Wall clock time and date at job start Tue Mar 31 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35514 * 116.99945 * 2 1 4 4 C 1.39358 * 120.02679 * 179.97438 * 3 2 1 5 5 C 1.38417 * 118.03331 * 179.97438 * 4 3 2 6 6 C 1.39979 * 117.96816 * 0.02562 * 5 4 3 7 7 C 1.47941 * 120.11184 * 179.97438 * 6 5 4 8 8 O 1.21546 * 120.00554 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99853 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00005 * 180.02562 * 9 7 6 11 11 C 1.53936 * 113.83039 * 106.32600 * 10 9 7 12 12 N 1.47963 * 86.18081 * 90.64735 * 11 10 9 13 13 C 1.46905 * 110.99442 * 137.58205 * 12 11 10 14 14 C 1.50701 * 109.47159 * 70.64116 * 13 12 11 15 15 O 1.21289 * 119.99845 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99976 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00115 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00206 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00229 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99997 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46730 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47444 * 119.99334 * 21 19 17 24 24 H 1.48500 * 109.46884 * 239.99495 * 21 19 17 25 25 C 1.47962 * 90.76258 * 24.69072 * 12 11 10 26 26 N 1.32737 * 119.77060 * 0.24728 * 6 5 4 27 27 N 1.28350 * 122.08766 * 359.47012 * 26 6 5 28 28 H 1.09011 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47568 * 299.99730 * 1 2 3 30 30 H 1.08996 * 109.47338 * 60.00050 * 1 2 3 31 31 H 1.07996 * 120.98587 * 359.95664 * 4 3 2 32 32 H 1.08006 * 121.01379 * 180.02562 * 5 4 3 33 33 H 0.97002 * 120.00027 * 359.97438 * 9 7 6 34 34 H 1.09002 * 112.93917 * 334.66429 * 10 9 7 35 35 H 1.09003 * 113.75649 * 204.96870 * 11 10 9 36 36 H 1.09007 * 113.75829 * 336.32990 * 11 10 9 37 37 H 1.08998 * 109.46445 * 190.64141 * 13 12 11 38 38 H 1.09000 * 109.47062 * 310.63837 * 13 12 11 39 39 H 0.97005 * 119.99820 * 0.02562 * 16 14 13 40 40 H 0.96991 * 120.00444 * 180.02562 * 20 19 17 41 41 H 1.08991 * 113.75516 * 220.99362 * 25 12 11 42 42 H 1.08998 * 113.86153 * 89.63735 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4358 1.2810 0.0005 5 6 4.0209 2.5355 0.0000 6 6 3.1780 3.6530 -0.0006 7 6 3.7527 5.0162 -0.0006 8 8 4.9588 5.1673 -0.0007 9 7 2.9390 6.0906 -0.0016 10 6 3.5081 7.4405 -0.0022 11 6 3.3856 8.1666 -1.3541 12 7 2.0955 8.6841 -0.8470 13 6 1.9315 10.1056 -1.1792 14 6 1.7054 10.2522 -2.6619 15 8 1.6835 9.2693 -3.3721 16 7 1.5275 11.4756 -3.1987 17 6 1.3213 11.6089 -4.5475 18 1 1.3010 10.7336 -5.1798 19 6 1.1385 12.8702 -5.1010 20 7 1.1627 13.9353 -4.3316 21 14 0.8568 13.0519 -6.9387 22 1 0.8736 11.7111 -7.5769 23 1 -0.4593 13.6971 -7.1764 24 1 1.9327 13.8918 -7.5237 25 6 2.5541 8.5153 0.5496 26 7 1.8612 3.4854 0.0045 27 7 1.3222 2.3206 -0.0002 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 4.0399 0.3859 0.0017 32 1 5.0950 2.6485 -0.0001 33 1 1.9765 5.9701 -0.0027 34 1 4.5090 7.4798 0.4277 35 1 4.1390 8.9392 -1.5075 36 1 3.2847 7.4942 -2.2061 37 1 1.0745 10.5083 -0.6393 38 1 2.8304 10.6517 -0.8929 39 1 1.5454 12.2617 -2.6307 40 1 1.0347 14.8157 -4.7179 41 1 1.7890 8.1217 1.2185 42 1 3.0644 9.3892 0.9547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481592764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:56 Heat of formation + Delta-G solvation = 1.287283 kcal Electronic energy + Delta-G solvation = -27446.759447 eV Core-core repulsion = 23236.821190 eV Total energy + Delta-G solvation = -4209.938257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76545 -40.48061 -39.32039 -38.55721 -37.61174 -34.26181 -33.83735 -33.60093 -32.26316 -31.24449 -29.66782 -28.09079 -26.10515 -25.98961 -25.28964 -24.39000 -23.47707 -21.63491 -19.87716 -19.29080 -19.12601 -18.49779 -17.93853 -17.82249 -16.82619 -16.34444 -16.08785 -15.47675 -15.43972 -15.17842 -14.97579 -14.79543 -14.59156 -14.47355 -14.18550 -13.87606 -13.70845 -13.31666 -13.02454 -12.55872 -12.54403 -12.35649 -12.04985 -11.97862 -11.56055 -11.48465 -11.20002 -11.05791 -10.79169 -10.76505 -10.34757 -10.32895 -10.21031 -10.18144 -9.65308 -9.50632 -9.14943 -8.66041 -8.21846 -7.95191 -6.40912 -3.81496 0.11344 0.27515 2.32796 2.34134 2.76677 3.17009 3.26595 3.27517 3.34973 3.49241 3.79256 3.90068 4.00507 4.20900 4.25929 4.38832 4.48117 4.52310 4.75387 4.84062 4.89099 4.96051 5.01268 5.16371 5.23394 5.26237 5.39582 5.46837 5.53677 5.63987 5.69168 5.73256 5.86786 6.14383 6.26634 6.43445 6.44261 6.61651 7.14545 7.32105 7.56354 7.90900 8.06966 8.07398 8.62439 9.19203 9.55285 10.07100 10.76970 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.002033 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.768566 B =13771.529793 C =14627.265708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.296 6.296 3 C 0.278 3.722 4 C -0.140 4.140 5 C -0.030 4.030 6 C -0.006 4.006 7 C 0.583 3.417 8 O -0.532 6.532 9 N -0.678 5.678 10 C 0.110 3.890 11 C 0.011 3.989 12 N -0.453 5.453 13 C 0.009 3.991 14 C 0.444 3.556 15 O -0.578 6.578 16 N -0.565 5.565 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.008 4.008 26 N -0.164 5.164 27 N -0.296 5.296 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.165 0.835 32 H 0.171 0.829 33 H 0.418 0.582 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.094 0.906 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -22.403 14.645 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.200 6.200 3 C 0.094 3.906 4 C -0.170 4.170 5 C -0.059 4.059 6 C -0.155 4.155 7 C 0.366 3.634 8 O -0.408 6.408 9 N -0.329 5.329 10 C 0.004 3.996 11 C -0.119 4.119 12 N -0.175 5.175 13 C -0.123 4.123 14 C 0.229 3.771 15 O -0.462 6.462 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.137 4.137 26 N -0.013 5.013 27 N -0.155 5.155 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.182 0.818 32 H 0.188 0.812 33 H 0.256 0.744 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.466 -22.672 13.885 26.700 hybrid contribution 1.104 0.654 -0.419 1.349 sum 3.569 -22.018 13.466 26.056 Atomic orbital electron populations 1.23104 0.75943 1.03924 1.03378 1.86216 1.23926 1.23141 1.86692 1.21702 0.91086 0.87243 0.90575 1.21548 0.92205 0.99953 1.03251 1.22309 1.03070 0.90011 0.90475 1.22670 0.92076 0.96119 1.04616 1.17380 0.86143 0.82946 0.76899 1.90811 1.13707 1.85784 1.50488 1.45410 1.11095 1.04301 1.72055 1.22491 0.98075 0.81076 0.97937 1.24277 0.91110 0.98702 0.97790 1.68469 1.30154 1.15618 1.03295 1.22468 1.01874 0.90650 0.97277 1.19691 0.84613 0.84313 0.88504 1.90530 1.55882 1.37751 1.62015 1.41875 1.62963 1.06427 1.08947 1.19740 1.45587 0.94093 0.83239 0.87918 1.25263 0.97486 0.94889 1.00403 1.69617 1.50301 0.98523 1.35938 0.85803 0.77803 0.78529 0.82235 1.19243 1.20744 1.20783 1.24403 0.97772 0.97645 0.93930 1.73020 1.09985 1.14123 1.04138 1.73226 1.31136 0.93955 1.17158 0.87801 0.91538 0.91420 0.81779 0.81152 0.74426 0.87533 0.90480 0.88443 0.89053 0.92614 0.77509 0.91950 0.88780 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.39 101.05 1.05 1.23 16 2 O -0.30 -2.40 10.48 -18.24 -0.19 -2.59 16 3 C 0.28 2.60 7.58 -16.77 -0.13 2.48 16 4 C -0.14 -1.03 10.14 -39.10 -0.40 -1.43 16 5 C -0.03 -0.26 9.72 -38.86 -0.38 -0.64 16 6 C -0.01 -0.07 6.83 -82.85 -0.57 -0.63 16 7 C 0.58 7.45 7.81 -12.28 -0.10 7.36 16 8 O -0.53 -7.83 16.01 5.33 0.09 -7.75 16 9 N -0.68 -8.43 5.37 -55.85 -0.30 -8.73 16 10 C 0.11 1.37 4.40 -69.62 -0.31 1.07 16 11 C 0.01 0.17 6.56 -2.76 -0.02 0.16 16 12 N -0.45 -7.29 5.95 -239.87 -1.43 -8.72 16 13 C 0.01 0.16 5.31 -4.97 -0.03 0.14 16 14 C 0.44 10.52 7.59 -10.99 -0.08 10.44 16 15 O -0.58 -15.81 15.12 5.55 0.08 -15.73 16 16 N -0.57 -14.40 5.29 -10.97 -0.06 -14.46 16 17 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 20 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 21 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.01 -0.09 7.71 -2.76 -0.02 -0.11 16 26 N -0.16 -1.99 10.73 33.32 0.36 -1.64 16 27 N -0.30 -3.38 10.40 30.55 0.32 -3.06 16 28 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 30 H 0.07 0.43 8.11 -51.93 -0.42 0.00 16 31 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.17 1.14 7.71 -52.48 -0.40 0.74 16 33 H 0.42 5.11 8.09 -40.82 -0.33 4.77 16 34 H 0.11 1.26 7.51 -51.93 -0.39 0.87 16 35 H 0.08 1.18 7.78 -51.93 -0.40 0.78 16 36 H 0.10 1.80 8.09 -51.93 -0.42 1.38 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 39 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.81 7.80 -51.93 -0.40 0.41 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -34.61 369.22 -6.19 -40.80 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.12 Total: 11.99 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -1.21 Total: 12.04 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.38 Total: -60.56 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.02 Total: -26.07 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.61 -6.19 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481592764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.088 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds