Wall clock time and date at job start Tue Mar 31 2020 18:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 119.99805 * 2 1 4 4 O 1.21569 * 120.00182 * 184.53980 * 3 2 1 5 5 C 1.47728 * 119.99934 * 4.81882 * 3 2 1 6 6 C 1.39649 * 120.11596 * 320.61177 * 5 3 2 7 7 C 1.37834 * 119.87911 * 179.81507 * 6 5 3 8 8 C 1.38666 * 120.11595 * 0.44084 * 7 6 5 9 9 F 1.35095 * 119.87727 * 179.76418 * 8 7 6 10 10 C 1.38650 * 120.23738 * 359.78880 * 8 7 6 11 11 C 1.37832 * 120.12181 * 359.97438 * 10 8 7 12 12 C 1.46499 * 120.00494 * 180.02562 * 2 1 3 13 13 C 1.53936 * 113.73348 * 38.76062 * 12 2 1 14 14 N 1.48177 * 86.10219 * 221.96230 * 13 12 2 15 15 C 1.46905 * 111.07331 * 137.52364 * 14 13 12 16 16 C 1.50695 * 109.47375 * 70.56057 * 15 14 13 17 17 O 1.21293 * 119.99846 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00408 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00166 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99725 * 359.97438 * 19 18 16 21 21 C 1.38943 * 119.99642 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00453 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99665 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46906 * 60.00182 * 23 21 19 25 25 H 1.48501 * 109.47132 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47368 * 300.00036 * 23 21 19 27 27 C 1.47952 * 90.80148 * 24.60263 * 14 13 12 28 28 H 1.08995 * 109.47091 * 85.55186 * 1 2 3 29 29 H 1.09000 * 109.47140 * 205.55143 * 1 2 3 30 30 H 1.08996 * 109.47239 * 325.54698 * 1 2 3 31 31 H 1.07994 * 120.06023 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.94442 * 180.18500 * 7 6 5 33 33 H 1.07997 * 119.93837 * 179.97438 * 10 8 7 34 34 H 1.08006 * 120.06024 * 179.97438 * 11 10 8 35 35 H 1.08999 * 112.94020 * 170.33337 * 12 2 1 36 36 H 1.09006 * 113.75650 * 336.24605 * 13 12 2 37 37 H 1.09000 * 113.75842 * 107.60497 * 13 12 2 38 38 H 1.08997 * 109.47454 * 190.56665 * 15 14 13 39 39 H 1.09003 * 109.46861 * 310.56438 * 15 14 13 40 40 H 0.96999 * 119.99774 * 0.02562 * 18 16 15 41 41 H 0.97000 * 120.00173 * 180.02562 * 22 21 19 42 42 H 1.09004 * 113.75773 * 221.08604 * 27 14 13 43 43 H 1.09000 * 113.76331 * 89.72394 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1690 -0.0833 5 6 1.4041 2.4443 0.1075 6 6 0.1927 2.6146 -0.5662 7 6 -0.4907 3.8068 -0.4594 8 6 0.0271 4.8393 0.3078 9 9 -0.6444 6.0075 0.4052 10 6 1.2318 4.6772 0.9748 11 6 1.9210 3.4874 0.8788 12 6 2.1976 -1.2687 -0.0006 13 6 1.5559 -2.3543 -0.8833 14 7 1.8639 -3.2921 0.2218 15 6 0.7408 -4.2069 0.4669 16 6 0.6273 -5.1808 -0.6774 17 8 1.4057 -5.1194 -1.6056 18 7 -0.3391 -6.1202 -0.6696 19 6 -0.4420 -7.0066 -1.7104 20 1 0.2511 -6.9519 -2.5368 21 6 -1.4387 -7.9747 -1.7024 22 7 -2.2830 -8.0403 -0.6976 23 14 -1.5794 -9.1820 -3.1210 24 1 -0.3213 -9.9632 -3.2327 25 1 -2.7158 -10.1055 -2.8741 26 1 -1.8132 -8.4368 -4.3839 27 6 1.8625 -2.1781 1.1954 28 1 -0.3633 0.0797 -1.0245 29 1 -0.3633 -0.9272 0.4433 30 1 -0.3633 0.8474 0.5814 31 1 -0.2096 1.8124 -1.1669 32 1 -1.4291 3.9386 -0.9775 33 1 1.6309 5.4847 1.5707 34 1 2.8595 3.3624 1.3985 35 1 3.2670 -1.1417 -0.1691 36 1 0.4887 -2.2093 -1.0516 37 1 2.1085 -2.5578 -1.8005 38 1 0.9132 -4.7538 1.3938 39 1 -0.1829 -3.6341 0.5494 40 1 -0.9618 -6.1691 0.0725 41 1 -2.9785 -8.7164 -0.6919 42 1 2.6597 -2.2411 1.9361 43 1 0.8853 -1.9815 1.6364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483849727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:38 Heat of formation + Delta-G solvation = -31.599845 kcal Electronic energy + Delta-G solvation = -27837.584555 eV Core-core repulsion = 23606.300244 eV Total energy + Delta-G solvation = -4231.284311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.40334 -41.08369 -39.79377 -38.35289 -37.64497 -35.30877 -33.92831 -31.78815 -31.45060 -31.21874 -29.75739 -27.45691 -26.10990 -25.70031 -24.38876 -23.50418 -23.02902 -20.70349 -19.35700 -19.20478 -18.12827 -18.00030 -17.76561 -17.05493 -16.57421 -16.16540 -16.09132 -15.79148 -15.44514 -14.97597 -14.85688 -14.60571 -14.19500 -14.05246 -13.92332 -13.79412 -13.38430 -13.25817 -13.08255 -12.99914 -12.68783 -12.59350 -12.31829 -12.09350 -11.82012 -11.54909 -11.47519 -11.12707 -11.03218 -10.65500 -10.46916 -10.25438 -10.19721 -9.66126 -9.53321 -9.21981 -8.88539 -8.75379 -8.29920 -8.00481 -6.45376 -3.86363 0.29780 0.69824 2.32462 2.58687 3.15738 3.17432 3.23501 3.27888 3.69120 3.84110 3.94453 4.07909 4.17822 4.20840 4.33678 4.45669 4.64020 4.71561 4.77798 4.81190 4.92204 5.07640 5.15749 5.22047 5.30909 5.34406 5.38584 5.40629 5.55497 5.59350 5.63046 5.68323 5.73902 5.75743 5.90698 6.10494 6.20120 6.23989 6.30746 6.52552 7.01888 7.12045 7.51550 7.82485 8.01461 8.57107 9.14060 9.49585 10.01205 10.72208 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.002052 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.338017 B =13643.371151 C =14374.745649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.599 5.599 3 C 0.561 3.439 4 O -0.529 6.529 5 C -0.139 4.139 6 C -0.065 4.065 7 C -0.160 4.160 8 C 0.119 3.881 9 F -0.136 7.136 10 C -0.160 4.160 11 C -0.036 4.036 12 C 0.113 3.887 13 C 0.013 3.987 14 N -0.448 5.448 15 C 0.014 3.986 16 C 0.442 3.558 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.013 4.013 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.095 0.905 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 23.990 6.380 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.331 5.331 3 C 0.350 3.650 4 O -0.406 6.406 5 C -0.143 4.143 6 C -0.083 4.083 7 C -0.179 4.179 8 C 0.100 3.900 9 F -0.114 7.114 10 C -0.179 4.179 11 C -0.055 4.055 12 C 0.009 3.991 13 C -0.116 4.116 14 N -0.171 5.171 15 C -0.118 4.118 16 C 0.227 3.773 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.143 4.143 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.044 23.455 5.695 24.223 hybrid contribution -1.708 -0.136 -0.035 1.714 sum 0.336 23.319 5.660 23.998 Atomic orbital electron populations 1.22192 0.79580 1.03889 1.02112 1.47816 1.06981 1.05706 1.72557 1.18265 0.87040 0.83369 0.76346 1.90811 1.13466 1.87110 1.49228 1.19989 0.96548 0.95354 1.02371 1.21577 0.92576 0.97251 0.96896 1.21135 1.02325 0.92926 1.01503 1.17982 0.91681 0.82113 0.98266 1.91528 1.79580 1.45747 1.94571 1.21126 0.94789 0.99454 1.02535 1.21066 0.98748 0.90439 0.95218 1.23328 0.98997 0.80271 0.96508 1.24305 1.00214 0.89403 0.97687 1.68402 1.37306 1.08464 1.02923 1.22444 0.92927 0.96516 0.99953 1.19658 0.84359 0.84635 0.88622 1.90532 1.43969 1.74228 1.37444 1.41861 1.28122 1.28160 1.21883 1.19646 1.14139 1.08598 1.00516 0.87968 1.25260 0.95770 0.98547 0.98329 1.69599 1.18000 1.35764 1.30970 0.85918 0.77833 0.79735 0.80743 1.19844 1.20963 1.19914 1.24514 1.01946 0.91143 0.96704 0.91663 0.90458 0.90221 0.83497 0.83931 0.83975 0.83949 0.85106 0.91034 0.88010 0.88940 0.92940 0.77511 0.91796 0.88677 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 7.56 59.85 0.45 0.94 16 2 N -0.60 -6.28 3.09 -176.44 -0.55 -6.83 16 3 C 0.56 6.53 7.35 -12.38 -0.09 6.44 16 4 O -0.53 -8.04 16.38 5.31 0.09 -7.95 16 5 C -0.14 -1.26 5.23 -104.97 -0.55 -1.81 16 6 C -0.06 -0.46 7.56 -39.20 -0.30 -0.75 16 7 C -0.16 -1.06 10.01 -39.57 -0.40 -1.45 16 8 C 0.12 0.90 7.31 -39.27 -0.29 0.61 16 9 F -0.14 -1.12 17.26 2.25 0.04 -1.09 16 10 C -0.16 -1.12 10.01 -39.58 -0.40 -1.51 16 11 C -0.04 -0.29 9.63 -39.20 -0.38 -0.67 16 12 C 0.11 1.41 4.41 -69.63 -0.31 1.10 16 13 C 0.01 0.20 6.19 -2.64 -0.02 0.18 16 14 N -0.45 -7.20 5.95 -239.71 -1.43 -8.63 16 15 C 0.01 0.23 5.31 -4.98 -0.03 0.21 16 16 C 0.44 10.20 7.59 -10.99 -0.08 10.12 16 17 O -0.58 -15.42 15.13 5.55 0.08 -15.34 16 18 N -0.56 -13.98 5.29 -10.97 -0.06 -14.03 16 19 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 23 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C -0.01 -0.16 7.48 -2.76 -0.02 -0.18 16 28 H 0.07 0.42 6.89 -51.93 -0.36 0.06 16 29 H 0.08 0.58 6.18 -51.93 -0.32 0.26 16 30 H 0.08 0.47 5.82 -51.93 -0.30 0.17 16 31 H 0.15 0.82 5.32 -52.49 -0.28 0.54 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 1.06 8.05 -52.48 -0.42 0.64 16 35 H 0.13 1.83 7.20 -51.93 -0.37 1.46 16 36 H 0.07 1.00 6.38 -51.93 -0.33 0.66 16 37 H 0.10 1.73 8.10 -51.93 -0.42 1.31 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.05 0.77 7.70 -51.93 -0.40 0.37 16 40 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -33.29 361.78 -8.37 -41.66 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.07 Total: 9.01 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -2.64 Total: 5.36 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -1.30 Total: -52.89 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.29 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.29 -8.37 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483849727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.063 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds