Wall clock time and date at job start Tue Mar 31 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47435 * 125.58300 * 2 1 4 4 C 1.53018 * 103.21078 * 179.97438 * 3 2 1 5 5 C 1.52301 * 116.34466 * 228.67050 * 4 3 2 6 6 N 1.47287 * 87.67731 * 217.93162 * 5 4 3 7 7 C 1.34773 * 135.92564 * 206.10443 * 6 5 4 8 8 O 1.21592 * 120.00269 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00531 * 180.02562 * 7 6 5 10 10 C 1.40193 * 120.00654 * 180.02562 * 9 7 6 11 11 C 1.40405 * 125.97042 * 359.97438 * 10 9 7 12 12 C 1.35238 * 107.87064 * 179.81260 * 11 10 9 13 13 N 1.34966 * 107.85507 * 0.36692 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.89559 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31207 * 125.97782 * 180.02562 * 10 9 7 24 24 C 1.47284 * 88.15331 * 26.37182 * 6 5 4 25 25 O 1.44487 * 105.29092 * 0.02562 * 4 3 2 26 26 C 1.34198 * 125.58854 * 179.97438 * 2 1 3 27 27 O 1.21512 * 123.09651 * 0.03448 * 26 2 1 28 28 H 1.09003 * 109.46638 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.46898 * 300.01161 * 1 2 3 30 30 H 1.08994 * 109.46836 * 60.01924 * 1 2 3 31 31 H 1.08999 * 110.67044 * 61.52957 * 3 2 1 32 32 H 1.08994 * 110.67327 * 298.38918 * 3 2 1 33 33 H 1.09001 * 113.51674 * 103.23661 * 5 4 3 34 34 H 1.09002 * 113.52325 * 332.63428 * 5 4 3 35 35 H 0.97007 * 119.99520 * 0.02562 * 9 7 6 36 36 H 1.08009 * 126.06316 * 0.06000 * 11 10 9 37 37 H 1.07999 * 126.07487 * 180.25848 * 12 11 10 38 38 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 39 39 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 40 40 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 41 41 H 1.09004 * 113.52589 * 88.32959 * 24 6 5 42 42 H 1.09007 * 113.51762 * 218.92739 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3229 1.1990 0.0000 4 6 3.7379 0.6166 0.0007 5 6 4.7056 1.1931 1.0258 6 7 5.7590 1.0880 0.0018 7 6 7.1001 0.9542 0.0024 8 8 7.7046 0.8936 1.0557 9 7 7.7714 0.8877 -1.1644 10 6 9.1663 0.7480 -1.1637 11 6 9.9864 0.6658 -0.0270 12 6 11.2652 0.5336 -0.4466 13 7 11.2607 0.5399 -1.7962 14 6 12.4372 0.4225 -2.6613 15 6 12.2460 -0.7279 -3.6160 16 1 11.3387 -1.3127 -3.5819 17 6 13.2292 -1.0337 -4.5328 18 7 14.3318 -0.3181 -4.5778 19 14 12.9920 -2.4591 -5.7165 20 1 14.1819 -2.5744 -6.5974 21 1 12.8215 -3.7180 -4.9475 22 1 11.7838 -2.2181 -6.5456 23 7 9.9339 0.6723 -2.2252 24 6 4.7074 1.1997 -1.0233 25 8 3.5598 -0.8172 0.0004 26 6 2.2460 -1.0913 0.0005 27 8 1.8043 -2.2233 0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5135 -0.8901 31 1 2.1514 1.7948 0.8965 32 1 2.1525 1.7941 -0.8971 33 1 4.8678 0.5422 1.8849 34 1 4.4768 2.2201 1.3106 35 1 7.2892 0.9365 -2.0047 36 1 9.6543 0.6980 1.0002 37 1 12.1357 0.4413 0.1860 38 1 13.3216 0.2438 -2.0497 39 1 12.5664 1.3457 -3.2261 40 1 14.4550 0.4222 -3.9633 41 1 4.4789 2.2284 -1.3020 42 1 4.8710 0.5543 -1.8864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465685744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:59 Heat of formation + Delta-G solvation = 52.293933 kcal Electronic energy + Delta-G solvation = -27948.377709 eV Core-core repulsion = 23740.651266 eV Total energy + Delta-G solvation = -4207.726442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.60470 -40.83251 -40.06434 -38.52015 -36.83641 -36.03775 -34.83725 -33.66890 -31.37469 -30.43447 -29.38141 -28.40557 -26.97760 -26.48341 -25.80805 -23.19906 -22.72120 -21.83119 -20.98855 -20.31542 -19.42953 -18.17188 -17.64616 -17.61056 -17.17994 -16.85351 -16.66099 -16.47882 -15.73526 -15.45863 -14.81001 -14.78484 -14.51754 -14.42507 -14.25876 -13.83430 -13.74987 -13.56385 -13.23767 -13.11376 -13.01635 -12.47235 -12.41020 -12.25375 -12.22003 -11.82844 -11.16760 -11.12851 -10.95165 -10.81431 -10.51145 -10.20518 -10.15170 -9.79188 -9.55826 -9.28201 -8.98258 -8.57407 -8.20652 -7.50182 -6.57425 -4.31382 1.80730 1.93721 2.19499 2.52618 2.58841 2.95297 3.12839 3.28037 3.39230 3.40456 3.44899 3.59586 3.73313 3.89188 4.04347 4.32649 4.41809 4.49799 4.57196 4.65722 4.76221 4.85158 4.86769 4.91445 5.10472 5.14331 5.16176 5.30704 5.44695 5.69863 5.76544 6.16032 6.42703 6.47087 6.63583 6.72525 6.78771 6.92981 7.37589 7.51286 7.60788 7.78961 7.84199 8.35231 8.42072 8.54730 8.62835 9.36659 10.80087 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.002208 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.702277 B =12680.792666 C =13769.954911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.636 5.636 3 C 0.090 3.910 4 C 0.050 3.950 5 C 0.136 3.864 6 N -0.661 5.661 7 C 0.751 3.249 8 O -0.557 6.557 9 N -0.638 5.638 10 C 0.277 3.723 11 C -0.284 4.284 12 C 0.052 3.948 13 N -0.318 5.318 14 C 0.250 3.750 15 C -0.607 4.607 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.303 5.303 24 C 0.102 3.898 25 O -0.288 6.288 26 C 0.642 3.358 27 O -0.514 6.514 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.407 0.593 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.267 0.733 41 H 0.115 0.885 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.141 9.092 10.361 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.385 5.385 3 C -0.034 4.034 4 C 0.010 3.990 5 C 0.013 3.987 6 N -0.402 5.402 7 C 0.454 3.546 8 O -0.431 6.431 9 N -0.287 5.287 10 C 0.023 3.977 11 C -0.315 4.315 12 C -0.098 4.098 13 N -0.100 5.100 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.081 0.919 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.134 5.134 24 C -0.022 4.022 25 O -0.197 6.197 26 C 0.396 3.604 27 O -0.398 6.398 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.186 0.814 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.132 0.868 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.587 7.415 8.553 28.896 hybrid contribution -1.019 1.013 1.613 2.160 sum -27.606 8.427 10.166 30.601 Atomic orbital electron populations 1.21539 0.74562 1.04557 1.02080 1.48047 1.07587 1.05677 1.77225 1.22532 0.86502 0.89009 1.05393 1.23535 0.95014 0.79504 1.00944 1.22994 0.80669 1.01790 0.93296 1.48365 1.02885 1.78565 1.10409 1.14727 0.78579 0.77635 0.83705 1.90898 1.64903 1.56871 1.30438 1.41221 1.03809 1.75688 1.07962 1.18743 0.82686 1.02914 0.93362 1.21512 0.90650 1.19484 0.99892 1.22553 0.99158 1.02373 0.85681 1.48774 1.04930 1.51816 1.04440 1.19760 0.78604 0.98904 0.89593 1.22104 1.06997 1.15576 1.19883 0.91851 1.25924 0.92273 1.01876 0.98139 1.70854 1.26354 1.18885 1.37931 0.83421 0.76020 0.74518 0.75687 1.20526 1.21213 1.21155 1.77344 0.88448 1.27909 1.19695 1.23318 0.83116 1.01933 0.93809 1.87342 1.23463 1.22704 1.86223 1.18696 0.79925 0.85556 0.76264 1.91071 1.73315 1.20625 1.54786 0.89224 0.91366 0.91346 0.87853 0.87855 0.88383 0.86992 0.75846 0.82074 0.81437 0.93578 0.94773 0.92294 0.86760 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.37 11.24 59.85 0.67 1.04 16 2 N -0.64 -3.74 3.38 -186.97 -0.63 -4.37 16 3 C 0.09 0.21 7.23 -3.52 -0.03 0.18 16 4 C 0.05 0.29 1.91 -91.19 -0.17 0.11 16 5 C 0.14 0.86 8.13 -7.82 -0.06 0.79 16 6 N -0.66 -6.59 3.69 -191.10 -0.71 -7.29 16 7 C 0.75 11.37 8.76 -86.92 -0.76 10.61 16 8 O -0.56 -10.31 14.24 5.28 0.08 -10.24 16 9 N -0.64 -10.23 5.45 -15.51 -0.08 -10.32 16 10 C 0.28 5.69 8.11 -154.37 -1.25 4.44 16 11 C -0.28 -5.77 9.61 -39.83 -0.38 -6.16 16 12 C 0.05 1.06 11.44 -17.24 -0.20 0.86 16 13 N -0.32 -7.52 3.67 -62.56 -0.23 -7.75 16 14 C 0.25 6.36 5.57 -5.19 -0.03 6.33 16 15 C -0.61 -17.25 9.24 -34.44 -0.32 -17.56 16 16 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 18 N -0.90 -26.46 13.65 55.43 0.76 -25.71 16 19 Si 1.08 25.20 29.90 -169.99 -5.08 20.12 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.30 -7.10 12.42 31.44 0.39 -6.71 16 24 C 0.10 0.55 7.81 -7.68 -0.06 0.49 16 25 O -0.29 -3.10 10.98 -38.95 -0.43 -3.52 16 26 C 0.64 6.91 8.86 53.80 0.48 7.38 16 27 O -0.51 -7.68 17.32 -19.09 -0.33 -8.01 16 28 H 0.09 0.44 7.54 -51.93 -0.39 0.04 16 29 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.10 -0.01 7.99 -51.93 -0.42 -0.43 16 32 H 0.10 -0.01 7.99 -51.93 -0.41 -0.43 16 33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.41 5.37 8.53 -40.82 -0.35 5.02 16 36 H 0.16 3.21 5.91 -52.48 -0.31 2.90 16 37 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 38 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 39 H 0.03 0.90 8.00 -51.93 -0.42 0.49 16 40 H 0.27 7.62 7.22 -40.82 -0.29 7.33 16 41 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -40.32 365.23 -8.15 -48.47 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.17 Total: 0.76 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -2.21 Total: 9.07 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.50 Total: -62.15 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.68 Total: -21.77 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -40.32 -8.15 -48.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465685744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.761 kcal (2) G-P(sol) polarization free energy of solvation -40.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds