Wall clock time and date at job start Tue Mar 31 2020 18:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21300 * 119.99653 * 2 1 4 4 N 1.34776 * 120.00381 * 180.02562 * 2 1 3 5 5 C 1.40056 * 120.00204 * 184.73357 * 4 2 1 6 6 C 1.39043 * 119.95994 * 324.33631 * 5 4 2 7 7 C 1.38114 * 120.26437 * 179.97438 * 6 5 4 8 8 C 1.38336 * 120.19879 * 359.97438 * 7 6 5 9 9 F 1.35103 * 120.03666 * 179.97438 * 8 7 6 10 10 C 1.39806 * 119.91972 * 359.97438 * 8 7 6 11 11 C 1.47710 * 120.13030 * 180.02562 * 10 8 7 12 12 O 1.21569 * 120.00047 * 5.78068 * 11 10 8 13 13 N 1.34774 * 120.00053 * 185.78314 * 11 10 8 14 14 C 1.46502 * 120.00401 * 184.95776 * 13 11 10 15 15 C 1.53000 * 109.47063 * 184.81011 * 14 13 11 16 16 N 1.46498 * 115.55352 * 85.93285 * 15 14 13 17 17 C 1.36934 * 119.99957 * 55.38112 * 16 15 14 18 18 H 1.07999 * 120.00235 * 355.52771 * 17 16 15 19 19 C 1.38814 * 119.99886 * 175.52908 * 17 16 15 20 20 N 1.31621 * 119.99923 * 5.10246 * 19 17 16 21 21 Si 1.86800 * 120.00253 * 185.10357 * 19 17 16 22 22 H 1.48506 * 109.47004 * 354.99711 * 21 19 17 23 23 H 1.48498 * 109.47492 * 114.99629 * 21 19 17 24 24 H 1.48498 * 109.47432 * 235.00099 * 21 19 17 25 25 C 1.53005 * 117.49400 * 231.59903 * 15 14 13 26 26 C 1.52999 * 117.49595 * 300.25381 * 15 14 13 27 27 C 1.38488 * 119.96300 * 144.56670 * 5 4 2 28 28 H 1.09003 * 109.46795 * 239.99970 * 1 2 3 29 29 H 1.09000 * 109.47345 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47255 * 119.99940 * 1 2 3 31 31 H 0.97001 * 119.99345 * 4.72860 * 4 2 1 32 32 H 1.07992 * 119.86553 * 359.97438 * 6 5 4 33 33 H 1.08005 * 119.89936 * 179.97438 * 7 6 5 34 34 H 0.97012 * 119.99951 * 4.95619 * 13 11 10 35 35 H 1.08996 * 109.46903 * 64.80212 * 14 13 11 36 36 H 1.09002 * 109.46300 * 304.80542 * 14 13 11 37 37 H 0.97001 * 119.99648 * 235.66055 * 16 15 14 38 38 H 0.97000 * 119.99955 * 180.02562 * 20 19 17 39 39 H 1.09001 * 117.49638 * 215.00659 * 25 15 14 40 40 H 1.08998 * 117.49843 * 0.02562 * 25 15 14 41 41 H 1.08994 * 117.50369 * 359.97438 * 26 15 14 42 42 H 1.09006 * 117.49417 * 144.98221 * 26 15 14 43 43 H 1.08000 * 120.09464 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.5779 -1.1692 0.0996 6 6 4.3192 -0.1631 -0.5099 7 6 5.6971 -0.1587 -0.4148 8 6 6.3492 -1.1557 0.2884 9 9 7.6972 -1.1485 0.3790 10 6 5.6117 -2.1706 0.9053 11 6 6.3032 -3.2371 1.6578 12 8 7.5049 -3.1774 1.8312 13 7 5.6018 -4.2764 2.1521 14 6 6.2673 -5.2770 2.9900 15 6 5.2847 -6.4032 3.3172 16 7 5.1968 -7.4743 2.3216 17 6 6.3263 -8.1467 1.9378 18 1 7.2912 -7.8404 2.3140 19 6 6.2311 -9.2220 1.0652 20 7 5.0703 -9.5329 0.5281 21 14 7.7502 -10.2280 0.6531 22 1 8.9418 -9.6063 1.2847 23 1 7.5825 -11.6111 1.1669 24 1 7.9341 -10.2661 -0.8200 25 6 5.1186 -6.7906 4.7881 26 6 4.0046 -6.0282 4.0664 27 6 4.2196 -2.1760 0.8014 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6984 -2.0057 -0.0702 32 1 3.8156 0.6180 -1.0599 33 1 6.2671 0.6255 -0.8909 34 1 4.6561 -4.3618 1.9532 35 1 6.6055 -4.8096 3.9147 36 1 7.1244 -5.6865 2.4552 37 1 4.3392 -7.7044 1.9313 38 1 5.0037 -10.2845 -0.0815 39 1 4.9440 -7.8423 5.0149 40 1 5.7090 -6.2428 5.5225 41 1 3.8625 -4.9794 4.3266 42 1 3.0968 -6.5783 3.8182 43 1 3.6443 -2.9599 1.2714 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483796067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:26 Heat of formation + Delta-G solvation = -44.766185 kcal Electronic energy + Delta-G solvation = -28251.461867 eV Core-core repulsion = 24019.606621 eV Total energy + Delta-G solvation = -4231.855247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.81040 -40.90991 -39.68328 -38.26639 -37.42936 -35.00421 -33.91701 -33.08079 -31.61938 -31.08506 -29.76889 -28.60259 -26.77759 -24.21492 -23.92773 -22.81840 -22.05186 -21.39804 -20.12833 -19.38765 -18.25842 -17.66507 -17.60378 -17.19407 -16.48419 -16.31415 -15.77205 -15.60377 -15.43374 -14.95950 -14.72014 -14.50849 -14.30499 -14.17192 -13.80972 -13.54956 -13.37314 -13.16928 -13.07295 -12.91878 -12.85163 -12.49747 -12.12974 -11.98025 -11.66868 -11.04667 -11.01318 -10.96072 -10.61209 -10.42441 -10.32902 -10.23956 -9.78803 -9.74645 -9.43897 -9.39019 -8.89527 -8.68715 -8.36534 -7.09173 -5.88448 -3.17923 0.55820 0.80315 2.08724 2.58414 2.86737 3.27552 3.39757 3.46948 3.48926 3.60933 4.06850 4.22683 4.34960 4.45023 4.51828 4.59171 4.75317 4.86079 4.93155 4.98278 5.08340 5.15696 5.22985 5.37249 5.42634 5.44874 5.57251 5.74103 5.74691 5.82597 5.89290 5.99885 6.02668 6.19430 6.38025 6.49122 6.57159 6.61542 6.70427 6.76393 6.90448 7.63654 7.66905 7.73726 8.29567 8.41253 9.41704 9.93502 10.28608 11.33536 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.002983 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.038627 B = 9384.362518 C =10130.954693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.512 3.488 3 O -0.528 6.528 4 N -0.672 5.672 5 C 0.122 3.878 6 C -0.069 4.069 7 C -0.147 4.147 8 C 0.147 3.853 9 F -0.114 7.114 10 C -0.146 4.146 11 C 0.553 3.447 12 O -0.527 6.527 13 N -0.705 5.705 14 C 0.147 3.853 15 C 0.133 3.867 16 N -0.687 5.687 17 C -0.240 4.240 18 H 0.075 0.925 19 C -0.008 4.008 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C -0.194 4.194 26 C -0.191 4.191 27 C -0.081 4.081 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.416 0.584 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.397 0.603 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.388 0.612 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 18.750 -0.188 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.301 3.699 3 O -0.404 6.404 4 N -0.319 5.319 5 C 0.028 3.972 6 C -0.089 4.089 7 C -0.167 4.167 8 C 0.125 3.875 9 F -0.092 7.092 10 C -0.151 4.151 11 C 0.339 3.661 12 O -0.405 6.405 13 N -0.355 5.355 14 C 0.022 3.978 15 C 0.039 3.961 16 N -0.326 5.326 17 C -0.370 4.370 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.235 4.235 26 C -0.229 4.229 27 C -0.102 4.102 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.252 0.748 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.233 0.767 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.223 0.777 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.880 19.435 -0.085 21.802 hybrid contribution -0.085 -1.341 -0.479 1.427 sum -9.965 18.093 -0.564 20.664 Atomic orbital electron populations 1.21934 0.90352 1.06117 1.04872 1.21068 0.91031 0.82971 0.74879 1.90739 1.70528 1.31295 1.47823 1.43579 1.04748 1.10356 1.73202 1.17548 0.83061 0.97462 0.99154 1.21259 0.92515 0.98273 0.96903 1.21061 0.94773 0.99190 1.01628 1.17701 0.77751 0.94729 0.97280 1.91602 1.27903 1.95840 1.93852 1.19931 0.93463 0.97808 1.03860 1.17891 0.86843 0.81852 0.79561 1.90835 1.13527 1.77730 1.58367 1.45798 1.13306 1.24629 1.51788 1.21271 0.96150 0.86792 0.93551 1.20138 0.95545 0.91601 0.88815 1.41822 1.08716 1.37025 1.45024 1.19214 0.87326 1.08243 1.22264 0.90756 1.24751 0.96959 0.98998 0.99740 1.69672 1.23175 1.30616 1.34359 0.86119 0.82246 0.80211 0.77672 1.20296 1.21725 1.21827 1.23474 1.02009 1.00685 0.97348 1.23086 0.93574 1.00077 1.06157 1.20958 0.92801 0.99069 0.97408 0.88799 0.88489 0.88850 0.74759 0.83163 0.83653 0.76748 0.92139 0.89625 0.77723 0.93444 0.88676 0.89903 0.89456 0.89004 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.32 36.01 0.37 -0.22 16 2 C 0.51 3.91 7.78 -10.99 -0.09 3.83 16 3 O -0.53 -6.20 14.55 5.54 0.08 -6.12 16 4 N -0.67 -4.62 5.34 -9.88 -0.05 -4.67 16 5 C 0.12 1.20 6.28 -83.71 -0.53 0.67 16 6 C -0.07 -0.74 8.69 -39.33 -0.34 -1.08 16 7 C -0.15 -1.64 10.01 -39.59 -0.40 -2.04 16 8 C 0.15 2.06 7.28 -38.96 -0.28 1.78 16 9 F -0.11 -1.88 15.56 2.25 0.04 -1.84 16 10 C -0.15 -2.05 5.88 -104.94 -0.62 -2.66 16 11 C 0.55 9.50 7.75 -12.39 -0.10 9.40 16 12 O -0.53 -11.10 15.33 5.31 0.08 -11.02 16 13 N -0.70 -11.14 5.41 -61.29 -0.33 -11.47 16 14 C 0.15 2.66 5.75 -4.04 -0.02 2.63 16 15 C 0.13 2.45 2.34 -131.82 -0.31 2.14 16 16 N -0.69 -16.04 5.54 -47.23 -0.26 -16.31 16 17 C -0.24 -6.39 9.39 -15.06 -0.14 -6.54 16 18 H 0.07 1.98 7.23 -52.49 -0.38 1.60 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -26.98 13.07 55.49 0.73 -26.25 16 21 Si 0.91 22.20 29.56 -169.99 -5.02 17.17 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 C -0.19 -3.20 10.11 -26.69 -0.27 -3.47 16 26 C -0.19 -2.80 9.79 -26.69 -0.26 -3.06 16 27 C -0.08 -0.86 9.43 -38.98 -0.37 -1.23 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.42 1.56 8.82 -40.82 -0.36 1.20 16 32 H 0.15 1.56 6.25 -52.49 -0.33 1.23 16 33 H 0.15 1.29 8.06 -52.48 -0.42 0.86 16 34 H 0.40 5.29 6.32 -40.81 -0.26 5.03 16 35 H 0.06 1.02 7.90 -51.93 -0.41 0.61 16 36 H 0.09 1.85 6.97 -51.93 -0.36 1.48 16 37 H 0.39 9.56 8.02 -40.82 -0.33 9.23 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 40 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.14 1.16 6.48 -52.49 -0.34 0.82 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -35.00 373.22 -7.84 -42.84 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.28 Total: 12.22 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -3.44 Total: -0.16 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.08 Total: -58.70 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.16 Total: -17.15 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.00 -7.84 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483796067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.927 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds