Wall clock time and date at job start Tue Mar 31 2020 18:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35771 * 116.99567 * 2 1 4 4 N 1.32157 * 120.19212 * 0.26282 * 3 2 1 5 5 N 1.28305 * 122.18709 * 180.27093 * 4 3 2 6 6 C 1.31902 * 122.43766 * 359.72489 * 5 4 3 7 7 C 1.38532 * 120.03865 * 359.97438 * 6 5 4 8 8 C 1.39326 * 117.93557 * 359.97438 * 7 6 5 9 9 N 1.39772 * 121.10876 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00111 * 335.80304 * 9 8 7 11 11 O 1.21586 * 119.99581 * 354.16569 * 10 9 8 12 12 N 1.34771 * 120.00197 * 174.16719 * 10 9 8 13 13 C 1.46971 * 120.59372 * 5.07853 * 12 10 9 14 14 C 1.53368 * 108.63261 * 235.20752 * 13 12 10 15 15 N 1.46962 * 108.63290 * 310.57059 * 14 13 12 16 16 C 1.34780 * 120.59569 * 235.20240 * 15 14 13 17 17 O 1.21687 * 120.00031 * 5.31692 * 16 15 14 18 18 C 1.46371 * 120.00097 * 185.31242 * 16 15 14 19 19 H 1.07995 * 120.00093 * 354.97113 * 18 16 15 20 20 C 1.40046 * 120.00080 * 174.97742 * 18 16 15 21 21 N 1.30676 * 119.99968 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00371 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47283 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.46779 * 300.00343 * 22 20 18 25 25 H 1.48499 * 109.46842 * 59.99903 * 22 20 18 26 26 C 1.46961 * 118.81283 * 55.48288 * 15 14 13 27 27 C 1.46962 * 120.59595 * 185.05312 * 12 10 9 28 28 H 1.09001 * 109.47087 * 60.00169 * 1 2 3 29 29 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47908 * 299.99813 * 1 2 3 31 31 H 1.08004 * 119.97915 * 179.97438 * 6 5 4 32 32 H 1.08002 * 121.02828 * 180.02562 * 7 6 5 33 33 H 0.96995 * 119.99762 * 155.80636 * 9 8 7 34 34 H 1.08999 * 109.61202 * 115.45594 * 13 12 10 35 35 H 1.09000 * 109.60778 * 354.94846 * 13 12 10 36 36 H 1.09004 * 109.60622 * 190.83208 * 14 13 12 37 37 H 1.08998 * 109.61172 * 70.31991 * 14 13 12 38 38 H 0.97001 * 120.00233 * 179.97438 * 21 20 18 39 39 H 1.09006 * 109.61234 * 64.26387 * 26 15 14 40 40 H 1.09000 * 109.61394 * 184.77578 * 26 15 14 41 41 H 1.08998 * 109.61398 * 244.54026 * 27 12 10 42 42 H 1.09002 * 109.60991 * 4.88040 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3291 2.3205 0.0052 5 7 1.8714 3.4833 0.0003 6 6 3.1793 3.6541 -0.0050 7 6 4.0222 2.5547 -0.0048 8 6 3.4425 1.2878 0.0016 9 7 4.2302 0.1332 0.0016 10 6 5.4873 0.1750 -0.4824 11 8 5.9001 1.1869 -1.0154 12 7 6.2868 -0.9047 -0.3757 13 6 5.7680 -2.1691 0.1647 14 6 6.6537 -2.5994 1.3406 15 7 8.0597 -2.5337 0.9181 16 6 8.8593 -3.6134 1.0249 17 8 8.3963 -4.6804 1.3828 18 6 10.2845 -3.5027 0.7103 19 1 10.6801 -2.5787 0.3154 20 6 11.1351 -4.5950 0.9215 21 7 10.6564 -5.7133 1.3988 22 14 12.9539 -4.4540 0.5194 23 1 13.6306 -5.7389 0.8300 24 1 13.1192 -4.1441 -0.9235 25 1 13.5575 -3.3671 1.3314 26 6 8.5800 -1.2678 0.3829 27 6 7.6929 -0.8389 -0.7982 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 3.5933 4.6516 -0.0094 32 1 5.0954 2.6760 -0.0087 33 1 3.8721 -0.6982 0.3500 34 1 5.7912 -2.9352 -0.6104 35 1 4.7444 -2.0263 0.5108 36 1 6.4061 -3.6207 1.6303 37 1 6.4933 -1.9281 2.1842 38 1 11.2454 -6.4700 1.5447 39 1 8.5537 -0.5037 1.1599 40 1 9.6050 -1.4092 0.0400 41 1 7.8532 -1.5103 -1.6418 42 1 7.9396 0.1817 -1.0909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425823671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:58 Heat of formation + Delta-G solvation = -34.450970 kcal Electronic energy + Delta-G solvation = -28860.558773 eV Core-core repulsion = 24649.070789 eV Total energy + Delta-G solvation = -4211.487984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.70146 -41.53706 -39.90520 -39.45964 -37.77689 -36.66516 -34.93486 -34.59060 -33.20519 -32.49847 -31.84541 -29.12824 -28.57397 -27.82041 -25.69989 -24.94705 -24.67445 -23.59496 -21.87766 -20.93572 -20.08260 -19.62320 -18.73938 -18.51059 -18.03133 -17.65699 -17.36636 -16.77064 -16.62502 -16.28029 -15.94313 -15.77191 -15.66683 -15.49271 -15.39690 -15.24333 -14.88631 -14.65846 -14.38482 -13.62600 -13.54968 -13.17597 -12.98603 -12.88932 -12.82351 -12.70017 -12.47116 -12.44535 -12.26333 -12.16637 -12.04285 -12.00664 -11.60650 -10.91166 -10.83690 -10.58658 -10.21677 -9.79885 -9.56157 -9.00847 -8.28923 -6.83179 -0.37469 -0.07400 1.14209 1.42728 1.44564 1.56080 1.75322 1.77287 2.23604 2.38670 2.46540 2.51894 2.80018 3.04018 3.31406 3.59023 3.67296 3.85378 3.91549 3.94905 4.07667 4.22976 4.31068 4.40706 4.41785 4.43412 4.49413 4.62981 4.67943 4.74694 4.75518 4.86499 5.00808 5.04460 5.20177 5.24403 5.40354 5.57952 5.73377 5.90132 6.11771 6.33826 6.50502 6.89318 7.11103 7.37412 7.58702 8.45611 8.66773 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.002501 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.570318 B =11191.393829 C =12030.757579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.311 6.311 3 C 0.235 3.765 4 N -0.299 5.299 5 N -0.255 5.255 6 C 0.047 3.953 7 C -0.113 4.113 8 C 0.153 3.847 9 N -0.659 5.659 10 C 0.711 3.289 11 O -0.594 6.594 12 N -0.611 5.611 13 C 0.107 3.893 14 C 0.105 3.895 15 N -0.645 5.645 16 C 0.544 3.456 17 O -0.628 6.628 18 C -0.568 4.568 19 H 0.096 0.904 20 C 0.031 3.969 21 N -0.822 5.822 22 Si 0.991 3.009 23 H -0.279 1.279 24 H -0.254 1.254 25 H -0.254 1.254 26 C 0.110 3.890 27 C 0.121 3.879 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.063 0.937 31 H 0.213 0.787 32 H 0.177 0.823 33 H 0.424 0.576 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.274 0.726 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 14.602 -3.208 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.216 6.216 3 C 0.045 3.955 4 N -0.154 5.154 5 N -0.098 5.098 6 C -0.120 4.120 7 C -0.144 4.144 8 C 0.043 3.957 9 N -0.310 5.310 10 C 0.414 3.586 11 O -0.473 6.473 12 N -0.346 5.346 13 C -0.017 4.017 14 C -0.020 4.020 15 N -0.382 5.382 16 C 0.350 3.650 17 O -0.515 6.515 18 C -0.604 4.604 19 H 0.114 0.886 20 C -0.184 4.184 21 N -0.451 5.451 22 Si 0.811 3.189 23 H -0.204 1.204 24 H -0.177 1.177 25 H -0.178 1.178 26 C -0.014 4.014 27 C -0.002 4.002 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.230 0.770 32 H 0.194 0.806 33 H 0.266 0.734 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.992 14.823 -3.321 21.343 hybrid contribution 1.673 -1.451 0.196 2.223 sum -13.319 13.373 -3.126 19.131 Atomic orbital electron populations 1.23230 0.74736 1.05414 1.02771 1.86185 1.25127 1.22379 1.87874 1.21349 0.88700 0.88397 0.97031 1.72880 1.31880 0.94154 1.16526 1.72578 1.13007 1.13132 1.11064 1.24621 0.89465 1.02004 0.95874 1.22733 1.04455 0.89628 0.97633 1.17969 0.87390 0.88748 1.01575 1.42489 1.12617 1.12040 1.63805 1.15747 0.80433 0.83628 0.78841 1.90856 1.74718 1.31894 1.49841 1.47286 1.11482 1.10373 1.65471 1.22124 0.97843 0.85118 0.96582 1.21618 0.82568 1.01891 0.95917 1.48008 1.09969 1.12025 1.68208 1.18605 0.87572 0.81676 0.77097 1.90553 1.76881 1.29518 1.54516 1.21476 0.91768 1.00798 1.46369 0.88575 1.26924 1.05813 0.93712 0.91952 1.70167 1.38406 1.03131 1.33429 0.85160 0.75245 0.78443 0.80082 1.20384 1.17742 1.17789 1.22059 0.98980 0.85235 0.95150 1.22087 0.77777 1.03730 0.96631 0.92162 0.85263 0.91804 0.77003 0.80619 0.73405 0.90831 0.87072 0.90734 0.91800 0.91658 0.92001 0.88037 0.91156 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.40 113.37 1.18 1.61 16 2 O -0.31 -5.93 10.02 -90.99 -0.91 -6.84 16 3 C 0.24 5.27 7.60 85.06 0.65 5.92 16 4 N -0.30 -7.22 10.40 -169.88 -1.77 -8.98 16 5 N -0.25 -5.89 11.49 -57.32 -0.66 -6.55 16 6 C 0.05 0.85 11.30 84.75 0.96 1.81 16 7 C -0.11 -2.34 8.87 22.60 0.20 -2.14 16 8 C 0.15 3.41 6.51 38.55 0.25 3.66 16 9 N -0.66 -14.03 5.22 -316.14 -1.65 -15.68 16 10 C 0.71 18.14 8.13 179.06 1.46 19.60 16 11 O -0.59 -17.47 13.01 -3.99 -0.05 -17.52 16 12 N -0.61 -15.75 2.95 -835.15 -2.46 -18.21 16 13 C 0.11 2.66 6.59 86.41 0.57 3.23 16 14 C 0.10 3.49 6.60 86.41 0.57 4.06 16 15 N -0.65 -26.44 2.94 -822.24 -2.42 -28.86 16 16 C 0.54 29.39 7.62 86.36 0.66 30.05 16 17 O -0.63 -39.61 14.45 -4.31 -0.06 -39.67 16 18 C -0.57 -29.94 8.86 24.83 0.22 -29.72 16 19 H 0.10 4.44 5.66 -2.91 -0.02 4.42 16 20 C 0.03 1.66 5.50 85.30 0.47 2.13 16 21 N -0.82 -48.41 11.84 21.84 0.26 -48.15 16 22 Si 0.99 38.90 29.56 68.60 2.03 40.92 16 23 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 25 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 26 C 0.11 3.55 6.51 86.57 0.56 4.12 16 27 C 0.12 3.32 6.60 86.57 0.57 3.89 16 28 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 29 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.84 8.11 -2.39 -0.02 0.82 16 31 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.18 3.75 5.95 -2.91 -0.02 3.73 16 33 H 0.42 7.42 5.89 -92.71 -0.55 6.88 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 1.91 5.55 -2.39 -0.01 1.90 16 36 H 0.07 2.89 6.99 -2.38 -0.02 2.87 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.27 14.71 8.29 -92.71 -0.77 13.94 16 39 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.10 3.41 5.34 -2.39 -0.01 3.40 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.11 2.78 7.02 -2.39 -0.02 2.76 16 Total: -1.00 -77.61 349.96 1.17 -76.43 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.55 Total: 24.90 kcal Atomic # 6 Polarization: 39.91 SS G_CDS: 8.31 Total: 48.22 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -8.69 Total: -126.44 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -1.03 Total: -64.04 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.92 kcal Total: -77.61 1.17 -76.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425823671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.981 kcal (2) G-P(sol) polarization free energy of solvation -77.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds