Wall clock time and date at job start Tue Mar 31 2020 18:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.53002 * 109.47004 * 240.00504 * 2 1 3 5 5 C 1.53002 * 109.46861 * 174.99749 * 4 2 1 6 6 N 1.46506 * 109.47035 * 179.97438 * 5 4 2 7 7 C 1.34769 * 120.00023 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00244 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99880 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47051 * 179.97438 * 9 7 6 11 11 N 1.29736 * 126.29516 * 269.97257 * 10 9 7 12 12 O 1.41345 * 109.74444 * 179.81945 * 11 10 9 13 13 C 1.34900 * 109.32682 * 0.35099 * 12 11 10 14 14 C 1.38955 * 133.34076 * 179.97438 * 13 12 11 15 15 C 1.37752 * 119.97163 * 179.67820 * 14 13 12 16 16 C 1.38998 * 120.58594 * 359.97428 * 15 14 13 17 17 F 1.35100 * 119.84301 * 180.02562 * 16 15 14 18 18 C 1.37792 * 120.31745 * 0.02562 * 16 15 14 19 19 C 1.39724 * 119.65629 * 359.97438 * 18 16 15 20 20 N 1.46493 * 109.47375 * 120.00534 * 2 1 3 21 21 C 1.36947 * 119.99764 * 274.99947 * 20 2 1 22 22 H 1.08000 * 119.99956 * 0.02562 * 21 20 2 23 23 C 1.38814 * 119.99514 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00540 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99403 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47556 * 90.00075 * 25 23 21 27 27 H 1.48500 * 109.46695 * 209.99672 * 25 23 21 28 28 H 1.48502 * 109.47333 * 329.99672 * 25 23 21 29 29 H 1.09000 * 109.46784 * 299.99609 * 1 2 3 30 30 H 1.09001 * 109.47161 * 59.99596 * 1 2 3 31 31 H 1.09004 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47028 * 55.00128 * 4 2 1 33 33 H 1.08996 * 109.47234 * 294.99616 * 4 2 1 34 34 H 1.09000 * 109.46990 * 60.00356 * 5 4 2 35 35 H 1.09004 * 109.47287 * 299.99746 * 5 4 2 36 36 H 0.97007 * 119.99756 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47483 * 59.99991 * 9 7 6 38 38 H 1.08996 * 109.47185 * 299.99655 * 9 7 6 39 39 H 1.07998 * 120.01232 * 359.69362 * 14 13 12 40 40 H 1.08006 * 119.70684 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.17381 * 179.97438 * 18 16 15 42 42 H 0.96994 * 120.00159 * 95.00015 * 20 2 1 43 43 H 0.97000 * 119.99954 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 7 4.0532 -1.3042 -2.5097 7 6 5.3741 -1.3404 -2.7748 8 8 6.1585 -0.8006 -2.0236 9 6 5.8764 -2.0508 -4.0053 10 6 7.3783 -1.9445 -4.0688 11 7 8.0578 -1.0036 -4.6486 12 8 9.4412 -1.2473 -4.4913 13 6 9.6170 -2.3879 -3.7929 14 6 10.7433 -3.0795 -3.3638 15 6 10.6021 -4.2454 -2.6438 16 6 9.3393 -4.7403 -2.3396 17 9 9.2183 -5.8849 -1.6322 18 6 8.2103 -4.0691 -2.7561 19 6 8.3399 -2.8854 -3.4871 20 7 2.0184 -0.6907 1.1960 21 6 2.1492 -0.0076 2.3757 22 1 1.8919 1.0402 2.4244 23 6 2.6125 -0.6619 3.5089 24 7 2.9255 -1.9390 3.4497 25 14 2.7902 0.2697 5.1182 26 1 1.5227 0.1774 5.8863 27 1 3.8953 -0.3229 5.9137 28 1 3.0941 1.6953 4.8340 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2615 -2.1370 33 1 1.7517 -1.7714 -1.2058 34 1 3.9994 -1.0727 -0.4261 35 1 3.8532 0.4372 -1.3574 36 1 3.4258 -1.7356 -3.1108 37 1 5.4422 -1.5909 -4.8931 38 1 5.5877 -3.1009 -3.9620 39 1 11.7288 -2.7029 -3.5944 40 1 11.4804 -4.7797 -2.3128 41 1 7.2303 -4.4560 -2.5188 42 1 2.2491 -1.6318 1.1524 43 1 3.2496 -2.3961 4.2415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480796385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:30 Heat of formation + Delta-G solvation = -37.913280 kcal Electronic energy + Delta-G solvation = -27595.662828 eV Core-core repulsion = 23364.104746 eV Total energy + Delta-G solvation = -4231.558082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.98590 -42.98050 -40.79834 -38.57939 -38.16926 -35.97784 -35.67949 -34.15875 -32.00144 -31.54942 -30.84856 -30.45410 -29.12335 -25.86792 -24.82746 -24.19707 -23.87198 -22.41756 -21.61934 -20.91482 -19.37139 -19.28883 -18.56896 -18.26201 -17.71867 -17.15374 -17.02972 -16.84106 -16.62312 -16.50276 -16.09380 -15.70944 -15.41721 -15.29851 -14.93547 -14.74634 -14.60071 -14.33898 -14.13670 -13.98754 -13.55394 -13.39163 -13.22732 -13.00345 -12.82495 -12.69519 -12.62527 -12.38687 -12.29193 -12.22561 -12.21306 -12.11847 -11.64368 -11.59451 -11.05731 -10.92065 -10.21857 -10.13857 -9.60889 -8.97065 -7.93060 -5.19140 -0.64930 -0.10241 0.73903 1.26305 1.45334 1.46743 1.51784 1.54449 2.09503 2.31356 2.56656 2.73511 2.91114 3.19462 3.36994 3.41412 3.64961 3.85558 3.91415 3.93470 4.02735 4.11024 4.19409 4.24090 4.28303 4.39197 4.51064 4.68133 4.72433 4.79512 4.81495 4.85543 4.89967 4.92572 5.04503 5.12107 5.23531 5.41654 5.42721 5.46450 5.54519 5.63199 5.99011 6.30507 6.50637 7.21323 7.36740 8.15171 8.36119 9.30349 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.002601 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.882909 B =10761.238397 C =12170.879002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.039 0.961 4 C -0.115 4.115 5 C 0.132 3.868 6 N -0.704 5.704 7 C 0.510 3.490 8 O -0.589 6.589 9 C -0.068 4.068 10 C 0.157 3.843 11 N -0.301 5.301 12 O -0.107 6.107 13 C 0.053 3.947 14 C -0.091 4.091 15 C -0.081 4.081 16 C 0.062 3.938 17 F -0.137 7.137 18 C -0.079 4.079 19 C -0.178 4.178 20 N -0.735 5.735 21 C -0.233 4.233 22 H 0.072 0.928 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.963 3.037 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.273 1.273 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.423 0.577 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.180 0.820 40 H 0.188 0.812 41 H 0.161 0.839 42 H 0.373 0.627 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.887 -7.129 -22.464 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.057 0.943 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.356 5.356 7 C 0.296 3.704 8 O -0.469 6.469 9 C -0.108 4.108 10 C -0.025 4.025 11 N -0.044 5.044 12 O -0.117 6.117 13 C -0.001 4.001 14 C -0.110 4.110 15 C -0.100 4.100 16 C 0.042 3.958 17 F -0.116 7.116 18 C -0.100 4.100 19 C -0.182 4.182 20 N -0.376 5.376 21 C -0.365 4.365 22 H 0.090 0.910 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.793 3.207 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.198 1.198 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.262 0.738 37 H 0.178 0.822 38 H 0.187 0.813 39 H 0.197 0.803 40 H 0.205 0.795 41 H 0.178 0.822 42 H 0.205 0.795 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.486 -5.454 -22.527 25.044 hybrid contribution -0.056 -0.737 1.798 1.944 sum 9.430 -6.191 -20.730 23.600 Atomic orbital electron populations 1.22264 0.97116 1.01119 1.00813 1.20474 0.93173 0.95148 0.85843 0.94269 1.21910 0.92247 1.02329 0.98808 1.21109 0.95478 0.96016 0.86577 1.45745 1.06853 1.56252 1.26798 1.20737 0.82731 0.80097 0.86873 1.90802 1.56739 1.47769 1.51573 1.20493 0.84603 1.06999 0.98687 1.24219 0.97682 0.89727 0.90831 1.79800 0.84927 1.18569 1.21140 1.89118 1.20980 1.36546 1.65035 1.20777 0.96400 0.88114 0.94772 1.20250 0.97192 0.94170 0.99401 1.21492 0.97286 0.95218 0.96052 1.17537 0.94546 0.85482 0.98218 1.91537 1.96865 1.46934 1.76224 1.20768 1.00389 0.92898 0.95931 1.20517 0.91298 0.99388 1.06993 1.42641 1.78387 1.10268 1.06262 1.19579 1.34321 0.94037 0.88537 0.91017 1.25445 1.03351 0.96867 1.01192 1.69791 1.52910 1.10075 1.29165 0.85278 0.76842 0.78055 0.80488 1.21317 1.22614 1.19805 0.95073 0.90553 0.93465 0.87433 0.90505 0.94536 0.93432 0.73834 0.82205 0.81318 0.80253 0.79473 0.82171 0.79540 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.49 71.98 0.68 -4.15 16 2 C 0.16 5.82 2.89 44.99 0.13 5.95 16 3 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 4 C -0.11 -2.98 4.87 30.60 0.15 -2.83 16 5 C 0.13 4.09 5.56 86.38 0.48 4.57 16 6 N -0.70 -15.08 5.56 -463.05 -2.57 -17.65 16 7 C 0.51 13.04 7.82 87.66 0.69 13.72 16 8 O -0.59 -22.93 16.03 -3.04 -0.05 -22.98 16 9 C -0.07 -1.02 6.30 29.10 0.18 -0.83 16 10 C 0.16 3.70 5.95 45.04 0.27 3.97 16 11 N -0.30 -8.51 12.81 -43.47 -0.56 -9.07 16 12 O -0.11 -3.01 12.07 29.09 0.35 -2.65 16 13 C 0.05 1.24 7.48 22.98 0.17 1.41 16 14 C -0.09 -1.42 10.06 22.33 0.22 -1.20 16 15 C -0.08 -1.13 9.99 22.34 0.22 -0.90 16 16 C 0.06 1.15 7.29 22.35 0.16 1.32 16 17 F -0.14 -2.77 17.26 44.97 0.78 -2.00 16 18 C -0.08 -1.60 10.08 22.52 0.23 -1.37 16 19 C -0.18 -4.17 6.32 -20.21 -0.13 -4.30 16 20 N -0.73 -35.69 4.57 -322.94 -1.48 -37.16 16 21 C -0.23 -12.89 9.93 84.03 0.83 -12.06 16 22 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 23 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 24 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 25 Si 0.96 47.26 29.55 68.60 2.03 49.29 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 28 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16 35 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.42 4.83 8.47 -92.70 -0.79 4.04 16 37 H 0.16 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.17 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.37 19.46 7.80 -92.71 -0.72 18.74 16 43 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -83.53 379.32 3.10 -80.43 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.44 Total: 22.00 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.76 Total: -0.67 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -4.32 Total: -123.41 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.30 Total: -25.63 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -83.53 3.10 -80.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480796385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.519 kcal (2) G-P(sol) polarization free energy of solvation -83.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds