Wall clock time and date at job start Tue Mar 31 2020 18:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46811 * 2 1 4 4 C 1.36933 * 120.00018 * 275.30815 * 3 2 1 5 5 H 1.08001 * 120.00060 * 37.58309 * 4 3 2 6 6 C 1.38814 * 120.00168 * 217.57264 * 4 3 2 7 7 N 1.31616 * 119.99774 * 21.43665 * 6 4 3 8 8 Si 1.86796 * 120.00093 * 201.43767 * 6 4 3 9 9 H 1.48491 * 109.47227 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47069 * 120.00254 * 8 6 4 11 11 H 1.48508 * 109.47092 * 240.00042 * 8 6 4 12 12 C 1.46505 * 119.99851 * 95.31186 * 3 2 1 13 13 C 1.53004 * 109.46854 * 270.00091 * 12 3 2 14 14 N 1.46503 * 109.46763 * 179.97438 * 13 12 3 15 15 C 1.34775 * 119.99760 * 179.97438 * 14 13 12 16 16 O 1.21591 * 120.00108 * 359.72655 * 15 14 13 17 17 C 1.47522 * 120.00062 * 180.02562 * 15 14 13 18 18 N 1.34408 * 125.76526 * 359.41488 * 17 15 14 19 19 N 1.28769 * 109.51599 * 179.88155 * 18 17 15 20 20 N 1.40204 * 108.36971 * 0.38110 * 19 18 17 21 21 C 1.46503 * 126.59585 * 179.74569 * 20 19 18 22 22 C 1.34820 * 106.81225 * 359.76583 * 20 19 18 23 23 C 1.50698 * 126.57773 * 180.02562 * 22 20 19 24 24 F 1.39897 * 109.47642 * 30.00079 * 23 22 20 25 25 F 1.39902 * 109.46592 * 150.00276 * 23 22 20 26 26 F 1.39898 * 109.46919 * 269.99486 * 23 22 20 27 27 H 1.08995 * 109.47206 * 60.00220 * 1 2 3 28 28 H 1.09003 * 109.46778 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47214 * 299.99686 * 1 2 3 30 30 H 1.09008 * 109.47416 * 240.00425 * 2 1 3 31 31 H 1.08998 * 109.47706 * 119.99872 * 2 1 3 32 32 H 0.96998 * 120.00177 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.46977 * 149.99685 * 12 3 2 34 34 H 1.08999 * 109.46734 * 29.99676 * 12 3 2 35 35 H 1.09000 * 109.47370 * 60.00238 * 13 12 3 36 36 H 1.08996 * 109.46831 * 300.00054 * 13 12 3 37 37 H 0.96995 * 120.00014 * 0.02562 * 14 13 12 38 38 H 1.09003 * 109.47080 * 270.02665 * 21 20 19 39 39 H 1.09003 * 109.47016 * 30.02272 * 21 20 19 40 40 H 1.08998 * 109.47085 * 150.02857 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2110 2.9292 -1.3728 7 7 4.3025 2.7983 -0.6491 8 14 3.0989 4.2799 -2.6582 9 1 1.7768 4.2144 -3.3311 10 1 3.2545 5.6025 -2.0013 11 1 4.1763 4.0968 -3.6638 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7382 1.8366 14 7 1.4971 3.3891 3.1003 15 6 0.5647 4.0764 3.7892 16 8 -0.5696 4.1604 3.3595 17 6 0.9220 4.7324 5.0613 18 7 2.1332 4.7102 5.6436 19 7 2.0959 5.3848 6.7398 20 7 0.7951 5.8792 6.9104 21 6 0.3100 6.6943 8.0269 22 6 0.0764 5.4599 5.8496 23 6 -1.3803 5.7406 5.5843 24 9 -1.7268 6.9752 6.1436 25 9 -1.6046 5.7746 4.2038 26 9 -2.1616 4.7324 6.1589 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.0489 3.4030 -0.7834 33 1 3.1615 2.7641 1.0860 34 1 2.7254 1.2833 1.9721 35 1 0.3540 2.0067 2.0140 36 1 0.7901 3.4875 1.1278 37 1 2.4032 3.3261 3.4407 38 1 -0.0673 6.0430 8.8153 39 1 1.1279 7.3003 8.4166 40 1 -0.4917 7.3461 7.6795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481003542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:53 Heat of formation + Delta-G solvation = -55.035530 kcal Electronic energy + Delta-G solvation = -29791.359826 eV Core-core repulsion = 25037.122489 eV Total energy + Delta-G solvation = -4754.237337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.53008 -48.15281 -47.80601 -42.76086 -39.15662 -36.31470 -35.32617 -34.12484 -32.22563 -31.86882 -29.83441 -28.63268 -27.43651 -26.66523 -24.46972 -23.65172 -22.37410 -21.66940 -20.57934 -20.21448 -18.93513 -18.88574 -18.56577 -17.78170 -16.78685 -16.55337 -16.05853 -15.43352 -15.21182 -15.07518 -14.79222 -14.64534 -14.41777 -14.23338 -14.02925 -13.97314 -13.90367 -13.69807 -13.62378 -13.55476 -13.13441 -12.65541 -12.37486 -12.25014 -12.03539 -11.80399 -11.49670 -11.11438 -11.00024 -10.76832 -10.63761 -10.47743 -10.10660 -9.97164 -9.87338 -9.83734 -9.67917 -8.60913 -8.46319 -6.61469 -5.81967 -3.40913 0.25484 1.20665 1.35075 2.10374 3.06140 3.18504 3.25295 3.36528 3.45277 3.48762 3.52475 3.86839 3.92672 4.14519 4.44021 4.46937 4.55172 4.77101 4.84825 5.27030 5.30639 5.54304 5.57026 6.00059 6.10118 6.17136 6.39682 6.41440 6.51821 6.69908 6.76985 6.93378 7.00793 7.18175 7.31324 7.55947 7.81336 7.82884 8.36034 8.49877 9.15895 9.77887 10.35858 11.18132 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.003160 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.503639 B = 8857.292977 C = 9176.432567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.262 4.262 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.096 3.904 14 N -0.694 5.694 15 C 0.582 3.418 16 O -0.522 6.522 17 C -0.020 4.020 18 N -0.197 5.197 19 N -0.028 5.028 20 N -0.328 5.328 21 C 0.066 3.934 22 C -0.002 4.002 23 C 0.547 3.453 24 F -0.176 7.176 25 F -0.120 7.120 26 F -0.161 7.161 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.255 0.745 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.406 0.594 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 7.163 19.183 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.009 3.991 13 C -0.028 4.028 14 N -0.344 5.344 15 C 0.363 3.637 16 O -0.398 6.398 17 C -0.162 4.162 18 N -0.068 5.068 19 N -0.008 5.008 20 N -0.115 5.115 21 C -0.074 4.074 22 C -0.141 4.141 23 C 0.490 3.510 24 F -0.158 7.158 25 F -0.100 7.100 26 F -0.142 7.142 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.241 0.759 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.070 7.213 19.424 22.236 hybrid contribution -0.737 1.040 -0.547 1.387 sum -8.808 8.252 18.877 22.405 Atomic orbital electron populations 1.22389 0.99891 0.99088 1.01414 1.20888 0.91771 0.86953 0.98931 1.43618 1.76033 1.08277 1.02042 1.19057 1.04814 1.21293 0.93965 0.92002 1.25187 0.94163 1.01189 0.98087 1.69997 1.03166 1.37215 1.42400 0.86352 0.77771 0.82221 0.81210 1.19947 1.21386 1.21599 1.21068 0.94443 0.97101 0.86488 1.22632 1.01509 0.96695 0.82007 1.45956 1.13155 1.51253 1.23992 1.16767 0.85835 0.79558 0.81576 1.90909 1.19475 1.60937 1.68435 1.21704 0.89403 1.04992 1.00096 1.74803 1.18815 1.11529 1.01682 1.82097 0.94631 1.11297 1.12756 1.50304 1.08817 1.35940 1.16424 1.22686 1.02904 0.95376 0.86427 1.21623 0.94578 1.04636 0.93245 1.16894 0.82963 0.74219 0.76928 1.93141 1.93097 1.44178 1.85358 1.93495 1.94585 1.95610 1.26342 1.93278 1.75952 1.60340 1.84621 0.93089 0.94470 0.93634 0.93567 0.94691 0.93519 0.88261 0.95076 0.92439 0.91167 0.75882 0.88273 0.86929 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 10.21 37.16 0.38 -2.71 16 2 C 0.14 2.93 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -14.00 2.43 -173.23 -0.42 -14.42 16 4 C -0.26 -6.99 9.45 -15.06 -0.14 -7.14 16 5 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 7 N -0.89 -24.76 11.47 55.49 0.64 -24.12 16 8 Si 0.90 21.40 29.60 -169.99 -5.03 16.37 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.14 3.04 5.45 -4.04 -0.02 3.01 16 13 C 0.10 1.94 6.00 -4.04 -0.02 1.91 16 14 N -0.69 -12.16 5.55 -61.35 -0.34 -12.50 16 15 C 0.58 10.12 7.76 -12.48 -0.10 10.02 16 16 O -0.52 -10.17 13.05 5.29 0.07 -10.10 16 17 C -0.02 -0.30 6.96 -83.55 -0.58 -0.88 16 18 N -0.20 -2.86 12.04 32.85 0.40 -2.46 16 19 N -0.03 -0.35 13.78 60.35 0.83 0.48 16 20 N -0.33 -3.32 4.03 -63.59 -0.26 -3.58 16 21 C 0.07 0.31 11.25 59.85 0.67 0.98 16 22 C 0.00 -0.02 6.46 -81.88 -0.53 -0.55 16 23 C 0.55 6.50 3.24 36.00 0.12 6.62 16 24 F -0.18 -1.62 14.67 2.25 0.03 -1.58 16 25 F -0.12 -1.80 13.42 2.25 0.03 -1.77 16 26 F -0.16 -1.91 17.30 2.25 0.04 -1.87 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.84 6.64 -51.93 -0.34 0.49 16 30 H 0.05 0.98 8.08 -51.92 -0.42 0.56 16 31 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 32 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.10 2.49 5.52 -51.93 -0.29 2.21 16 34 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 35 H 0.06 1.16 6.64 -51.93 -0.34 0.81 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.41 6.54 8.16 -40.82 -0.33 6.20 16 38 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.11 0.42 5.68 -51.93 -0.30 0.13 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -31.05 350.21 -3.58 -34.63 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.50 Total: 1.18 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -0.34 Total: 14.47 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.85 Total: -56.61 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.10 Total: -5.22 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.05 -3.58 -34.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481003542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.404 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds