Wall clock time and date at job start Tue Mar 31 2020 18:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35771 * 116.99567 * 2 1 4 4 N 1.32157 * 120.19212 * 0.26282 * 3 2 1 5 5 N 1.28305 * 122.18709 * 180.27093 * 4 3 2 6 6 C 1.31902 * 122.43766 * 359.72489 * 5 4 3 7 7 C 1.38532 * 120.03865 * 359.97438 * 6 5 4 8 8 C 1.39326 * 117.93557 * 359.97438 * 7 6 5 9 9 N 1.39772 * 121.10876 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00111 * 335.80304 * 9 8 7 11 11 O 1.21586 * 119.99581 * 354.16569 * 10 9 8 12 12 N 1.34771 * 120.00197 * 174.16719 * 10 9 8 13 13 C 1.46971 * 120.59372 * 5.07853 * 12 10 9 14 14 C 1.53368 * 108.63261 * 235.20752 * 13 12 10 15 15 N 1.46962 * 108.63290 * 310.57059 * 14 13 12 16 16 C 1.34780 * 120.59569 * 235.20240 * 15 14 13 17 17 O 1.21687 * 120.00031 * 5.31692 * 16 15 14 18 18 C 1.46371 * 120.00097 * 185.31242 * 16 15 14 19 19 H 1.07995 * 120.00093 * 354.97113 * 18 16 15 20 20 C 1.40046 * 120.00080 * 174.97742 * 18 16 15 21 21 N 1.30676 * 119.99968 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00371 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47283 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.46779 * 300.00343 * 22 20 18 25 25 H 1.48499 * 109.46842 * 59.99903 * 22 20 18 26 26 C 1.46961 * 118.81283 * 55.48288 * 15 14 13 27 27 C 1.46962 * 120.59595 * 185.05312 * 12 10 9 28 28 H 1.09001 * 109.47087 * 60.00169 * 1 2 3 29 29 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47908 * 299.99813 * 1 2 3 31 31 H 1.08004 * 119.97915 * 179.97438 * 6 5 4 32 32 H 1.08002 * 121.02828 * 180.02562 * 7 6 5 33 33 H 0.96995 * 119.99762 * 155.80636 * 9 8 7 34 34 H 1.08999 * 109.61202 * 115.45594 * 13 12 10 35 35 H 1.09000 * 109.60778 * 354.94846 * 13 12 10 36 36 H 1.09004 * 109.60622 * 190.83208 * 14 13 12 37 37 H 1.08998 * 109.61172 * 70.31991 * 14 13 12 38 38 H 0.97001 * 120.00233 * 179.97438 * 21 20 18 39 39 H 1.09006 * 109.61234 * 64.26387 * 26 15 14 40 40 H 1.09000 * 109.61394 * 184.77578 * 26 15 14 41 41 H 1.08998 * 109.61398 * 244.54026 * 27 12 10 42 42 H 1.09002 * 109.60991 * 4.88040 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3291 2.3205 0.0052 5 7 1.8714 3.4833 0.0003 6 6 3.1793 3.6541 -0.0050 7 6 4.0222 2.5547 -0.0048 8 6 3.4425 1.2878 0.0016 9 7 4.2302 0.1332 0.0016 10 6 5.4873 0.1750 -0.4824 11 8 5.9001 1.1869 -1.0154 12 7 6.2868 -0.9047 -0.3757 13 6 5.7680 -2.1691 0.1647 14 6 6.6537 -2.5994 1.3406 15 7 8.0597 -2.5337 0.9181 16 6 8.8593 -3.6134 1.0249 17 8 8.3963 -4.6804 1.3828 18 6 10.2845 -3.5027 0.7103 19 1 10.6801 -2.5787 0.3154 20 6 11.1351 -4.5950 0.9215 21 7 10.6564 -5.7133 1.3988 22 14 12.9539 -4.4540 0.5194 23 1 13.6306 -5.7389 0.8300 24 1 13.1192 -4.1441 -0.9235 25 1 13.5575 -3.3671 1.3314 26 6 8.5800 -1.2678 0.3829 27 6 7.6929 -0.8389 -0.7982 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 3.5933 4.6516 -0.0094 32 1 5.0954 2.6760 -0.0087 33 1 3.8721 -0.6982 0.3500 34 1 5.7912 -2.9352 -0.6104 35 1 4.7444 -2.0263 0.5108 36 1 6.4061 -3.6207 1.6303 37 1 6.4933 -1.9281 2.1842 38 1 11.2454 -6.4700 1.5447 39 1 8.5537 -0.5037 1.1599 40 1 9.6050 -1.4092 0.0400 41 1 7.8532 -1.5103 -1.6418 42 1 7.9396 0.1817 -1.0909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425823671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:59 Heat of formation + Delta-G solvation = -7.101024 kcal Electronic energy + Delta-G solvation = -28859.372790 eV Core-core repulsion = 24649.070789 eV Total energy + Delta-G solvation = -4210.302001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78054 -40.46630 -38.69552 -38.33308 -36.22886 -35.59993 -33.40469 -32.66842 -32.28323 -31.30041 -30.76748 -27.90518 -27.55159 -26.14657 -24.69680 -24.10346 -23.34435 -22.27810 -20.49612 -19.75228 -18.85574 -18.75517 -17.67266 -17.38246 -16.63795 -16.44341 -15.95265 -15.64522 -15.40931 -14.87793 -14.71590 -14.67016 -14.47587 -14.36940 -14.22667 -14.12758 -13.94435 -13.42797 -12.67257 -12.37273 -12.17830 -12.00097 -11.80322 -11.64614 -11.61346 -11.37126 -11.26458 -11.10171 -11.04423 -10.85313 -10.55189 -10.35193 -10.19325 -9.94645 -9.67856 -9.05031 -8.92383 -8.57842 -7.76218 -7.39435 -6.32927 -4.79079 0.53470 0.76122 2.18655 2.52319 2.82961 3.07875 3.13779 3.14787 3.39590 3.43559 3.87619 3.96638 4.11926 4.31932 4.41931 4.54940 4.72451 4.96251 4.97817 4.98904 5.13854 5.21478 5.23954 5.28441 5.41773 5.42362 5.48753 5.68059 5.79954 5.85989 5.92797 6.09695 6.17098 6.19573 6.34523 6.41873 6.66337 6.69068 7.32495 7.37405 7.53510 7.94883 8.16448 8.19037 8.45337 8.88970 9.23083 10.41592 10.60481 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.002501 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.570318 B =11191.393829 C =12030.757579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.306 6.306 3 C 0.236 3.764 4 N -0.283 5.283 5 N -0.234 5.234 6 C 0.037 3.963 7 C -0.113 4.113 8 C 0.168 3.832 9 N -0.670 5.670 10 C 0.707 3.293 11 O -0.576 6.576 12 N -0.610 5.610 13 C 0.094 3.906 14 C 0.107 3.893 15 N -0.643 5.643 16 C 0.559 3.441 17 O -0.575 6.575 18 C -0.544 4.544 19 H 0.074 0.926 20 C 0.088 3.912 21 N -0.766 5.766 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.267 1.267 25 H -0.267 1.267 26 C 0.109 3.891 27 C 0.111 3.889 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.417 0.583 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.270 0.730 39 H 0.049 0.951 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.776 12.655 -2.539 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C 0.046 3.954 4 N -0.139 5.139 5 N -0.078 5.078 6 C -0.129 4.129 7 C -0.145 4.145 8 C 0.058 3.942 9 N -0.319 5.319 10 C 0.410 3.590 11 O -0.454 6.454 12 N -0.345 5.345 13 C -0.030 4.030 14 C -0.018 4.018 15 N -0.382 5.382 16 C 0.365 3.635 17 O -0.458 6.458 18 C -0.581 4.581 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.395 5.395 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.191 1.191 25 H -0.192 1.192 26 C -0.016 4.016 27 C -0.012 4.012 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.195 0.805 32 H 0.195 0.805 33 H 0.257 0.743 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.018 12.814 -2.646 19.918 hybrid contribution 1.829 -0.934 -0.037 2.054 sum -13.188 11.880 -2.683 17.952 Atomic orbital electron populations 1.22990 0.76217 1.03589 1.02877 1.86184 1.23656 1.23117 1.88115 1.21288 0.88659 0.88045 0.97364 1.72928 1.31320 0.93828 1.15813 1.72615 1.11889 1.13037 1.10293 1.24134 0.90391 1.00726 0.97647 1.22639 1.04412 0.89440 0.97958 1.17802 0.87143 0.88461 1.00772 1.42678 1.13399 1.11628 1.64218 1.15766 0.80034 0.84160 0.79072 1.90864 1.74165 1.31335 1.49031 1.47345 1.11651 1.10186 1.65353 1.22256 0.96872 0.85496 0.98345 1.21478 0.83875 1.02707 0.93758 1.48202 1.08867 1.12118 1.68964 1.18291 0.86568 0.81123 0.77478 1.90599 1.75760 1.27097 1.52334 1.20913 0.91240 0.99623 1.46283 0.90849 1.25728 1.00185 0.94486 0.92835 1.69989 1.36104 1.01864 1.31496 0.86427 0.82434 0.78241 0.79693 1.20505 1.19145 1.19175 1.21948 0.98826 0.86815 0.94023 1.22257 0.77721 1.03204 0.98019 0.91903 0.88027 0.91848 0.80454 0.80474 0.74311 0.90198 0.90869 0.88260 0.93397 0.91872 0.93298 0.87355 0.90792 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.40 101.05 1.05 1.33 16 2 O -0.31 -3.18 10.02 -19.02 -0.19 -3.37 16 3 C 0.24 2.82 7.60 -16.78 -0.13 2.69 16 4 N -0.28 -3.59 10.40 30.62 0.32 -3.27 16 5 N -0.23 -2.90 11.49 30.53 0.35 -2.55 16 6 C 0.04 0.38 11.30 -17.41 -0.20 0.18 16 7 C -0.11 -1.28 8.87 -39.07 -0.35 -1.63 16 8 C 0.17 2.03 6.51 -83.20 -0.54 1.49 16 9 N -0.67 -7.87 5.22 -13.90 -0.07 -7.94 16 10 C 0.71 9.82 8.13 -86.92 -0.71 9.11 16 11 O -0.58 -9.11 13.01 5.29 0.07 -9.04 16 12 N -0.61 -8.48 2.95 -177.94 -0.52 -9.00 16 13 C 0.09 1.25 6.59 -3.59 -0.02 1.22 16 14 C 0.11 1.81 6.60 -3.60 -0.02 1.78 16 15 N -0.64 -13.14 2.94 -173.88 -0.51 -13.65 16 16 C 0.56 14.70 7.62 -12.99 -0.10 14.61 16 17 O -0.58 -17.38 14.45 5.20 0.08 -17.30 16 18 C -0.54 -14.21 8.86 -35.63 -0.32 -14.52 16 19 H 0.07 1.72 5.66 -52.49 -0.30 1.42 16 20 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 21 N -0.77 -21.86 11.84 55.55 0.66 -21.20 16 22 Si 0.91 19.04 29.56 -169.99 -5.02 14.01 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 C 0.11 1.83 6.51 -3.37 -0.02 1.81 16 27 C 0.11 1.62 6.60 -3.37 -0.02 1.59 16 28 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 31 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.18 2.07 5.95 -52.49 -0.31 1.76 16 33 H 0.42 4.18 5.89 -40.82 -0.24 3.94 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.72 5.55 -51.93 -0.29 0.44 16 36 H 0.10 1.86 6.99 -51.93 -0.36 1.50 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.11 1.87 5.34 -51.93 -0.28 1.60 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.10 1.33 7.02 -51.93 -0.36 0.97 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -34.68 349.96 -5.70 -40.38 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.66 Total: 5.77 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: -1.47 Total: 21.89 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.22 Total: -57.62 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.05 Total: -29.71 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.68 -5.70 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425823671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.283 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds