Wall clock time and date at job start Tue Mar 31 2020 18:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39879 * 119.73788 * 2 1 4 4 C 1.30374 * 121.00741 * 179.74422 * 3 2 1 5 5 C 1.41075 * 120.41841 * 0.54089 * 4 3 2 6 6 N 1.38861 * 120.28058 * 179.74297 * 5 4 3 7 7 C 1.34774 * 120.00447 * 303.88044 * 6 5 4 8 8 O 1.21572 * 119.99641 * 354.93441 * 7 6 5 9 9 N 1.34779 * 120.00096 * 174.93480 * 7 6 5 10 10 C 1.46958 * 120.59097 * 185.13616 * 9 7 6 11 11 C 1.53372 * 108.63919 * 235.24883 * 10 9 7 12 12 N 1.46966 * 108.63136 * 310.58152 * 11 10 9 13 13 C 1.34782 * 120.59136 * 235.20009 * 12 11 10 14 14 O 1.21684 * 120.00018 * 4.85962 * 13 12 11 15 15 C 1.46373 * 119.99638 * 184.86017 * 13 12 11 16 16 H 1.07998 * 120.00207 * 354.88196 * 15 13 12 17 17 C 1.40054 * 119.99577 * 174.88293 * 15 13 12 18 18 N 1.30667 * 120.00207 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99677 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47119 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47270 * 300.00255 * 19 17 15 22 22 H 1.48506 * 109.47318 * 60.00409 * 19 17 15 23 23 C 1.46964 * 118.81409 * 55.47777 * 12 11 10 24 24 C 1.46964 * 120.59310 * 5.16568 * 9 7 6 25 25 C 1.38110 * 119.43121 * 359.46579 * 5 4 3 26 26 C 1.34771 * 119.73446 * 180.02562 * 2 1 3 27 27 O 1.22119 * 120.21447 * 0.02562 * 26 2 1 28 28 H 1.09003 * 109.46673 * 269.97437 * 1 2 3 29 29 H 1.08998 * 109.47025 * 29.97694 * 1 2 3 30 30 H 1.08997 * 109.46960 * 149.98136 * 1 2 3 31 31 H 1.08002 * 119.78493 * 180.26352 * 4 3 2 32 32 H 0.97002 * 119.99710 * 123.87812 * 6 5 4 33 33 H 1.09005 * 109.61018 * 115.50733 * 10 9 7 34 34 H 1.08998 * 109.61306 * 354.99653 * 10 9 7 35 35 H 1.08996 * 109.61326 * 190.83905 * 11 10 9 36 36 H 1.08998 * 109.74953 * 70.40417 * 11 10 9 37 37 H 0.97000 * 120.00194 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.61100 * 64.26440 * 23 12 11 39 39 H 1.09002 * 109.61203 * 184.77598 * 23 12 11 40 40 H 1.09000 * 109.60293 * 244.49332 * 24 9 7 41 41 H 1.09001 * 109.60959 * 4.82981 * 24 9 7 42 42 H 1.08001 * 120.48116 * 180.22996 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1589 1.2146 0.0000 4 6 3.4623 1.2435 0.0050 5 6 4.2034 0.0431 -0.0010 6 7 5.5915 0.0772 -0.0010 7 6 6.2492 0.7489 -0.9668 8 8 5.6324 1.2470 -1.8885 9 7 7.5905 0.8684 -0.9108 10 6 8.3097 1.6913 -1.8933 11 6 9.3821 0.8257 -2.5664 12 7 10.1516 0.1351 -1.5220 13 6 11.4930 0.2539 -1.4666 14 8 12.0692 1.0066 -2.2295 15 6 12.2567 -0.5225 -0.4885 16 1 11.7407 -1.1271 0.2426 17 6 13.6566 -0.4814 -0.5010 18 7 14.2809 0.2504 -1.3854 19 14 14.6311 -1.4717 0.7476 20 1 16.0836 -1.2587 0.5234 21 1 14.2714 -1.0304 2.1190 22 1 14.3132 -2.9140 0.5924 23 6 9.4329 -0.6924 -0.5429 24 6 8.3600 0.1777 0.1335 25 6 3.5363 -1.1663 -0.0009 26 6 2.1334 -1.1703 -0.0005 27 8 1.5219 -2.2273 -0.0015 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 3.9778 2.1925 0.0092 32 1 6.0880 -0.3824 0.6942 33 1 8.7831 2.5335 -1.3886 34 1 7.6107 2.0580 -2.6450 35 1 10.0479 1.4586 -3.1531 36 1 8.9076 0.0913 -3.2172 37 1 15.2504 0.2786 -1.3942 38 1 8.9595 -1.5324 -1.0512 39 1 10.1322 -1.0623 0.2069 40 1 8.8369 0.9122 0.7825 41 1 7.6937 -0.4528 0.7223 42 1 4.0868 -2.0955 -0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001426355758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:08 Heat of formation + Delta-G solvation = -25.583075 kcal Electronic energy + Delta-G solvation = -28530.323001 eV Core-core repulsion = 24319.219558 eV Total energy + Delta-G solvation = -4211.103443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43256 -41.53391 -39.92916 -38.61198 -37.61279 -36.83679 -34.94777 -34.53363 -34.02068 -32.55741 -31.86006 -29.21755 -28.52998 -27.58299 -25.55111 -24.94156 -24.39566 -23.39768 -21.84468 -20.88853 -19.73455 -19.21444 -18.78511 -18.56188 -18.02963 -17.59058 -17.16082 -16.86671 -16.69517 -16.30326 -15.96580 -15.87926 -15.70295 -15.36202 -14.96509 -14.67089 -14.51845 -14.37252 -14.30381 -13.77374 -13.58549 -13.47242 -13.42892 -13.12080 -12.84704 -12.68071 -12.63747 -12.42572 -12.27577 -12.01590 -11.96461 -11.77187 -11.40587 -11.15260 -10.88908 -10.40250 -10.04933 -9.80815 -9.76073 -8.98342 -8.26241 -6.80783 -0.84517 0.56732 1.03642 1.25329 1.44842 1.46946 1.58520 1.80748 2.23204 2.26049 2.49516 2.50264 2.84863 3.05428 3.35490 3.62290 3.79938 3.91595 3.97004 4.13139 4.18403 4.29924 4.41537 4.44965 4.48953 4.53193 4.59496 4.70348 4.74248 4.78636 4.82049 4.90198 4.91534 5.09712 5.25514 5.29769 5.42964 5.64909 5.75850 6.14798 6.36332 6.41507 6.61744 6.71545 6.91386 7.22901 7.42734 8.48827 8.69743 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.002319 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.662574 B =12071.691582 C =12780.081384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.420 5.420 3 N -0.214 5.214 4 C 0.094 3.906 5 C 0.217 3.783 6 N -0.674 5.674 7 C 0.715 3.285 8 O -0.606 6.606 9 N -0.612 5.612 10 C 0.131 3.869 11 C 0.107 3.893 12 N -0.645 5.645 13 C 0.542 3.458 14 O -0.632 6.632 15 C -0.565 4.565 16 H 0.102 0.898 17 C 0.028 3.972 18 N -0.824 5.824 19 Si 0.993 3.007 20 H -0.283 1.283 21 H -0.250 1.250 22 H -0.254 1.254 23 C 0.101 3.899 24 C 0.099 3.901 25 C -0.200 4.200 26 C 0.500 3.500 27 O -0.581 6.581 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.210 0.790 32 H 0.430 0.570 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.272 0.728 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.967 -0.697 9.835 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.239 5.239 3 N -0.028 5.028 4 C -0.106 4.106 5 C 0.115 3.885 6 N -0.330 5.330 7 C 0.417 3.583 8 O -0.485 6.485 9 N -0.347 5.347 10 C 0.007 3.993 11 C -0.018 4.018 12 N -0.382 5.382 13 C 0.348 3.652 14 O -0.519 6.519 15 C -0.601 4.601 16 H 0.120 0.880 17 C -0.187 4.187 18 N -0.453 5.453 19 Si 0.813 3.187 20 H -0.208 1.208 21 H -0.173 1.173 22 H -0.178 1.178 23 C -0.022 4.022 24 C -0.024 4.024 25 C -0.232 4.232 26 C 0.297 3.703 27 O -0.463 6.463 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.226 0.774 32 H 0.274 0.726 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.142 0.858 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -22.109 0.110 8.681 23.752 hybrid contribution 1.747 -1.032 0.214 2.041 sum -20.362 -0.922 8.895 22.239 Atomic orbital electron populations 1.22093 0.73127 1.05313 1.04747 1.49853 1.09741 1.02245 1.62051 1.75312 1.09585 1.06255 1.11599 1.24405 0.89137 1.00208 0.96855 1.18426 0.83993 0.92972 0.93150 1.42352 1.03353 1.56699 1.30591 1.15716 0.81777 0.78918 0.81859 1.90963 1.67163 1.54552 1.35773 1.47221 1.03647 1.51146 1.32674 1.21765 0.93377 0.92250 0.91919 1.21561 0.92989 0.96034 0.91223 1.48023 1.06081 1.52133 1.31979 1.18697 0.80231 0.81919 0.84310 1.90559 1.69753 1.43762 1.47821 1.21472 0.91617 1.29704 1.17281 0.88012 1.26984 0.99463 0.95012 0.97222 1.70184 1.09586 1.33221 1.32352 0.85127 0.76234 0.78947 0.78391 1.20821 1.17328 1.17790 1.22149 0.94591 0.92740 0.92769 1.22411 0.94125 0.96660 0.89181 1.22995 0.92938 1.00102 1.07204 1.17442 0.89468 0.83852 0.79508 1.90985 1.70498 1.30134 1.54647 0.89348 0.87502 0.89359 0.77396 0.72564 0.91121 0.88012 0.91471 0.92805 0.91766 0.91963 0.87611 0.89871 0.85767 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.72 127.77 1.37 2.56 16 2 N -0.42 -8.26 3.91 -494.62 -1.93 -10.20 16 3 N -0.21 -3.91 11.53 -56.46 -0.65 -4.56 16 4 C 0.09 1.53 10.22 85.61 0.87 2.41 16 5 C 0.22 3.55 5.77 38.69 0.22 3.77 16 6 N -0.67 -9.64 5.16 -316.88 -1.64 -11.28 16 7 C 0.71 15.71 8.09 179.05 1.45 17.15 16 8 O -0.61 -17.66 15.08 -3.94 -0.06 -17.72 16 9 N -0.61 -13.98 2.95 -835.17 -2.46 -16.44 16 10 C 0.13 3.71 6.60 86.42 0.57 4.28 16 11 C 0.11 3.86 6.60 86.42 0.57 4.43 16 12 N -0.65 -26.01 2.94 -822.24 -2.42 -28.43 16 13 C 0.54 29.01 7.62 86.36 0.66 29.67 16 14 O -0.63 -40.33 14.45 -4.30 -0.06 -40.39 16 15 C -0.56 -28.84 8.87 24.83 0.22 -28.62 16 16 H 0.10 4.40 5.66 -2.91 -0.02 4.38 16 17 C 0.03 1.48 5.50 85.31 0.47 1.95 16 18 N -0.82 -48.33 11.84 21.84 0.26 -48.07 16 19 Si 0.99 37.76 29.56 68.60 2.03 39.79 16 20 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 22 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 23 C 0.10 2.84 6.51 86.56 0.56 3.40 16 24 C 0.10 1.88 6.58 86.56 0.57 2.45 16 25 C -0.20 -3.66 9.97 22.74 0.23 -3.43 16 26 C 0.50 11.60 7.48 84.74 0.63 12.23 16 27 O -0.58 -17.14 16.69 -5.71 -0.10 -17.24 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.31 7.41 -2.39 -0.02 1.29 16 31 H 0.21 2.71 8.05 -2.91 -0.02 2.69 16 32 H 0.43 3.38 6.29 -92.71 -0.58 2.80 16 33 H 0.07 2.05 8.14 -2.38 -0.02 2.04 16 34 H 0.10 2.81 6.99 -2.39 -0.02 2.79 16 35 H 0.07 2.85 6.99 -2.39 -0.02 2.84 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.27 14.63 8.29 -92.71 -0.77 13.87 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.11 3.01 5.33 -2.39 -0.01 3.00 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.12 1.11 5.61 -2.39 -0.01 1.10 16 42 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -84.13 353.46 1.88 -82.25 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.51 Total: 20.02 kcal Atomic # 6 Polarization: 43.86 SS G_CDS: 8.40 Total: 52.26 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -8.84 Total: -118.97 kcal Atomic # 8 Polarization: -75.13 SS G_CDS: -0.22 Total: -75.35 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -84.13 1.88 -82.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426355758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.664 kcal (2) G-P(sol) polarization free energy of solvation -84.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds