Wall clock time and date at job start Tue Mar 31 2020 18:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21300 * 119.99653 * 2 1 4 4 N 1.34776 * 120.00381 * 180.02562 * 2 1 3 5 5 C 1.40056 * 120.00204 * 184.73357 * 4 2 1 6 6 C 1.39043 * 119.95994 * 324.33631 * 5 4 2 7 7 C 1.38114 * 120.26437 * 179.97438 * 6 5 4 8 8 C 1.38336 * 120.19879 * 359.97438 * 7 6 5 9 9 F 1.35103 * 120.03666 * 179.97438 * 8 7 6 10 10 C 1.39806 * 119.91972 * 359.97438 * 8 7 6 11 11 C 1.47710 * 120.13030 * 180.02562 * 10 8 7 12 12 O 1.21569 * 120.00047 * 5.78068 * 11 10 8 13 13 N 1.34774 * 120.00053 * 185.78314 * 11 10 8 14 14 C 1.46502 * 120.00401 * 184.95776 * 13 11 10 15 15 C 1.53000 * 109.47063 * 184.81011 * 14 13 11 16 16 N 1.46498 * 115.55352 * 85.93285 * 15 14 13 17 17 C 1.36934 * 119.99957 * 55.38112 * 16 15 14 18 18 H 1.07999 * 120.00235 * 355.52771 * 17 16 15 19 19 C 1.38814 * 119.99886 * 175.52908 * 17 16 15 20 20 N 1.31621 * 119.99923 * 5.10246 * 19 17 16 21 21 Si 1.86800 * 120.00253 * 185.10357 * 19 17 16 22 22 H 1.48506 * 109.47004 * 354.99711 * 21 19 17 23 23 H 1.48498 * 109.47492 * 114.99629 * 21 19 17 24 24 H 1.48498 * 109.47432 * 235.00099 * 21 19 17 25 25 C 1.53005 * 117.49400 * 231.59903 * 15 14 13 26 26 C 1.52999 * 117.49595 * 300.25381 * 15 14 13 27 27 C 1.38488 * 119.96300 * 144.56670 * 5 4 2 28 28 H 1.09003 * 109.46795 * 239.99970 * 1 2 3 29 29 H 1.09000 * 109.47345 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47255 * 119.99940 * 1 2 3 31 31 H 0.97001 * 119.99345 * 4.72860 * 4 2 1 32 32 H 1.07992 * 119.86553 * 359.97438 * 6 5 4 33 33 H 1.08005 * 119.89936 * 179.97438 * 7 6 5 34 34 H 0.97012 * 119.99951 * 4.95619 * 13 11 10 35 35 H 1.08996 * 109.46903 * 64.80212 * 14 13 11 36 36 H 1.09002 * 109.46300 * 304.80542 * 14 13 11 37 37 H 0.97001 * 119.99648 * 235.66055 * 16 15 14 38 38 H 0.97000 * 119.99955 * 180.02562 * 20 19 17 39 39 H 1.09001 * 117.49638 * 215.00659 * 25 15 14 40 40 H 1.08998 * 117.49843 * 0.02562 * 25 15 14 41 41 H 1.08994 * 117.50369 * 359.97438 * 26 15 14 42 42 H 1.09006 * 117.49417 * 144.98221 * 26 15 14 43 43 H 1.08000 * 120.09464 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.5779 -1.1692 0.0996 6 6 4.3192 -0.1631 -0.5099 7 6 5.6971 -0.1587 -0.4148 8 6 6.3492 -1.1557 0.2884 9 9 7.6972 -1.1485 0.3790 10 6 5.6117 -2.1706 0.9053 11 6 6.3032 -3.2371 1.6578 12 8 7.5049 -3.1774 1.8312 13 7 5.6018 -4.2764 2.1521 14 6 6.2673 -5.2770 2.9900 15 6 5.2847 -6.4032 3.3172 16 7 5.1968 -7.4743 2.3216 17 6 6.3263 -8.1467 1.9378 18 1 7.2912 -7.8404 2.3140 19 6 6.2311 -9.2220 1.0652 20 7 5.0703 -9.5329 0.5281 21 14 7.7502 -10.2280 0.6531 22 1 8.9418 -9.6063 1.2847 23 1 7.5825 -11.6111 1.1669 24 1 7.9341 -10.2661 -0.8200 25 6 5.1186 -6.7906 4.7881 26 6 4.0046 -6.0282 4.0664 27 6 4.2196 -2.1760 0.8014 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6984 -2.0057 -0.0702 32 1 3.8156 0.6180 -1.0599 33 1 6.2671 0.6255 -0.8909 34 1 4.6561 -4.3618 1.9532 35 1 6.6055 -4.8096 3.9147 36 1 7.1244 -5.6865 2.4552 37 1 4.3392 -7.7044 1.9313 38 1 5.0037 -10.2845 -0.0815 39 1 4.9440 -7.8423 5.0149 40 1 5.7090 -6.2428 5.5225 41 1 3.8625 -4.9794 4.3266 42 1 3.0968 -6.5783 3.8182 43 1 3.6443 -2.9599 1.2714 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483796067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:25 Heat of formation + Delta-G solvation = -70.361078 kcal Electronic energy + Delta-G solvation = -28252.571745 eV Core-core repulsion = 24019.606621 eV Total energy + Delta-G solvation = -4232.965124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.94392 -41.70591 -40.86628 -39.32506 -38.77517 -35.75142 -35.43629 -34.87980 -32.61382 -31.67069 -31.65824 -29.24998 -28.13436 -25.96223 -25.21408 -23.67902 -23.28338 -22.30796 -21.24908 -20.73594 -19.42771 -19.07765 -18.57373 -18.43223 -17.48474 -17.38584 -16.98937 -16.79505 -16.53662 -16.12794 -16.04041 -15.77617 -15.58423 -15.35810 -14.96328 -14.87893 -14.46936 -14.40097 -14.09627 -13.87028 -13.60196 -13.47734 -13.26973 -12.96670 -12.93734 -12.91891 -12.62533 -12.28611 -12.18800 -12.00803 -11.63535 -11.44663 -11.28608 -10.99128 -10.93998 -10.64005 -10.37354 -10.05365 -9.23197 -8.99609 -7.98791 -5.25352 -0.44845 -0.06586 1.43544 1.43746 1.45960 1.54399 1.75496 1.96260 2.06658 2.51338 2.56287 3.06925 3.10678 3.36728 3.47379 3.56281 3.66190 3.81414 3.84886 3.99403 4.06034 4.16969 4.29286 4.32439 4.55941 4.59771 4.72036 4.73640 4.83259 4.85896 4.93908 4.99512 5.00998 5.05254 5.13655 5.19044 5.25452 5.34858 5.43498 5.54791 5.71351 6.25323 6.38919 6.47060 7.09005 7.12201 7.32235 8.04889 8.28474 9.23718 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.002983 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.038627 B = 9384.362518 C =10130.954693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.573 6.573 4 N -0.660 5.660 5 C 0.130 3.870 6 C -0.069 4.069 7 C -0.138 4.138 8 C 0.116 3.884 9 F -0.137 7.137 10 C -0.163 4.163 11 C 0.549 3.451 12 O -0.576 6.576 13 N -0.693 5.693 14 C 0.158 3.842 15 C 0.102 3.898 16 N -0.697 5.697 17 C -0.230 4.230 18 H 0.067 0.933 19 C -0.066 4.066 20 N -0.961 5.961 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.296 1.296 25 C -0.192 4.192 26 C -0.151 4.151 27 C -0.070 4.070 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.433 0.567 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.411 0.589 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.380 0.620 38 H 0.251 0.749 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 19.827 0.440 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.300 3.700 3 O -0.452 6.452 4 N -0.308 5.308 5 C 0.035 3.965 6 C -0.089 4.089 7 C -0.157 4.157 8 C 0.095 3.905 9 F -0.115 7.115 10 C -0.167 4.167 11 C 0.337 3.663 12 O -0.457 6.457 13 N -0.344 5.344 14 C 0.032 3.968 15 C 0.009 3.991 16 N -0.335 5.335 17 C -0.362 4.362 18 H 0.085 0.915 19 C -0.258 4.258 20 N -0.611 5.611 21 Si 0.789 3.211 22 H -0.199 1.199 23 H -0.216 1.216 24 H -0.223 1.223 25 C -0.233 4.233 26 C -0.189 4.189 27 C -0.091 4.091 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.274 0.726 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.249 0.751 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.213 0.787 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.141 0.859 42 H 0.116 0.884 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.638 20.509 0.579 24.097 hybrid contribution 0.668 -1.562 -0.635 1.814 sum -11.970 18.947 -0.056 22.411 Atomic orbital electron populations 1.21970 0.86686 1.06668 1.07026 1.21902 0.92649 0.82155 0.73340 1.90728 1.71679 1.32897 1.49901 1.43596 1.03366 1.11389 1.72439 1.17635 0.84650 0.96473 0.97775 1.21438 0.92270 0.98525 0.96685 1.21229 0.95174 0.98665 1.00630 1.18067 0.77038 0.96214 0.99173 1.91537 1.29629 1.96099 1.94264 1.19779 0.94803 0.97265 1.04870 1.18392 0.86429 0.82385 0.79095 1.90803 1.15724 1.78889 1.60288 1.45666 1.13817 1.23696 1.51176 1.21012 0.94882 0.87152 0.93743 1.20308 0.99126 0.90909 0.88746 1.41839 1.07232 1.38159 1.46284 1.19405 0.88185 1.07721 1.20896 0.91504 1.25367 0.99141 1.00522 1.00812 1.69773 1.24537 1.31240 1.35561 0.85286 0.79902 0.78942 0.76952 1.19909 1.21619 1.22318 1.23469 1.03306 1.00592 0.95924 1.23206 0.91956 1.01848 1.01842 1.21099 0.91344 0.99747 0.96905 0.86607 0.88822 0.86455 0.72635 0.82645 0.81742 0.75082 0.90661 0.94001 0.78688 0.93976 0.90327 0.87717 0.85914 0.88412 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 10.32 71.24 0.74 0.23 16 2 C 0.51 6.29 7.78 87.66 0.68 6.97 16 3 O -0.57 -12.44 14.55 -3.09 -0.04 -12.49 16 4 N -0.66 -6.85 5.34 -303.55 -1.62 -8.47 16 5 C 0.13 2.24 6.28 38.08 0.24 2.48 16 6 C -0.07 -1.35 8.69 22.43 0.19 -1.16 16 7 C -0.14 -2.98 10.01 22.26 0.22 -2.76 16 8 C 0.12 3.31 7.28 22.67 0.17 3.48 16 9 F -0.14 -4.75 15.56 44.97 0.70 -4.05 16 10 C -0.16 -4.49 5.88 -20.07 -0.12 -4.61 16 11 C 0.55 19.03 7.75 86.75 0.67 19.70 16 12 O -0.58 -25.26 15.33 -3.93 -0.06 -25.32 16 13 N -0.69 -21.24 5.41 -466.10 -2.52 -23.77 16 14 C 0.16 5.62 5.75 86.38 0.50 6.12 16 15 C 0.10 3.59 2.34 3.61 0.01 3.60 16 16 N -0.70 -32.47 5.54 -303.35 -1.68 -34.15 16 17 C -0.23 -12.44 9.39 84.03 0.79 -11.65 16 18 H 0.07 3.65 7.23 -2.91 -0.02 3.63 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.96 -56.42 13.07 21.65 0.28 -56.14 16 21 Si 0.96 46.40 29.56 68.60 2.03 48.42 16 22 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 C -0.19 -5.90 10.11 30.62 0.31 -5.59 16 26 C -0.15 -3.87 9.79 30.62 0.30 -3.57 16 27 C -0.07 -1.33 9.43 22.66 0.21 -1.11 16 28 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.09 0.42 8.12 -2.39 -0.02 0.40 16 30 H 0.12 -0.15 8.14 -2.39 -0.02 -0.16 16 31 H 0.43 1.45 8.82 -92.71 -0.82 0.63 16 32 H 0.16 2.98 6.25 -2.91 -0.02 2.96 16 33 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.41 10.00 6.32 -92.70 -0.59 9.42 16 35 H 0.08 2.45 7.90 -2.39 -0.02 2.43 16 36 H 0.04 1.86 6.97 -2.39 -0.02 1.85 16 37 H 0.38 18.66 8.02 -92.71 -0.74 17.91 16 38 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 40 H 0.10 2.76 8.05 -2.39 -0.02 2.74 16 41 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.10 2.47 8.14 -2.38 -0.02 2.46 16 43 H 0.17 2.14 6.48 -2.91 -0.02 2.12 16 Total: -1.00 -79.79 373.22 1.41 -78.38 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -1.05 Total: 28.66 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 5.38 Total: 8.91 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -5.54 Total: -122.53 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.11 Total: -37.80 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.70 Total: -4.05 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -79.79 1.41 -78.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483796067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.023 kcal (2) G-P(sol) polarization free energy of solvation -79.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds