Wall clock time and date at job start Tue Mar 31 2020 18:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39879 * 119.73788 * 2 1 4 4 C 1.30374 * 121.00741 * 179.74422 * 3 2 1 5 5 C 1.41075 * 120.41841 * 0.54089 * 4 3 2 6 6 N 1.38861 * 120.28058 * 179.74297 * 5 4 3 7 7 C 1.34774 * 120.00447 * 303.88044 * 6 5 4 8 8 O 1.21572 * 119.99641 * 354.93441 * 7 6 5 9 9 N 1.34779 * 120.00096 * 174.93480 * 7 6 5 10 10 C 1.46958 * 120.59097 * 185.13616 * 9 7 6 11 11 C 1.53372 * 108.63919 * 235.24883 * 10 9 7 12 12 N 1.46966 * 108.63136 * 310.58152 * 11 10 9 13 13 C 1.34782 * 120.59136 * 235.20009 * 12 11 10 14 14 O 1.21684 * 120.00018 * 4.85962 * 13 12 11 15 15 C 1.46373 * 119.99638 * 184.86017 * 13 12 11 16 16 H 1.07998 * 120.00207 * 354.88196 * 15 13 12 17 17 C 1.40054 * 119.99577 * 174.88293 * 15 13 12 18 18 N 1.30667 * 120.00207 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99677 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47119 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47270 * 300.00255 * 19 17 15 22 22 H 1.48506 * 109.47318 * 60.00409 * 19 17 15 23 23 C 1.46964 * 118.81409 * 55.47777 * 12 11 10 24 24 C 1.46964 * 120.59310 * 5.16568 * 9 7 6 25 25 C 1.38110 * 119.43121 * 359.46579 * 5 4 3 26 26 C 1.34771 * 119.73446 * 180.02562 * 2 1 3 27 27 O 1.22119 * 120.21447 * 0.02562 * 26 2 1 28 28 H 1.09003 * 109.46673 * 269.97437 * 1 2 3 29 29 H 1.08998 * 109.47025 * 29.97694 * 1 2 3 30 30 H 1.08997 * 109.46960 * 149.98136 * 1 2 3 31 31 H 1.08002 * 119.78493 * 180.26352 * 4 3 2 32 32 H 0.97002 * 119.99710 * 123.87812 * 6 5 4 33 33 H 1.09005 * 109.61018 * 115.50733 * 10 9 7 34 34 H 1.08998 * 109.61306 * 354.99653 * 10 9 7 35 35 H 1.08996 * 109.61326 * 190.83905 * 11 10 9 36 36 H 1.08998 * 109.74953 * 70.40417 * 11 10 9 37 37 H 0.97000 * 120.00194 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.61100 * 64.26440 * 23 12 11 39 39 H 1.09002 * 109.61203 * 184.77598 * 23 12 11 40 40 H 1.09000 * 109.60293 * 244.49332 * 24 9 7 41 41 H 1.09001 * 109.60959 * 4.82981 * 24 9 7 42 42 H 1.08001 * 120.48116 * 180.22996 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1589 1.2146 0.0000 4 6 3.4623 1.2435 0.0050 5 6 4.2034 0.0431 -0.0010 6 7 5.5915 0.0772 -0.0010 7 6 6.2492 0.7489 -0.9668 8 8 5.6324 1.2470 -1.8885 9 7 7.5905 0.8684 -0.9108 10 6 8.3097 1.6913 -1.8933 11 6 9.3821 0.8257 -2.5664 12 7 10.1516 0.1351 -1.5220 13 6 11.4930 0.2539 -1.4666 14 8 12.0692 1.0066 -2.2295 15 6 12.2567 -0.5225 -0.4885 16 1 11.7407 -1.1271 0.2426 17 6 13.6566 -0.4814 -0.5010 18 7 14.2809 0.2504 -1.3854 19 14 14.6311 -1.4717 0.7476 20 1 16.0836 -1.2587 0.5234 21 1 14.2714 -1.0304 2.1190 22 1 14.3132 -2.9140 0.5924 23 6 9.4329 -0.6924 -0.5429 24 6 8.3600 0.1777 0.1335 25 6 3.5363 -1.1663 -0.0009 26 6 2.1334 -1.1703 -0.0005 27 8 1.5219 -2.2273 -0.0015 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 3.9778 2.1925 0.0092 32 1 6.0880 -0.3824 0.6942 33 1 8.7831 2.5335 -1.3886 34 1 7.6107 2.0580 -2.6450 35 1 10.0479 1.4586 -3.1531 36 1 8.9076 0.0913 -3.2172 37 1 15.2504 0.2786 -1.3942 38 1 8.9595 -1.5324 -1.0512 39 1 10.1322 -1.0623 0.2069 40 1 8.8369 0.9122 0.7825 41 1 7.6937 -0.4528 0.7223 42 1 4.0868 -2.0955 -0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426355758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:08 Heat of formation + Delta-G solvation = 2.743290 kcal Electronic energy + Delta-G solvation = -28529.094678 eV Core-core repulsion = 24319.219558 eV Total energy + Delta-G solvation = -4209.875119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55532 -40.53471 -38.47342 -37.56677 -36.22413 -35.81784 -33.66846 -32.97736 -32.58607 -31.48884 -30.80853 -28.02102 -27.32268 -26.07964 -24.75839 -23.81063 -23.27342 -22.16527 -20.59963 -19.64953 -18.45819 -18.37127 -17.91966 -17.63055 -16.45251 -16.29534 -15.98370 -15.85648 -15.45094 -15.13933 -14.62670 -14.32391 -14.30014 -14.17055 -14.12052 -13.82763 -13.55448 -13.36664 -12.95994 -12.85186 -12.72110 -12.16620 -11.85912 -11.72868 -11.54099 -11.30446 -11.21941 -11.05472 -10.92535 -10.85632 -10.40054 -10.34638 -10.24698 -10.17752 -9.52913 -9.03944 -8.97621 -8.79845 -7.75606 -7.38919 -6.33292 -4.80112 -0.04616 1.39209 1.78670 2.20871 2.79119 3.05772 3.07997 3.11745 3.13217 3.43640 3.81593 3.95788 4.11549 4.30972 4.41963 4.56496 4.89519 4.97364 4.98652 5.06561 5.11119 5.26155 5.28684 5.32895 5.45084 5.47386 5.54448 5.65509 5.72373 5.80337 5.88475 6.10897 6.14418 6.20803 6.36800 6.42568 6.64830 7.23674 7.30518 7.37733 7.53125 7.56288 7.93800 8.15390 8.21608 8.87795 9.23865 10.41904 10.60453 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.002319 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.662574 B =12071.691582 C =12780.081384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.419 5.419 3 N -0.209 5.209 4 C 0.093 3.907 5 C 0.212 3.788 6 N -0.694 5.694 7 C 0.709 3.291 8 O -0.575 6.575 9 N -0.611 5.611 10 C 0.116 3.884 11 C 0.105 3.895 12 N -0.643 5.643 13 C 0.559 3.441 14 O -0.574 6.574 15 C -0.546 4.546 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.765 5.765 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.267 1.267 22 H -0.267 1.267 23 C 0.109 3.891 24 C 0.091 3.909 25 C -0.200 4.200 26 C 0.511 3.489 27 O -0.543 6.543 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.194 0.806 32 H 0.414 0.586 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.271 0.729 38 H 0.049 0.951 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.664 0.350 7.288 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.239 5.239 3 N -0.022 5.022 4 C -0.107 4.107 5 C 0.110 3.890 6 N -0.350 5.350 7 C 0.411 3.589 8 O -0.451 6.451 9 N -0.347 5.347 10 C -0.008 4.008 11 C -0.020 4.020 12 N -0.382 5.382 13 C 0.365 3.635 14 O -0.456 6.456 15 C -0.582 4.582 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.393 5.393 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.192 1.192 22 H -0.192 1.192 23 C -0.016 4.016 24 C -0.033 4.033 25 C -0.232 4.232 26 C 0.307 3.693 27 O -0.421 6.421 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.211 0.789 32 H 0.256 0.744 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.723 1.174 6.074 21.626 hybrid contribution 1.455 -1.392 1.059 2.275 sum -19.267 -0.218 7.134 20.547 Atomic orbital electron populations 1.21859 0.74576 1.04680 1.03508 1.49630 1.08625 1.02438 1.63190 1.75246 1.09194 1.06735 1.11020 1.24102 0.89226 0.99557 0.97826 1.18481 0.83970 0.93140 0.93414 1.42673 1.03644 1.57528 1.31108 1.15755 0.82171 0.79150 0.81840 1.90968 1.66633 1.53244 1.34302 1.47320 1.03386 1.51226 1.32802 1.22096 0.94298 0.92925 0.91442 1.21548 0.92952 0.96006 0.91456 1.48200 1.07183 1.51950 1.30841 1.18288 0.78240 0.82340 0.84616 1.90607 1.67614 1.41544 1.45834 1.20893 0.90908 1.29629 1.16771 0.90941 1.25728 0.98087 0.94219 0.95241 1.69984 1.09173 1.30635 1.29533 0.86436 0.78659 0.80548 0.81169 1.20504 1.19197 1.19227 1.21877 0.93919 0.92224 0.93627 1.22380 0.94392 0.96634 0.89863 1.22934 0.93620 0.99246 1.07441 1.17143 0.88720 0.83895 0.79577 1.91006 1.69714 1.28924 1.52484 0.90873 0.89313 0.88813 0.78916 0.74444 0.90886 0.88569 0.88335 0.93354 0.91846 0.93308 0.87401 0.90094 0.90805 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.72 59.85 0.64 1.35 16 2 N -0.42 -4.44 3.91 -70.38 -0.27 -4.72 16 3 N -0.21 -2.12 11.53 30.80 0.36 -1.77 16 4 C 0.09 0.89 10.22 -17.10 -0.17 0.71 16 5 C 0.21 2.05 5.77 -83.65 -0.48 1.57 16 6 N -0.69 -6.32 5.16 -14.13 -0.07 -6.39 16 7 C 0.71 8.91 8.09 -86.92 -0.70 8.20 16 8 O -0.57 -9.07 15.08 5.30 0.08 -8.99 16 9 N -0.61 -7.84 2.95 -177.95 -0.52 -8.37 16 10 C 0.12 1.69 6.60 -3.60 -0.02 1.67 16 11 C 0.11 1.88 6.60 -3.60 -0.02 1.86 16 12 N -0.64 -12.99 2.94 -173.88 -0.51 -13.50 16 13 C 0.56 14.58 7.62 -12.99 -0.10 14.49 16 14 O -0.57 -17.41 14.45 5.20 0.08 -17.33 16 15 C -0.55 -13.95 8.87 -35.63 -0.32 -14.27 16 16 H 0.07 1.63 5.66 -52.49 -0.30 1.34 16 17 C 0.09 2.28 5.50 -17.37 -0.10 2.18 16 18 N -0.77 -21.69 11.84 55.55 0.66 -21.03 16 19 Si 0.91 18.67 29.56 -169.99 -5.02 13.65 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 C 0.11 1.66 6.51 -3.37 -0.02 1.64 16 24 C 0.09 1.04 6.58 -3.37 -0.02 1.01 16 25 C -0.20 -2.06 9.97 -38.86 -0.39 -2.45 16 26 C 0.51 6.25 7.48 -15.49 -0.12 6.14 16 27 O -0.54 -8.14 16.69 4.81 0.08 -8.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.72 7.41 -51.93 -0.38 0.34 16 31 H 0.19 1.54 8.05 -52.49 -0.42 1.12 16 32 H 0.41 2.67 6.29 -40.82 -0.26 2.41 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.37 6.99 -51.93 -0.36 1.01 16 35 H 0.10 1.97 6.99 -51.93 -0.36 1.60 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.11 1.68 5.33 -51.93 -0.28 1.41 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.54 5.61 -51.93 -0.29 0.25 16 42 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -36.72 353.46 -6.40 -43.13 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.75 Total: 3.95 kcal Atomic # 6 Polarization: 25.92 SS G_CDS: -1.82 Total: 24.10 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.37 Total: -55.77 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: 0.24 Total: -34.38 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.72 -6.40 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426355758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.872 kcal (2) G-P(sol) polarization free energy of solvation -36.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds