Wall clock time and date at job start Tue Mar 31 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35545 * 116.99301 * 2 1 4 4 C 1.39013 * 120.46474 * 180.29868 * 3 2 1 5 5 C 1.39122 * 118.28341 * 180.21538 * 4 3 2 6 6 N 1.39071 * 120.48575 * 179.76015 * 5 4 3 7 7 C 1.34769 * 120.00305 * 185.04890 * 6 5 4 8 8 O 1.21572 * 120.00002 * 354.97877 * 7 6 5 9 9 N 1.34778 * 120.00408 * 174.97677 * 7 6 5 10 10 C 1.46966 * 120.59435 * 185.21115 * 9 7 6 11 11 C 1.53375 * 108.63104 * 235.24873 * 10 9 7 12 12 N 1.46960 * 108.63600 * 310.57301 * 11 10 9 13 13 C 1.34780 * 120.59642 * 235.20133 * 12 11 10 14 14 O 1.21681 * 119.99694 * 5.24592 * 13 12 11 15 15 C 1.46370 * 119.99771 * 185.23565 * 13 12 11 16 16 H 1.08002 * 120.00711 * 354.97950 * 15 13 12 17 17 C 1.40054 * 120.00024 * 174.98614 * 15 13 12 18 18 N 1.30669 * 119.99513 * 0.02562 * 17 15 13 19 19 Si 1.86790 * 120.00276 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47530 * 269.99953 * 19 17 15 21 21 H 1.48502 * 109.47042 * 30.00173 * 19 17 15 22 22 H 1.48502 * 109.47041 * 149.99732 * 19 17 15 23 23 C 1.46972 * 118.80932 * 55.48576 * 12 11 10 24 24 C 1.46968 * 120.59220 * 5.23617 * 9 7 6 25 25 N 1.33082 * 119.02766 * 359.49131 * 5 4 3 26 26 C 1.31722 * 120.84944 * 0.27256 * 25 5 4 27 27 N 1.31781 * 121.88807 * 359.97387 * 26 25 5 28 28 H 1.08998 * 109.47177 * 60.00052 * 1 2 3 29 29 H 1.08999 * 109.46615 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47501 * 299.99721 * 1 2 3 31 31 H 1.07997 * 120.85716 * 359.97438 * 4 3 2 32 32 H 0.97008 * 119.99867 * 5.04857 * 6 5 4 33 33 H 1.08998 * 109.60794 * 115.50512 * 10 9 7 34 34 H 1.09001 * 109.61097 * 354.99279 * 10 9 7 35 35 H 1.09001 * 109.60667 * 190.83256 * 11 10 9 36 36 H 1.08999 * 109.61027 * 70.32420 * 11 10 9 37 37 H 0.97000 * 120.00134 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.61182 * 64.26218 * 23 12 11 39 39 H 1.09003 * 109.60972 * 184.77481 * 23 12 11 40 40 H 1.08998 * 109.60535 * 244.49246 * 24 9 7 41 41 H 1.08996 * 109.60686 * 4.82996 * 24 9 7 42 42 H 1.07994 * 119.05587 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 6 3.4318 1.2920 -0.0062 5 6 4.0156 2.5548 -0.0014 6 7 5.3995 2.6922 -0.0023 7 6 5.9553 3.9153 0.1052 8 8 5.2497 4.9052 0.1110 9 7 7.2934 4.0410 0.2063 10 6 7.9057 5.3567 0.4383 11 6 8.9340 5.6207 -0.6686 12 7 9.8070 4.4445 -0.7888 13 6 11.1451 4.5703 -0.6887 14 8 11.6353 5.6467 -0.4026 15 6 12.0087 3.4122 -0.9239 16 1 11.5724 2.4396 -1.0976 17 6 13.4008 3.5651 -0.9237 18 7 13.9287 4.7417 -0.7129 19 14 14.5029 2.0870 -1.2231 20 1 14.8231 1.4374 0.0732 21 1 13.8023 1.1174 -2.1030 22 1 15.7596 2.5312 -1.8780 23 6 9.1950 3.1296 -1.0264 24 6 8.1664 2.8648 0.0860 25 7 3.2304 3.6292 -0.0013 26 6 1.9189 3.5073 -0.0004 27 7 1.3292 2.3288 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 4.0408 0.4001 -0.0108 32 1 5.9648 1.9077 -0.0802 33 1 8.4027 5.3630 1.4084 34 1 7.1358 6.1279 0.4138 35 1 9.5318 6.4951 -0.4116 36 1 8.4185 5.7918 -1.6136 37 1 14.8929 4.8478 -0.7130 38 1 8.6976 3.1274 -1.9963 39 1 9.9652 2.3585 -1.0057 40 1 8.6819 2.6937 1.0310 41 1 7.5682 1.9898 -0.1680 42 1 1.3093 4.3988 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414417084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:07 Heat of formation + Delta-G solvation = -34.422546 kcal Electronic energy + Delta-G solvation = -28411.969189 eV Core-core repulsion = 24200.482437 eV Total energy + Delta-G solvation = -4211.486751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.51273 -41.46116 -39.95265 -39.32040 -37.60665 -36.51557 -34.85716 -34.48195 -33.38430 -32.70372 -31.87187 -29.15239 -28.41227 -27.70259 -25.52741 -25.15339 -24.46113 -23.48173 -21.90041 -20.88170 -20.20937 -19.37014 -18.64318 -18.10323 -17.59955 -17.30448 -17.23449 -16.81442 -16.50431 -16.41089 -16.05790 -15.92046 -15.82216 -15.65162 -15.34052 -15.18856 -14.97279 -14.55505 -14.37416 -13.64255 -13.46895 -13.13578 -12.90034 -12.85000 -12.84311 -12.71470 -12.43503 -12.27789 -12.27046 -12.00222 -11.94919 -11.76756 -11.42026 -10.91334 -10.49433 -10.21764 -10.12485 -9.83520 -9.76619 -8.99172 -8.27059 -6.81717 -0.10743 0.15760 1.07606 1.44245 1.44892 1.60051 1.94887 1.98664 2.25402 2.44546 2.48591 2.82191 2.84438 3.10440 3.31473 3.60985 3.84522 3.90695 3.95180 4.07342 4.13515 4.26978 4.39279 4.45148 4.46194 4.47012 4.52603 4.67961 4.73059 4.75974 4.87027 4.88085 5.06059 5.21717 5.37896 5.42838 5.50857 5.73146 5.89227 6.12366 6.13581 6.35197 6.61007 6.90427 7.11907 7.36847 7.41621 8.47652 8.69048 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023204 B = 0.002320 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.379239 B =12066.489511 C =13155.603591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.306 6.306 3 C 0.372 3.628 4 C -0.278 4.278 5 C 0.436 3.564 6 N -0.647 5.647 7 C 0.700 3.300 8 O -0.564 6.564 9 N -0.616 5.616 10 C 0.132 3.868 11 C 0.109 3.891 12 N -0.645 5.645 13 C 0.541 3.459 14 O -0.632 6.632 15 C -0.564 4.564 16 H 0.102 0.898 17 C 0.027 3.973 18 N -0.824 5.824 19 Si 0.995 3.005 20 H -0.262 1.262 21 H -0.243 1.243 22 H -0.281 1.281 23 C 0.104 3.896 24 C 0.099 3.901 25 N -0.565 5.565 26 C 0.359 3.641 27 N -0.603 5.603 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.182 0.818 32 H 0.433 0.567 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.273 0.727 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.061 -14.727 1.090 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.186 3.814 4 C -0.305 4.305 5 C 0.197 3.803 6 N -0.299 5.299 7 C 0.401 3.599 8 O -0.437 6.437 9 N -0.353 5.353 10 C 0.008 3.992 11 C -0.016 4.016 12 N -0.382 5.382 13 C 0.348 3.652 14 O -0.519 6.519 15 C -0.600 4.600 16 H 0.120 0.880 17 C -0.188 4.188 18 N -0.454 5.454 19 Si 0.815 3.185 20 H -0.187 1.187 21 H -0.165 1.165 22 H -0.206 1.206 23 C -0.020 4.020 24 C -0.025 4.025 25 N -0.290 5.290 26 C 0.070 3.930 27 N -0.336 5.336 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.079 0.921 31 H 0.199 0.801 32 H 0.276 0.724 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -23.484 -12.819 1.282 26.786 hybrid contribution 1.329 -0.816 -0.163 1.568 sum -22.156 -13.635 1.119 26.039 Atomic orbital electron populations 1.23190 0.74964 1.05159 1.02743 1.86226 1.24987 1.23229 1.86620 1.19876 0.89165 0.85385 0.86960 1.21162 0.93612 0.98406 1.17301 1.18212 0.84544 0.89116 0.88398 1.42654 1.03740 1.09771 1.73772 1.15931 0.82196 0.83514 0.78278 1.91014 1.60656 1.36704 1.55368 1.47318 1.03276 1.09961 1.74760 1.21729 0.95312 0.84348 0.97857 1.21537 0.91512 0.90733 0.97768 1.48030 1.05532 1.07463 1.77174 1.18729 0.80549 0.89479 0.76444 1.90556 1.74455 1.31767 1.55130 1.21498 0.91147 0.95348 1.51990 0.87978 1.27015 1.00476 0.99684 0.91624 1.70197 1.12603 1.26179 1.36372 0.85045 0.76754 0.77252 0.79457 1.18685 1.16548 1.20606 1.22130 0.96367 0.86291 0.97205 1.22403 0.92486 0.87174 1.00397 1.68504 1.06952 1.32466 1.21082 1.25128 0.87062 0.94597 0.86209 1.68190 1.41715 0.99283 1.24406 0.92050 0.85481 0.92055 0.80110 0.72363 0.91547 0.88376 0.91331 0.92709 0.91749 0.91947 0.87406 0.90140 0.86037 0.75926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.41 113.37 1.18 1.52 16 2 O -0.31 -4.92 10.49 -88.50 -0.93 -5.85 16 3 C 0.37 7.09 7.52 84.71 0.64 7.73 16 4 C -0.28 -4.84 9.99 22.67 0.23 -4.61 16 5 C 0.44 9.84 7.45 132.83 0.99 10.83 16 6 N -0.65 -13.34 5.30 -321.91 -1.70 -15.05 16 7 C 0.70 19.91 8.26 179.06 1.48 21.39 16 8 O -0.56 -20.46 14.06 -3.94 -0.06 -20.51 16 9 N -0.62 -16.98 2.95 -835.17 -2.46 -19.45 16 10 C 0.13 4.27 6.60 86.42 0.57 4.84 16 11 C 0.11 4.24 6.60 86.42 0.57 4.81 16 12 N -0.65 -27.37 2.94 -822.24 -2.42 -29.78 16 13 C 0.54 29.82 7.62 86.36 0.66 30.48 16 14 O -0.63 -41.26 14.45 -4.29 -0.06 -41.32 16 15 C -0.56 -29.44 8.86 24.83 0.22 -29.22 16 16 H 0.10 4.53 5.66 -2.91 -0.02 4.52 16 17 C 0.03 1.43 5.50 85.31 0.47 1.90 16 18 N -0.82 -49.02 11.84 21.84 0.26 -48.76 16 19 Si 1.00 38.38 29.56 68.60 2.03 40.41 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 21 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 22 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 23 C 0.10 3.14 6.51 86.56 0.56 3.70 16 24 C 0.10 2.21 6.58 86.56 0.57 2.78 16 25 N -0.57 -15.13 8.04 -197.57 -1.59 -16.71 16 26 C 0.36 7.57 12.28 180.91 2.22 9.80 16 27 N -0.60 -12.12 9.38 -313.03 -2.94 -15.06 16 28 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 29 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.43 5.39 6.19 -92.70 -0.57 4.81 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.10 3.16 6.99 -2.39 -0.02 3.14 16 35 H 0.07 3.06 6.99 -2.39 -0.02 3.05 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.27 14.79 8.29 -92.71 -0.77 14.02 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.11 3.25 5.34 -2.39 -0.01 3.24 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.12 1.50 5.61 -2.39 -0.01 1.48 16 42 H 0.22 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -84.89 352.62 1.00 -83.88 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.52 Total: 22.26 kcal Atomic # 6 Polarization: 55.60 SS G_CDS: 10.35 Total: 65.95 kcal Atomic # 7 Polarization: -133.96 SS G_CDS: -10.85 Total: -144.81 kcal Atomic # 8 Polarization: -66.65 SS G_CDS: -1.05 Total: -67.69 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -84.89 1.00 -83.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414417084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.461 kcal (2) G-P(sol) polarization free energy of solvation -84.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds