Wall clock time and date at job start Tue Mar 31 2020 18:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 119.99805 * 2 1 4 4 O 1.21569 * 120.00182 * 184.53980 * 3 2 1 5 5 C 1.47728 * 119.99934 * 4.81882 * 3 2 1 6 6 C 1.39649 * 120.11596 * 320.61177 * 5 3 2 7 7 C 1.37834 * 119.87911 * 179.81507 * 6 5 3 8 8 C 1.38666 * 120.11595 * 0.44084 * 7 6 5 9 9 F 1.35095 * 119.87727 * 179.76418 * 8 7 6 10 10 C 1.38650 * 120.23738 * 359.78880 * 8 7 6 11 11 C 1.37832 * 120.12181 * 359.97438 * 10 8 7 12 12 C 1.46499 * 120.00494 * 180.02562 * 2 1 3 13 13 C 1.53936 * 113.73348 * 38.76062 * 12 2 1 14 14 N 1.48177 * 86.10219 * 221.96230 * 13 12 2 15 15 C 1.46905 * 111.07331 * 137.52364 * 14 13 12 16 16 C 1.50695 * 109.47375 * 70.56057 * 15 14 13 17 17 O 1.21293 * 119.99846 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00408 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00166 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99725 * 359.97438 * 19 18 16 21 21 C 1.38943 * 119.99642 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00453 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99665 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46906 * 60.00182 * 23 21 19 25 25 H 1.48501 * 109.47132 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47368 * 300.00036 * 23 21 19 27 27 C 1.47952 * 90.80148 * 24.60263 * 14 13 12 28 28 H 1.08995 * 109.47091 * 85.55186 * 1 2 3 29 29 H 1.09000 * 109.47140 * 205.55143 * 1 2 3 30 30 H 1.08996 * 109.47239 * 325.54698 * 1 2 3 31 31 H 1.07994 * 120.06023 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.94442 * 180.18500 * 7 6 5 33 33 H 1.07997 * 119.93837 * 179.97438 * 10 8 7 34 34 H 1.08006 * 120.06024 * 179.97438 * 11 10 8 35 35 H 1.08999 * 112.94020 * 170.33337 * 12 2 1 36 36 H 1.09006 * 113.75650 * 336.24605 * 13 12 2 37 37 H 1.09000 * 113.75842 * 107.60497 * 13 12 2 38 38 H 1.08997 * 109.47454 * 190.56665 * 15 14 13 39 39 H 1.09003 * 109.46861 * 310.56438 * 15 14 13 40 40 H 0.96999 * 119.99774 * 0.02562 * 18 16 15 41 41 H 0.97000 * 120.00173 * 180.02562 * 22 21 19 42 42 H 1.09004 * 113.75773 * 221.08604 * 27 14 13 43 43 H 1.09000 * 113.76331 * 89.72394 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1690 -0.0833 5 6 1.4041 2.4443 0.1075 6 6 0.1927 2.6146 -0.5662 7 6 -0.4907 3.8068 -0.4594 8 6 0.0271 4.8393 0.3078 9 9 -0.6444 6.0075 0.4052 10 6 1.2318 4.6772 0.9748 11 6 1.9210 3.4874 0.8788 12 6 2.1976 -1.2687 -0.0006 13 6 1.5559 -2.3543 -0.8833 14 7 1.8639 -3.2921 0.2218 15 6 0.7408 -4.2069 0.4669 16 6 0.6273 -5.1808 -0.6774 17 8 1.4057 -5.1194 -1.6056 18 7 -0.3391 -6.1202 -0.6696 19 6 -0.4420 -7.0066 -1.7104 20 1 0.2511 -6.9519 -2.5368 21 6 -1.4387 -7.9747 -1.7024 22 7 -2.2830 -8.0403 -0.6976 23 14 -1.5794 -9.1820 -3.1210 24 1 -0.3213 -9.9632 -3.2327 25 1 -2.7158 -10.1055 -2.8741 26 1 -1.8132 -8.4368 -4.3839 27 6 1.8625 -2.1781 1.1954 28 1 -0.3633 0.0797 -1.0245 29 1 -0.3633 -0.9272 0.4433 30 1 -0.3633 0.8474 0.5814 31 1 -0.2096 1.8124 -1.1669 32 1 -1.4291 3.9386 -0.9775 33 1 1.6309 5.4847 1.5707 34 1 2.8595 3.3624 1.3985 35 1 3.2670 -1.1417 -0.1691 36 1 0.4887 -2.2093 -1.0516 37 1 2.1085 -2.5578 -1.8005 38 1 0.9132 -4.7538 1.3938 39 1 -0.1829 -3.6341 0.5494 40 1 -0.9618 -6.1691 0.0725 41 1 -2.9785 -8.7164 -0.6919 42 1 2.6597 -2.2411 1.9361 43 1 0.8853 -1.9815 1.6364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483849727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:37 Heat of formation + Delta-G solvation = -55.989638 kcal Electronic energy + Delta-G solvation = -27838.642176 eV Core-core repulsion = 23606.300244 eV Total energy + Delta-G solvation = -4232.341932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.99587 -42.02806 -40.82447 -39.61986 -38.89391 -36.28980 -35.86164 -33.31276 -32.42037 -32.08123 -30.90234 -28.22286 -27.41711 -27.05206 -25.67746 -24.11309 -23.98071 -21.65699 -20.94783 -20.24433 -19.88903 -18.72119 -18.62388 -17.95072 -17.84439 -17.27128 -16.87318 -16.67667 -16.53159 -16.45849 -15.97575 -15.68638 -15.53388 -15.37655 -14.89742 -14.74631 -14.38218 -14.17146 -13.91830 -13.86212 -13.68002 -13.57509 -13.50933 -13.34196 -13.17585 -12.93910 -12.86376 -12.43632 -12.19995 -12.13616 -11.99504 -11.81100 -11.49681 -11.11877 -10.34299 -10.19422 -10.01658 -9.88263 -9.76868 -9.70971 -8.46589 -5.95020 -0.32703 0.16994 1.39418 1.41898 1.51342 1.52397 1.75118 2.04986 2.28993 2.53327 2.81882 3.13302 3.19883 3.24191 3.34075 3.50976 3.67587 3.72311 3.83876 4.08203 4.10290 4.17076 4.23720 4.25798 4.35860 4.40653 4.49781 4.54812 4.66693 4.75064 4.79385 4.83953 4.89527 4.96208 5.02843 5.07650 5.18072 5.31469 5.36896 5.41513 5.73091 5.85006 6.04795 6.22786 6.60426 6.95775 7.13041 7.56148 8.12237 8.70390 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.002052 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.338017 B =13643.371151 C =14374.745649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.594 5.594 3 C 0.560 3.440 4 O -0.575 6.575 5 C -0.153 4.153 6 C -0.059 4.059 7 C -0.154 4.154 8 C 0.111 3.889 9 F -0.141 7.141 10 C -0.157 4.157 11 C -0.043 4.043 12 C 0.124 3.876 13 C 0.013 3.987 14 N -0.479 5.479 15 C 0.027 3.973 16 C 0.439 3.561 17 O -0.620 6.620 18 N -0.572 5.572 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.003 3.997 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.104 0.896 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 25.030 7.252 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.325 5.325 3 C 0.350 3.650 4 O -0.456 6.456 5 C -0.156 4.156 6 C -0.077 4.077 7 C -0.173 4.173 8 C 0.091 3.909 9 F -0.119 7.119 10 C -0.176 4.176 11 C -0.061 4.061 12 C 0.019 3.981 13 C -0.116 4.116 14 N -0.203 5.203 15 C -0.105 4.105 16 C 0.227 3.773 17 O -0.506 6.506 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.126 4.126 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.178 0.822 34 H 0.160 0.840 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.113 24.506 6.598 25.379 hybrid contribution -1.102 -0.387 -0.306 1.207 sum -0.989 24.119 6.292 24.946 Atomic orbital electron populations 1.22478 0.77365 1.05108 1.03539 1.47830 1.08237 1.04617 1.71803 1.18687 0.86631 0.84340 0.75359 1.90785 1.15520 1.87780 1.51474 1.19875 0.97446 0.94315 1.03971 1.21700 0.91677 0.97932 0.96402 1.21362 1.02892 0.92181 1.00858 1.18188 0.91888 0.82202 0.98576 1.91520 1.79674 1.46088 1.94631 1.21274 0.94510 0.99424 1.02342 1.21123 0.98940 0.90675 0.95402 1.22933 0.97955 0.80991 0.96184 1.24230 1.00567 0.90256 0.96569 1.68369 1.37317 1.09937 1.04662 1.22343 0.94938 0.95771 0.97421 1.20749 0.82652 0.84466 0.89462 1.90508 1.45202 1.75255 1.39628 1.41918 1.28956 1.28520 1.21598 1.19584 1.14831 1.10587 1.01223 0.90514 1.25991 0.95008 0.99519 1.00614 1.69652 1.18103 1.36245 1.31941 0.85031 0.77993 0.77692 0.77881 1.19971 1.19442 1.19668 1.24526 1.03698 0.88511 0.95901 0.90296 0.89918 0.88190 0.81925 0.81747 0.82235 0.84041 0.87255 0.89846 0.91343 0.87135 0.89668 0.76909 0.91278 0.87806 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 7.56 127.77 0.97 1.65 16 2 N -0.59 -11.68 3.09 -830.41 -2.57 -14.25 16 3 C 0.56 12.74 7.35 86.75 0.64 13.38 16 4 O -0.58 -17.94 16.38 -3.93 -0.06 -18.00 16 5 C -0.15 -2.55 5.23 -20.09 -0.11 -2.66 16 6 C -0.06 -0.69 7.56 22.52 0.17 -0.52 16 7 C -0.15 -1.60 10.01 22.28 0.22 -1.38 16 8 C 0.11 1.42 7.31 22.47 0.16 1.59 16 9 F -0.14 -2.04 17.26 44.97 0.78 -1.27 16 10 C -0.16 -1.91 10.01 22.27 0.22 -1.69 16 11 C -0.04 -0.64 9.63 22.51 0.22 -0.42 16 12 C 0.12 3.04 4.41 46.56 0.21 3.24 16 13 C 0.01 0.40 6.19 86.37 0.53 0.93 16 14 N -0.48 -14.96 5.95 -912.29 -5.42 -20.39 16 15 C 0.03 0.87 5.31 85.55 0.45 1.32 16 16 C 0.44 20.35 7.59 87.66 0.67 21.01 16 17 O -0.62 -34.02 15.13 -3.07 -0.05 -34.06 16 18 N -0.57 -28.58 5.29 -306.99 -1.62 -30.20 16 19 C -0.33 -18.60 9.68 84.04 0.81 -17.78 16 20 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 21 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 22 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 23 Si 0.99 42.37 29.55 68.60 2.03 44.40 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 C 0.00 0.06 7.48 86.41 0.65 0.71 16 28 H 0.08 0.77 6.89 -2.39 -0.02 0.75 16 29 H 0.08 0.95 6.18 -2.39 -0.01 0.93 16 30 H 0.10 0.84 5.82 -2.39 -0.01 0.83 16 31 H 0.16 1.32 5.32 -2.91 -0.02 1.31 16 32 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 33 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.14 2.08 8.05 -2.91 -0.02 2.06 16 35 H 0.11 3.19 7.20 -2.39 -0.02 3.17 16 36 H 0.08 2.22 6.38 -2.38 -0.02 2.20 16 37 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 38 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.09 2.21 7.70 -2.39 -0.02 2.19 16 40 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 41 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 42 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.10 1.65 6.56 -2.39 -0.02 1.64 16 Total: -1.00 -74.12 361.78 -0.02 -74.14 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.34 Total: 28.58 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 6.28 Total: 19.25 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -9.33 Total: -113.04 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.11 Total: -52.07 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -74.12 -0.02 -74.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483849727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.151 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds