Wall clock time and date at job start Tue Mar 31 2020 18:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46490 * 119.99710 * 2 1 4 4 C 1.53001 * 109.47685 * 269.99924 * 3 2 1 5 5 H 1.09008 * 109.46787 * 60.00253 * 4 3 2 6 6 O 1.42895 * 109.47239 * 300.00363 * 4 3 2 7 7 C 1.53003 * 109.47256 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.46939 * 185.00088 * 7 4 3 9 9 C 1.36931 * 120.00147 * 179.97438 * 8 7 4 10 10 H 1.08002 * 119.99957 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00507 * 180.02562 * 9 8 7 12 12 N 1.31614 * 119.99528 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00211 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47024 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46923 * 119.99944 * 13 11 9 16 16 H 1.48500 * 109.47131 * 239.99853 * 13 11 9 17 17 C 1.34781 * 119.99924 * 180.02562 * 2 1 3 18 18 O 1.21635 * 119.99439 * 185.37689 * 17 2 1 19 19 C 1.47195 * 120.00147 * 5.36982 * 17 2 1 20 20 C 1.38854 * 120.90288 * 326.18391 * 19 17 2 21 21 C 1.39935 * 119.42973 * 179.97438 * 20 19 17 22 22 C 1.35023 * 121.26948 * 0.04527 * 21 20 19 23 23 N 1.36258 * 121.58303 * 359.96626 * 22 21 20 24 24 C 1.36363 * 133.88010 * 180.02562 * 23 22 21 25 25 O 1.35721 * 126.33204 * 359.94553 * 24 23 22 26 26 N 1.31105 * 107.33283 * 179.97438 * 24 23 22 27 27 N 1.28696 * 110.31142 * 0.02562 * 26 24 23 28 28 C 1.31481 * 109.66975 * 359.97438 * 27 26 24 29 29 H 1.08994 * 109.47081 * 275.83324 * 1 2 3 30 30 H 1.08998 * 109.47262 * 35.84291 * 1 2 3 31 31 H 1.09010 * 109.46808 * 155.83804 * 1 2 3 32 32 H 1.09006 * 109.47501 * 30.00607 * 3 2 1 33 33 H 1.09007 * 109.47301 * 150.00016 * 3 2 1 34 34 H 0.96698 * 113.99886 * 299.99675 * 6 4 3 35 35 H 1.08997 * 109.46982 * 305.00111 * 7 4 3 36 36 H 1.08999 * 109.47013 * 65.00234 * 7 4 3 37 37 H 0.97004 * 119.99694 * 0.02562 * 8 7 4 38 38 H 0.96999 * 119.99956 * 179.97438 * 12 11 9 39 39 H 1.07994 * 120.28213 * 359.97438 * 20 19 17 40 40 H 1.07998 * 119.36686 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.20654 * 180.25526 * 22 21 20 42 42 H 0.96695 * 114.00097 * 90.00243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2248 0.7147 -2.1161 7 6 3.2181 3.0352 -1.4423 8 7 3.3580 3.5184 -2.8183 9 6 4.0122 4.6953 -3.0675 10 1 4.4254 5.2671 -2.2497 11 6 4.1444 5.1535 -4.3711 12 7 3.6404 4.4569 -5.3676 13 14 5.0374 6.7585 -4.7110 14 1 5.5071 7.3445 -3.4299 15 1 6.2035 6.4990 -5.5931 16 1 4.1121 7.7078 -5.3803 17 6 2.1390 -1.1672 -0.0005 18 8 3.3513 -1.1695 0.0982 19 6 1.4079 -2.4391 -0.1204 20 6 0.1445 -2.5907 0.4356 21 6 -0.5231 -3.8133 0.3027 22 6 0.0379 -4.8502 -0.3555 23 7 1.2749 -4.7528 -0.9186 24 6 2.0636 -5.6144 -1.6223 25 8 1.7601 -6.8955 -1.9521 26 7 3.1694 -4.9765 -1.9208 27 7 3.1329 -3.7772 -1.4553 28 6 1.9936 -3.5799 -0.8294 29 1 -0.3633 0.1044 1.0223 30 1 -0.3634 0.8330 -0.6017 31 1 -0.3633 -0.9377 -0.4207 32 1 1.6084 2.0284 0.5139 33 1 3.1500 1.1384 0.5139 34 1 4.0873 0.5462 -1.7126 35 1 2.6710 3.7709 -0.8528 36 1 4.2063 2.8838 -1.0082 37 1 2.9866 3.0050 -3.5527 38 1 3.7324 4.7772 -6.2786 39 1 -0.3188 -1.7719 0.9660 40 1 -1.5058 -3.9299 0.7351 41 1 -0.5089 -5.7775 -0.4417 42 1 1.3065 -6.9861 -2.8012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486310515.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:59 Heat of formation + Delta-G solvation = 1.377485 kcal Electronic energy + Delta-G solvation = -28683.769984 eV Core-core repulsion = 24473.835639 eV Total energy + Delta-G solvation = -4209.934345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.65994 -41.22479 -39.22581 -38.75391 -38.55832 -36.54316 -35.91586 -34.76265 -33.20800 -32.25319 -31.14189 -29.94308 -28.14854 -27.30981 -25.65006 -24.77033 -24.41061 -23.70528 -22.63440 -21.27696 -19.95992 -19.44428 -19.23756 -18.51936 -18.15516 -17.80912 -17.36986 -16.84730 -16.67277 -16.47390 -16.31233 -16.12779 -15.79531 -15.28741 -15.02484 -14.69376 -14.24227 -14.18369 -13.93925 -13.83650 -13.71347 -13.64642 -13.43355 -12.98693 -12.95543 -12.81509 -12.65740 -12.56766 -12.14039 -12.03405 -11.89444 -11.80863 -11.57833 -11.18212 -10.99530 -10.88438 -10.72029 -9.59382 -9.22509 -9.02046 -7.95297 -5.25361 -0.80756 -0.09648 0.67804 1.40766 1.45454 1.48157 1.54214 1.57963 1.87535 2.36181 2.53929 2.55487 2.97682 3.12068 3.36167 3.45754 3.54159 3.70912 3.77430 3.79257 4.05787 4.14527 4.26249 4.33252 4.40529 4.48050 4.55751 4.67218 4.69385 4.73458 4.80616 4.86408 4.92213 4.94634 5.15534 5.24936 5.44512 5.48845 5.57930 6.25470 6.27930 6.32621 6.77178 7.13603 7.29518 7.31523 8.07909 8.30579 9.28541 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.002502 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.465157 B =11187.601278 C =12054.802086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.598 5.598 3 C 0.097 3.903 4 C 0.092 3.908 5 H 0.093 0.907 6 O -0.570 6.570 7 C 0.124 3.876 8 N -0.743 5.743 9 C -0.246 4.246 10 H 0.079 0.921 11 C -0.081 4.081 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.263 1.263 15 H -0.296 1.296 16 H -0.289 1.289 17 C 0.562 3.438 18 O -0.562 6.562 19 C -0.137 4.137 20 C -0.012 4.012 21 C -0.134 4.134 22 C 0.086 3.914 23 N -0.406 5.406 24 C 0.326 3.674 25 O -0.421 6.421 26 N -0.292 5.292 27 N -0.317 5.317 28 C 0.224 3.776 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.374 0.626 35 H 0.047 0.953 36 H 0.019 0.981 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.207 0.793 40 H 0.224 0.776 41 H 0.218 0.782 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.690 -21.546 18.186 35.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.329 5.329 3 C -0.026 4.026 4 C 0.032 3.968 5 H 0.111 0.889 6 O -0.376 6.376 7 C -0.003 4.003 8 N -0.385 5.385 9 C -0.377 4.377 10 H 0.097 0.903 11 C -0.273 4.273 12 N -0.622 5.622 13 Si 0.807 3.193 14 H -0.187 1.187 15 H -0.224 1.224 16 H -0.216 1.216 17 C 0.351 3.649 18 O -0.440 6.440 19 C -0.144 4.144 20 C -0.036 4.036 21 C -0.155 4.155 22 C -0.034 4.034 23 N -0.099 5.099 24 C 0.024 3.976 25 O -0.224 6.224 26 N -0.140 5.140 27 N -0.162 5.162 28 C -0.030 4.030 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.222 0.778 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.204 0.796 38 H 0.059 0.941 39 H 0.224 0.776 40 H 0.241 0.759 41 H 0.234 0.766 42 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -19.745 -21.555 17.714 34.180 hybrid contribution 0.138 0.364 -0.875 0.957 sum -19.606 -21.192 16.839 33.422 Atomic orbital electron populations 1.22879 0.76837 1.05306 1.04705 1.47554 1.08641 1.04326 1.72396 1.22102 0.99240 0.85551 0.95736 1.22501 0.94457 0.86295 0.93558 0.88926 1.86538 1.33461 1.59591 1.57985 1.21454 0.97471 0.94571 0.86845 1.42501 1.67797 1.24739 1.03468 1.19717 1.27148 0.98325 0.92535 0.90326 1.25672 1.03145 1.02869 0.95572 1.69867 1.52400 1.41197 0.98741 0.85003 0.77384 0.79008 0.77926 1.18712 1.22386 1.21616 1.17888 0.86616 0.83876 0.76520 1.90816 1.15539 1.87446 1.50232 1.19963 0.97397 0.90873 1.06197 1.22989 0.88811 1.00116 0.91661 1.21576 1.03927 0.89918 1.00037 1.22876 0.81926 1.04423 0.94222 1.44195 1.15595 1.11546 1.38591 1.21731 0.88395 0.86735 1.00704 1.84991 1.79570 1.12218 1.45589 1.74523 1.18767 1.00902 1.19848 1.74855 1.17408 1.08184 1.15710 1.22901 0.90586 0.87643 1.01824 0.87414 0.90187 0.88545 0.85404 0.90360 0.77814 0.93501 0.96354 0.79554 0.94067 0.77626 0.75908 0.76584 0.70841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 8.86 127.77 1.13 1.52 16 2 N -0.60 -12.70 2.83 -850.89 -2.41 -15.10 16 3 C 0.10 2.36 5.20 86.38 0.45 2.81 16 4 C 0.09 3.14 3.27 30.60 0.10 3.24 16 5 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 6 O -0.57 -24.05 12.21 -147.61 -1.80 -25.86 16 7 C 0.12 5.03 5.90 86.38 0.51 5.54 16 8 N -0.74 -40.09 5.55 -343.45 -1.91 -42.00 16 9 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 10 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 11 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 12 N -0.97 -62.70 13.06 21.65 0.28 -62.42 16 13 Si 0.98 47.85 29.55 68.60 2.03 49.88 16 14 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 16 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 17 C 0.56 16.07 6.87 86.60 0.59 16.66 16 18 O -0.56 -21.94 15.58 -2.78 -0.04 -21.99 16 19 C -0.14 -3.03 5.61 -18.61 -0.10 -3.14 16 20 C -0.01 -0.09 7.53 22.83 0.17 0.08 16 21 C -0.13 -0.12 9.91 21.94 0.22 0.10 16 22 C 0.09 0.51 10.94 83.27 0.91 1.42 16 23 N -0.41 -7.85 2.97 -462.35 -1.37 -9.22 16 24 C 0.33 7.62 9.41 179.66 1.69 9.31 16 25 O -0.42 -5.82 13.65 -90.43 -1.23 -7.05 16 26 N -0.29 -10.10 12.20 -173.35 -2.11 -12.22 16 27 N -0.32 -12.26 12.20 -51.50 -0.63 -12.89 16 28 C 0.22 6.48 7.79 135.67 1.06 7.54 16 29 H 0.11 0.10 7.58 -2.39 -0.02 0.08 16 30 H 0.08 0.76 8.11 -2.39 -0.02 0.74 16 31 H 0.10 0.60 4.62 -2.38 -0.01 0.59 16 32 H 0.13 2.10 8.07 -2.38 -0.02 2.08 16 33 H 0.08 2.16 7.35 -2.38 -0.02 2.14 16 34 H 0.37 15.66 8.63 -74.06 -0.64 15.02 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.37 22.09 7.67 -92.71 -0.71 21.38 16 38 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.21 -0.16 5.07 -2.91 -0.01 -0.17 16 40 H 0.22 -2.32 8.06 -2.91 -0.02 -2.34 16 41 H 0.22 -0.73 8.06 -2.91 -0.02 -0.75 16 42 H 0.43 0.97 9.06 -74.06 -0.67 0.30 16 Total: -1.00 -104.14 360.74 -2.06 -106.20 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.90 Total: 25.44 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 8.03 Total: 27.22 kcal Atomic # 7 Polarization: -145.70 SS G_CDS: -8.15 Total: -153.85 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -3.08 Total: -54.89 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -104.14 -2.06 -106.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486310515.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.579 kcal (2) G-P(sol) polarization free energy of solvation -104.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds