Wall clock time and date at job start Tue Mar 31 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35514 * 116.99945 * 2 1 4 4 C 1.39358 * 120.02679 * 179.97438 * 3 2 1 5 5 C 1.38417 * 118.03331 * 179.97438 * 4 3 2 6 6 C 1.39979 * 117.96816 * 0.02562 * 5 4 3 7 7 C 1.47941 * 120.11184 * 179.97438 * 6 5 4 8 8 O 1.21546 * 120.00554 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99853 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00005 * 180.02562 * 9 7 6 11 11 C 1.53936 * 113.83039 * 106.32600 * 10 9 7 12 12 N 1.47963 * 86.18081 * 90.64735 * 11 10 9 13 13 C 1.46905 * 110.99442 * 137.58205 * 12 11 10 14 14 C 1.50701 * 109.47159 * 70.64116 * 13 12 11 15 15 O 1.21289 * 119.99845 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99976 * 179.97438 * 14 13 12 17 17 C 1.37091 * 120.00115 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00206 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00229 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99997 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46730 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47444 * 119.99334 * 21 19 17 24 24 H 1.48500 * 109.46884 * 239.99495 * 21 19 17 25 25 C 1.47962 * 90.76258 * 24.69072 * 12 11 10 26 26 N 1.32737 * 119.77060 * 0.24728 * 6 5 4 27 27 N 1.28350 * 122.08766 * 359.47012 * 26 6 5 28 28 H 1.09011 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47568 * 299.99730 * 1 2 3 30 30 H 1.08996 * 109.47338 * 60.00050 * 1 2 3 31 31 H 1.07996 * 120.98587 * 359.95664 * 4 3 2 32 32 H 1.08006 * 121.01379 * 180.02562 * 5 4 3 33 33 H 0.97002 * 120.00027 * 359.97438 * 9 7 6 34 34 H 1.09002 * 112.93917 * 334.66429 * 10 9 7 35 35 H 1.09003 * 113.75649 * 204.96870 * 11 10 9 36 36 H 1.09007 * 113.75829 * 336.32990 * 11 10 9 37 37 H 1.08998 * 109.46445 * 190.64141 * 13 12 11 38 38 H 1.09000 * 109.47062 * 310.63837 * 13 12 11 39 39 H 0.97005 * 119.99820 * 0.02562 * 16 14 13 40 40 H 0.96991 * 120.00444 * 180.02562 * 20 19 17 41 41 H 1.08991 * 113.75516 * 220.99362 * 25 12 11 42 42 H 1.08998 * 113.86153 * 89.63735 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4358 1.2810 0.0005 5 6 4.0209 2.5355 0.0000 6 6 3.1780 3.6530 -0.0006 7 6 3.7527 5.0162 -0.0006 8 8 4.9588 5.1673 -0.0007 9 7 2.9390 6.0906 -0.0016 10 6 3.5081 7.4405 -0.0022 11 6 3.3856 8.1666 -1.3541 12 7 2.0955 8.6841 -0.8470 13 6 1.9315 10.1056 -1.1792 14 6 1.7054 10.2522 -2.6619 15 8 1.6835 9.2693 -3.3721 16 7 1.5275 11.4756 -3.1987 17 6 1.3213 11.6089 -4.5475 18 1 1.3010 10.7336 -5.1798 19 6 1.1385 12.8702 -5.1010 20 7 1.1627 13.9353 -4.3316 21 14 0.8568 13.0519 -6.9387 22 1 0.8736 11.7111 -7.5769 23 1 -0.4593 13.6971 -7.1764 24 1 1.9327 13.8918 -7.5237 25 6 2.5541 8.5153 0.5496 26 7 1.8612 3.4854 0.0045 27 7 1.3222 2.3206 -0.0002 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 4.0399 0.3859 0.0017 32 1 5.0950 2.6485 -0.0001 33 1 1.9765 5.9701 -0.0027 34 1 4.5090 7.4798 0.4277 35 1 4.1390 8.9392 -1.5075 36 1 3.2847 7.4942 -2.2061 37 1 1.0745 10.5083 -0.6393 38 1 2.8304 10.6517 -0.8929 39 1 1.5454 12.2617 -2.6307 40 1 1.0347 14.8157 -4.7179 41 1 1.7890 8.1217 1.2185 42 1 3.0644 9.3892 0.9547 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481592764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:55 Heat of formation + Delta-G solvation = -30.469502 kcal Electronic energy + Delta-G solvation = -27448.136524 eV Core-core repulsion = 23236.821190 eV Total energy + Delta-G solvation = -4211.315334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52854 -41.58467 -40.38065 -39.56774 -39.14437 -35.98046 -35.16100 -34.37984 -33.32201 -33.03856 -30.98697 -28.65542 -27.49035 -27.09354 -26.53299 -25.28376 -24.75871 -22.57582 -21.26037 -20.70716 -19.98861 -19.85066 -19.28669 -18.67479 -17.82940 -17.51390 -17.37150 -16.75113 -16.56857 -16.46744 -16.15343 -15.86802 -15.65352 -15.51976 -15.28028 -15.09022 -14.84471 -14.75684 -14.30771 -13.75248 -13.59018 -13.43460 -13.27438 -13.01814 -12.92035 -12.68304 -12.64378 -12.45036 -12.33183 -12.14547 -11.91074 -11.51567 -11.48302 -11.34977 -10.92556 -10.41369 -10.33622 -10.16518 -10.01659 -9.66544 -8.47757 -5.96093 -0.66066 -0.40110 1.35052 1.40112 1.44644 1.54229 1.68377 1.88596 2.05314 2.27953 2.44508 2.71083 2.83508 3.08946 3.18877 3.24708 3.52152 3.59909 3.73703 3.79796 3.80965 4.23109 4.24839 4.30517 4.36635 4.39657 4.47881 4.49900 4.56548 4.63023 4.69604 4.73211 4.78415 4.87357 4.89494 5.35924 5.39768 5.42274 5.81471 5.86436 6.05892 6.32709 6.59914 6.92827 7.12513 7.28905 7.56005 8.12453 8.69880 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.002033 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.768566 B =13771.529793 C =14627.265708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.296 6.296 3 C 0.271 3.729 4 C -0.123 4.123 5 C -0.030 4.030 6 C -0.020 4.020 7 C 0.584 3.416 8 O -0.555 6.555 9 N -0.679 5.679 10 C 0.122 3.878 11 C 0.003 3.997 12 N -0.479 5.479 13 C 0.022 3.978 14 C 0.439 3.561 15 O -0.621 6.621 16 N -0.575 5.575 17 C -0.331 4.331 18 H 0.075 0.925 19 C -0.014 4.014 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.270 1.270 25 C 0.009 3.991 26 N -0.187 5.187 27 N -0.319 5.319 28 H 0.134 0.866 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.190 0.810 33 H 0.419 0.581 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.112 0.888 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 -23.062 15.961 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.200 6.200 3 C 0.087 3.913 4 C -0.152 4.152 5 C -0.057 4.057 6 C -0.170 4.170 7 C 0.368 3.632 8 O -0.432 6.432 9 N -0.328 5.328 10 C 0.016 3.984 11 C -0.127 4.127 12 N -0.202 5.202 13 C -0.109 4.109 14 C 0.226 3.774 15 O -0.507 6.507 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.093 0.907 19 C -0.213 4.213 20 N -0.560 5.560 21 Si 0.816 3.184 22 H -0.201 1.201 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.119 4.119 26 N -0.035 5.035 27 N -0.178 5.178 28 H 0.152 0.848 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.219 0.781 32 H 0.207 0.793 33 H 0.256 0.744 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.905 -23.320 15.236 28.007 hybrid contribution 0.932 0.741 -0.814 1.442 sum 3.838 -22.579 14.422 27.066 Atomic orbital electron populations 1.23314 0.74867 1.05781 1.02861 1.86234 1.25018 1.22334 1.86371 1.21999 0.92066 0.87144 0.90138 1.21942 0.91567 1.00773 1.00887 1.22541 1.03709 0.89579 0.89889 1.22611 0.92427 0.96076 1.05866 1.17602 0.85865 0.83573 0.76136 1.90788 1.14504 1.86249 1.51664 1.45459 1.11146 1.04445 1.71762 1.22406 0.99125 0.81214 0.95679 1.24231 0.91345 0.98868 0.98236 1.68454 1.30816 1.14611 1.06369 1.22381 1.03991 0.92305 0.92255 1.20849 0.82338 0.83002 0.91171 1.90503 1.57162 1.38998 1.64021 1.41943 1.63666 1.07332 1.08283 1.19647 1.48032 0.93841 0.84586 0.90684 1.26021 0.96572 0.94178 1.04554 1.69668 1.49980 0.98902 1.37496 0.84890 0.78377 0.78110 0.77066 1.20076 1.19504 1.19483 1.24493 0.97852 0.98007 0.91592 1.72944 1.10539 1.14818 1.05193 1.73123 1.31957 0.94400 1.18327 0.84772 0.91769 0.92245 0.78051 0.79311 0.74384 0.86346 0.90287 0.92288 0.86931 0.89831 0.76932 0.91293 0.86939 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.39 113.37 1.18 1.45 16 2 O -0.30 -4.35 10.48 -88.17 -0.92 -5.28 16 3 C 0.27 4.77 7.58 84.84 0.64 5.42 16 4 C -0.12 -1.54 10.14 22.58 0.23 -1.31 16 5 C -0.03 -0.46 9.72 22.73 0.22 -0.24 16 6 C -0.02 -0.45 6.83 42.00 0.29 -0.17 16 7 C 0.58 14.90 7.81 86.81 0.68 15.57 16 8 O -0.55 -16.14 16.01 -3.86 -0.06 -16.20 16 9 N -0.68 -16.75 5.37 -448.89 -2.41 -19.16 16 10 C 0.12 2.91 4.40 46.56 0.20 3.11 16 11 C 0.00 0.11 6.56 86.41 0.57 0.68 16 12 N -0.48 -15.02 5.95 -912.82 -5.43 -20.45 16 13 C 0.02 0.74 5.31 85.56 0.45 1.20 16 14 C 0.44 21.18 7.59 87.66 0.67 21.85 16 15 O -0.62 -35.31 15.12 -3.06 -0.05 -35.36 16 16 N -0.57 -29.83 5.29 -306.99 -1.62 -31.45 16 17 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 20 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 21 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 C 0.01 0.19 7.71 86.41 0.67 0.85 16 26 N -0.19 -4.59 10.73 -48.51 -0.52 -5.12 16 27 N -0.32 -7.28 10.40 -170.01 -1.77 -9.05 16 28 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.71 8.11 -2.39 -0.02 0.69 16 30 H 0.06 0.73 8.11 -2.39 -0.02 0.71 16 31 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 32 H 0.19 2.18 7.71 -2.91 -0.02 2.16 16 33 H 0.42 10.29 8.09 -92.71 -0.75 9.54 16 34 H 0.12 2.60 7.51 -2.39 -0.02 2.58 16 35 H 0.08 2.43 7.78 -2.39 -0.02 2.41 16 36 H 0.06 2.31 8.09 -2.38 -0.02 2.29 16 37 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.08 2.36 7.69 -2.39 -0.02 2.34 16 39 H 0.40 19.39 7.90 -92.70 -0.73 18.66 16 40 H 0.28 14.06 8.31 -92.72 -0.77 13.29 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.11 1.71 7.80 -2.39 -0.02 1.70 16 Total: -1.00 -77.64 369.22 -3.79 -81.43 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.39 Total: 34.78 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 7.07 Total: 29.80 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -11.47 Total: -134.88 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -1.03 Total: -56.84 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -77.64 -3.79 -81.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481592764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.959 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds