 6 25 25 N 1.33082 * 119.02766 * 359.49131 * 5 4 3 26 26 C 1.31722 * 120.84944 * 0.27256 * 25 5 4 27 27 N 1.31781 * 121.88807 * 359.97387 * 26 25 5 28 28 H 1.08998 * 109.47177 * 60.00052 * 1 2 3 29 29 H 1.08999 * 109.46615 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47501 * 299.99721 * 1 2 3 31 31 H 1.07997 * 120.85716 * 359.97438 * 4 3 2 32 32 H 0.97008 * 119.99867 * 5.04857 * 6 5 4 33 33 H 1.08998 * 109.60794 * 115.50512 * 10 9 7 34 34 H 1.09001 * 109.61097 * 354.99279 * 10 9 7 35 35 H 1.09001 * 109.60667 * 190.83256 * 11 10 9 36 36 H 1.08999 * 109.61027 * 70.32420 * 11 10 9 37 37 H 0.97000 * 120.00134 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.61182 * 64.26218 * 23 12 11 39 39 H 1.09003 * 109.60972 * 184.77481 * 23 12 11 40 40 H 1.08998 * 109.60535 * 244.49246 * 24 9 7 41 41 H 1.08996 * 109.60686 * 4.82996 * 24 9 7 42 42 H 1.07994 * 119.05587 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 6 3.4318 1.2920 -0.0062 5 6 4.0156 2.5548 -0.0014 6 7 5.3995 2.6922 -0.0023 7 6 5.9553 3.9153 0.1052 8 8 5.2497 4.9052 0.1110 9 7 7.2934 4.0410 0.2063 10 6 7.9057 5.3567 0.4383 11 6 8.9340 5.6207 -0.6686 12 7 9.8070 4.4445 -0.7888 13 6 11.1451 4.5703 -0.6887 14 8 11.6353 5.6467 -0.4026 15 6 12.0087 3.4122 -0.9239 16 1 11.5724 2.4396 -1.0976 17 6 13.4008 3.5651 -0.9237 18 7 13.9287 4.7417 -0.7129 19 14 14.5029 2.0870 -1.2231 20 1 14.8231 1.4374 0.0732 21 1 13.8023 1.1174 -2.1030 22 1 15.7596 2.5312 -1.8780 23 6 9.1950 3.1296 -1.0264 24 6 8.1664 2.8648 0.0860 25 7 3.2304 3.6292 -0.0013 26 6 1.9189 3.5073 -0.0004 27 7 1.3292 2.3288 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 4.0408 0.4001 -0.0108 32 1 5.9648 1.9077 -0.0802 33 1 8.4027 5.3630 1.4084 34 1 7.1358 6.1279 0.4138 35 1 9.5318 6.4951 -0.4116 36 1 8.4185 5.7918 -1.6136 37 1 14.8929 4.8478 -0.7130 38 1 8.6976 3.1274 -1.9963 39 1 9.9652 2.3585 -1.0057 40 1 8.6819 2.6937 1.0310 41 1 7.5682 1.9898 -0.1680 42 1 1.3093 4.3988 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414417084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = -6.828657 kcal Electronic energy + Delta-G solvation = -28410.772628 eV Core-core repulsion = 24200.482437 eV Total energy + Delta-G solvation = -4210.290190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62307 -40.37937 -38.82185 -38.05874 -36.03225 -35.44143 -33.25523 -32.58983 -32.42251 -31.63496 -30.72400 -27.88358 -27.38347 -26.08927 -24.70244 -24.01498 -23.22719 -22.16306 -20.55921 -19.70085 -19.08395 -18.05950 -17.76061 -16.56259 -16.47930 -16.20363 -15.95395 -15.68539 -15.59060 -15.20427 -14.99702 -14.57307 -14.48625 -14.24886 -14.21558 -14.08963 -13.96406 -13.28176 -12.69657 -12.40946 -12.11304 -12.07788 -11.72448 -11.48861 -11.41479 -11.23186 -11.13857 -11.04314 -10.96129 -10.77437 -10.34264 -10.27251 -10.15001 -9.63008 -9.26960 -9.07851 -8.97324 -8.67361 -7.71322 -7.32438 -6.30279 -4.76639 0.71795 1.00318 2.06491 2.72353 3.06287 3.08361 3.13799 3.16442 3.43992 3.70578 3.83919 3.98739 4.17426 4.35888 4.45543 4.61423 4.81244 4.92548 4.95244 5.02340 5.12098 5.18189 5.23089 5.34546 5.51247 5.53729 5.60340 5.79866 5.87150 5.98081 6.11945 6.20005 6.28722 6.41264 6.48181 6.61658 6.74845 6.94079 7.33873 7.42830 7.62731 7.98200 7.99868 8.20187 8.46012 8.91017 9.28420 10.45553 10.64007 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023204 B = 0.002320 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.379239 B =12066.489511 C =13155.603591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.302 6.302 3 C 0.382 3.618 4 C -0.291 4.291 5 C 0.455 3.545 6 N -0.662 5.662 7 C 0.697 3.303 8 O -0.527 6.527 9 N -0.616 5.616 10 C 0.117 3.883 11 C 0.106 3.894 12 N -0.643 5.643 13 C 0.559 3.441 14 O -0.574 6.574 15 C -0.545 4.545 16 H 0.073 0.927 17 C 0.087 3.913 18 N -0.765 5.765 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.265 1.265 22 H -0.279 1.279 23 C 0.110 3.890 24 C 0.092 3.908 25 N -0.527 5.527 26 C 0.363 3.637 27 N -0.602 5.602 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.152 0.848 32 H 0.417 0.583 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.270 0.730 38 H 0.048 0.952 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.610 -10.823 1.405 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.197 3.803 4 C -0.319 4.319 5 C 0.215 3.785 6 N -0.312 5.312 7 C 0.398 3.602 8 O -0.398 6.398 9 N -0.354 5.354 10 C -0.006 4.006 11 C -0.019 4.019 12 N -0.381 5.381 13 C 0.365 3.635 14 O -0.456 6.456 15 C -0.582 4.582 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.394 5.394 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.189 1.189 22 H -0.204 1.204 23 C -0.016 4.016 24 C -0.033 4.033 25 N -0.251 5.251 26 C 0.074 3.926 27 N -0.335 5.335 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.170 0.830 32 H 0.257 0.743 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -21.945 -8.821 1.607 23.706 hybrid contribution 1.067 -2.015 -0.239 2.293 sum -20.878 -10.836 1.368 23.562 Atomic orbital electron populations 1.22945 0.76514 1.03261 1.02879 1.86222 1.23462 1.24050 1.86924 1.19600 0.88628 0.85005 0.87096 1.20973 0.93506 0.98344 1.19054 1.18017 0.84569 0.88516 0.87385 1.42966 1.03607 1.10463 1.74181 1.15872 0.82557 0.82963 0.78845 1.91034 1.59872 1.35039 1.53819 1.47383 1.03001 1.10180 1.74818 1.22055 0.96195 0.82940 0.99422 1.21553 0.91658 0.92230 0.96437 1.48187 1.06672 1.04939 1.78343 1.18290 0.78546 0.89872 0.76779 1.90603 1.72506 1.29854 1.52665 1.20931 0.90538 0.94308 1.52379 0.90906 1.25734 0.98580 0.96270 0.92722 1.70000 1.12036 1.22853 1.34464 0.86374 0.79593 0.81785 0.79051 1.19682 1.18870 1.20422 1.21869 0.95619 0.89002 0.95071 1.22346 0.92896 0.86370 1.01642 1.68558 1.05681 1.30998 1.19893 1.24696 0.87512 0.93702 0.86663 1.68135 1.41621 0.99150 1.24631 0.91924 0.88323 0.91929 0.83033 0.74308 0.91130 0.88588 0.88370 0.93350 0.91941 0.93360 0.87470 0.90271 0.91078 0.78078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.41 101.05 1.05 1.30 16 2 O -0.30 -2.82 10.49 -18.33 -0.19 -3.02 16 3 C 0.38 4.08 7.52 -16.78 -0.13 3.96 16 4 C -0.29 -2.96 9.99 -38.97 -0.39 -3.35 16 5 C 0.45 5.62 7.45 -154.37 -1.15 4.47 16 6 N -0.66 -7.74 5.30 -15.72 -0.08 -7.82 16 7 C 0.70 10.52 8.26 -86.92 -0.72 9.80 16 8 O -0.53 -9.71 14.06 5.30 0.07 -9.63 16 9 N -0.62 -9.02 2.95 -177.95 -0.52 -9.54 16 10 C 0.12 1.89 6.60 -3.59 -0.02 1.87 16 11 C 0.11 2.00 6.60 -3.60 -0.02 1.98 16 12 N -0.64 -13.54 2.94 -173.87 -0.51 -14.05 16 13 C 0.56 14.97 7.62 -12.99 -0.10 14.87 16 14 O -0.57 -17.78 14.45 5.21 0.08 -17.71 16 15 C -0.55 -14.24 8.86 -35.63 -0.32 -14.56 16 16 H 0.07 1.69 5.66 -52.49 -0.30 1.39 16 17 C 0.09 2.30 5.50 -17.37 -0.10 2.21 16 18 N -0.77 -22.01 11.84 55.55 0.66 -21.36 16 19 Si 0.91 18.98 29.56 -169.99 -5.02 13.95 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 C 0.11 1.78 6.51 -3.36 -0.02 1.75 16 24 C 0.09 1.16 6.58 -3.37 -0.02 1.14 16 25 N -0.53 -7.34 8.04 -13.80 -0.11 -7.45 16 26 C 0.36 4.04 12.28 -92.23 -1.13 2.91 16 27 N -0.60 -6.55 9.38 -14.71 -0.14 -6.68 16 28 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.42 3.46 6.19 -40.82 -0.25 3.21 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.52 6.99 -51.93 -0.36 1.16 16 35 H 0.10 2.05 6.99 -51.93 -0.36 1.68 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.76 5.34 -51.93 -0.28 1.48 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.61 5.61 -51.93 -0.29 0.32 16 42 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -36.98 352.62 -8.31 -45.29 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.78 Total: 4.36 kcal Atomic # 6 Polarization: 31.40 SS G_CDS: -3.07 Total: 28.34 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -0.71 Total: -66.91 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.04 Total: -30.36 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.98 -8.31 -45.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414417084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.465 kcal (2) G-P(sol) polarization free energy of solvation -36.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds