Wall clock time and date at job start Tue Mar 31 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46811 * 2 1 4 4 C 1.36933 * 120.00018 * 275.30815 * 3 2 1 5 5 H 1.08001 * 120.00060 * 37.58309 * 4 3 2 6 6 C 1.38814 * 120.00168 * 217.57264 * 4 3 2 7 7 N 1.31616 * 119.99774 * 21.43665 * 6 4 3 8 8 Si 1.86796 * 120.00093 * 201.43767 * 6 4 3 9 9 H 1.48491 * 109.47227 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47069 * 120.00254 * 8 6 4 11 11 H 1.48508 * 109.47092 * 240.00042 * 8 6 4 12 12 C 1.46505 * 119.99851 * 95.31186 * 3 2 1 13 13 C 1.53004 * 109.46854 * 270.00091 * 12 3 2 14 14 N 1.46503 * 109.46763 * 179.97438 * 13 12 3 15 15 C 1.34775 * 119.99760 * 179.97438 * 14 13 12 16 16 O 1.21591 * 120.00108 * 359.72655 * 15 14 13 17 17 C 1.47522 * 120.00062 * 180.02562 * 15 14 13 18 18 N 1.34408 * 125.76526 * 359.41488 * 17 15 14 19 19 N 1.28769 * 109.51599 * 179.88155 * 18 17 15 20 20 N 1.40204 * 108.36971 * 0.38110 * 19 18 17 21 21 C 1.46503 * 126.59585 * 179.74569 * 20 19 18 22 22 C 1.34820 * 106.81225 * 359.76583 * 20 19 18 23 23 C 1.50698 * 126.57773 * 180.02562 * 22 20 19 24 24 F 1.39897 * 109.47642 * 30.00079 * 23 22 20 25 25 F 1.39902 * 109.46592 * 150.00276 * 23 22 20 26 26 F 1.39898 * 109.46919 * 269.99486 * 23 22 20 27 27 H 1.08995 * 109.47206 * 60.00220 * 1 2 3 28 28 H 1.09003 * 109.46778 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47214 * 299.99686 * 1 2 3 30 30 H 1.09008 * 109.47416 * 240.00425 * 2 1 3 31 31 H 1.08998 * 109.47706 * 119.99872 * 2 1 3 32 32 H 0.96998 * 120.00177 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.46977 * 149.99685 * 12 3 2 34 34 H 1.08999 * 109.46734 * 29.99676 * 12 3 2 35 35 H 1.09000 * 109.47370 * 60.00238 * 13 12 3 36 36 H 1.08996 * 109.46831 * 300.00054 * 13 12 3 37 37 H 0.96995 * 120.00014 * 0.02562 * 14 13 12 38 38 H 1.09003 * 109.47080 * 270.02665 * 21 20 19 39 39 H 1.09003 * 109.47016 * 30.02272 * 21 20 19 40 40 H 1.08998 * 109.47085 * 150.02857 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2110 2.9292 -1.3728 7 7 4.3025 2.7983 -0.6491 8 14 3.0989 4.2799 -2.6582 9 1 1.7768 4.2144 -3.3311 10 1 3.2545 5.6025 -2.0013 11 1 4.1763 4.0968 -3.6638 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7382 1.8366 14 7 1.4971 3.3891 3.1003 15 6 0.5647 4.0764 3.7892 16 8 -0.5696 4.1604 3.3595 17 6 0.9220 4.7324 5.0613 18 7 2.1332 4.7102 5.6436 19 7 2.0959 5.3848 6.7398 20 7 0.7951 5.8792 6.9104 21 6 0.3100 6.6943 8.0269 22 6 0.0764 5.4599 5.8496 23 6 -1.3803 5.7406 5.5843 24 9 -1.7268 6.9752 6.1436 25 9 -1.6046 5.7746 4.2038 26 9 -2.1616 4.7324 6.1589 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.0489 3.4030 -0.7834 33 1 3.1615 2.7641 1.0860 34 1 2.7254 1.2833 1.9721 35 1 0.3540 2.0067 2.0140 36 1 0.7901 3.4875 1.1278 37 1 2.4032 3.3261 3.4407 38 1 -0.0673 6.0430 8.8153 39 1 1.1279 7.3003 8.4166 40 1 -0.4917 7.3461 7.6795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481003542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:52 Heat of formation + Delta-G solvation = -76.516199 kcal Electronic energy + Delta-G solvation = -29792.291298 eV Core-core repulsion = 25037.122489 eV Total energy + Delta-G solvation = -4755.168809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.46428 -49.03543 -48.83419 -43.75303 -40.56713 -38.09244 -36.23464 -35.62052 -33.81102 -33.25258 -31.39797 -29.81441 -28.78227 -27.64833 -26.22657 -24.95179 -23.51311 -22.97886 -22.14593 -21.73826 -19.90956 -19.86375 -19.54633 -19.01771 -18.35779 -17.70030 -17.21818 -16.92752 -16.73977 -16.37146 -15.89892 -15.73622 -15.56645 -15.50196 -15.36518 -15.19357 -15.02559 -14.92276 -14.66940 -14.55556 -14.21895 -14.07456 -13.98652 -13.72166 -13.21090 -13.13116 -13.01000 -12.71937 -12.63161 -12.34465 -12.27061 -12.00972 -11.83111 -11.66347 -11.52950 -11.27492 -10.87487 -10.53482 -10.08174 -8.58330 -7.83917 -5.46976 -0.71715 0.23076 0.34515 1.22243 1.44121 1.49252 1.58302 1.87829 1.93501 2.16544 2.51229 2.56455 2.90692 2.97833 3.10616 3.25016 3.51290 3.79152 4.00734 4.15744 4.33818 4.37177 4.43706 4.50496 4.50660 4.75487 4.79856 4.85276 4.88052 5.12136 5.20642 5.32076 5.32922 5.60275 5.67840 5.76419 6.22299 6.45886 6.51032 6.97974 7.17139 7.84543 8.36948 9.12081 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.003160 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.503639 B = 8857.292977 C = 9176.432567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.269 4.269 5 H 0.054 0.946 6 C -0.028 4.028 7 N -0.911 5.911 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.288 1.288 12 C 0.144 3.856 13 C 0.119 3.881 14 N -0.693 5.693 15 C 0.584 3.416 16 O -0.546 6.546 17 C -0.043 4.043 18 N -0.214 5.214 19 N -0.032 5.032 20 N -0.305 5.305 21 C 0.050 3.950 22 C 0.004 3.996 23 C 0.554 3.446 24 F -0.157 7.157 25 F -0.140 7.140 26 F -0.159 7.159 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.253 0.747 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.413 0.587 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 7.825 21.080 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.399 4.399 5 H 0.072 0.928 6 C -0.226 4.226 7 N -0.555 5.555 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.217 1.217 11 H -0.214 1.214 12 C 0.016 3.984 13 C -0.006 4.006 14 N -0.343 5.343 15 C 0.366 3.634 16 O -0.423 6.423 17 C -0.185 4.185 18 N -0.085 5.085 19 N -0.012 5.012 20 N -0.092 5.092 21 C -0.088 4.088 22 C -0.137 4.137 23 C 0.496 3.504 24 F -0.138 7.138 25 F -0.121 7.121 26 F -0.141 7.141 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.249 0.751 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.971 7.880 21.367 24.477 hybrid contribution -0.511 0.867 -0.980 1.405 sum -9.482 8.747 20.388 24.126 Atomic orbital electron populations 1.22212 0.97785 1.00878 1.00544 1.21024 0.93314 0.85339 0.99251 1.43853 1.76390 1.09659 1.01890 1.19206 1.04360 1.21657 0.94711 0.92803 1.25764 0.94014 1.02875 0.99982 1.70093 1.03612 1.37899 1.43850 0.85500 0.77724 0.79711 0.79273 1.19505 1.21744 1.21433 1.20912 0.94368 0.96802 0.86278 1.22102 1.00298 0.95724 0.82491 1.45791 1.13745 1.51533 1.23268 1.17002 0.85239 0.78938 0.82185 1.90892 1.20362 1.61686 1.69352 1.21285 0.90494 1.06847 0.99877 1.74777 1.18894 1.12420 1.02383 1.82022 0.95729 1.11326 1.12130 1.50691 1.07631 1.34484 1.16368 1.23299 1.04296 0.95804 0.85387 1.21593 0.94677 1.03985 0.93434 1.16739 0.82653 0.74889 0.76083 1.93180 1.92902 1.42833 1.84867 1.93453 1.94683 1.95774 1.28220 1.93281 1.75850 1.60491 1.84433 0.94580 0.91306 0.93802 0.94493 0.93074 0.93766 0.90999 0.93740 0.92191 0.94049 0.75061 0.85572 0.84493 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 10.21 71.98 0.73 -4.76 16 2 C 0.14 5.57 6.44 86.38 0.56 6.13 16 3 N -0.60 -29.07 2.43 -701.98 -1.71 -30.78 16 4 C -0.27 -14.58 9.45 84.03 0.79 -13.79 16 5 H 0.05 2.95 7.92 -2.91 -0.02 2.93 16 6 C -0.03 -1.55 4.95 84.86 0.42 -1.13 16 7 N -0.91 -51.79 11.47 21.65 0.25 -51.54 16 8 Si 0.95 44.59 29.60 68.60 2.03 46.62 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 C 0.14 6.47 5.45 86.38 0.47 6.94 16 13 C 0.12 4.88 6.00 86.38 0.52 5.40 16 14 N -0.69 -24.63 5.55 -466.28 -2.59 -27.22 16 15 C 0.58 20.44 7.76 86.69 0.67 21.11 16 16 O -0.55 -21.48 13.05 -4.00 -0.05 -21.53 16 17 C -0.04 -1.25 6.96 40.81 0.28 -0.97 16 18 N -0.21 -6.06 12.04 -49.99 -0.60 -6.66 16 19 N -0.03 -0.74 13.78 37.02 0.51 -0.23 16 20 N -0.31 -5.43 4.03 -355.09 -1.43 -6.86 16 21 C 0.05 0.28 11.25 127.77 1.44 1.72 16 22 C 0.00 0.10 6.46 41.71 0.27 0.37 16 23 C 0.55 12.30 3.24 71.24 0.23 12.53 16 24 F -0.16 -2.48 14.67 44.97 0.66 -1.82 16 25 F -0.14 -4.16 13.42 44.97 0.60 -3.56 16 26 F -0.16 -3.53 17.30 44.97 0.78 -2.75 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.56 6.64 -2.39 -0.02 1.54 16 30 H 0.04 1.56 8.08 -2.38 -0.02 1.54 16 31 H 0.05 1.91 7.83 -2.39 -0.02 1.90 16 32 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.07 3.70 5.52 -2.39 -0.01 3.69 16 34 H 0.04 1.85 7.86 -2.39 -0.02 1.83 16 35 H 0.06 2.42 6.64 -2.39 -0.02 2.40 16 36 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 13.50 8.16 -92.71 -0.76 12.74 16 38 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.12 0.46 5.68 -2.39 -0.01 0.45 16 Total: -1.00 -67.56 350.21 5.19 -62.36 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.36 Total: 10.40 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 6.39 Total: 33.56 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -5.57 Total: -123.29 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 2.04 Total: -8.12 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.56 5.19 -62.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481003542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.154 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds