Wall clock time and date at job start Tue Mar 31 2020 18:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46504 * 120.00069 * 2 1 4 4 C 1.53001 * 109.46969 * 269.99573 * 3 2 1 5 5 H 1.08998 * 109.47076 * 305.00411 * 4 3 2 6 6 O 1.42902 * 109.46957 * 64.99903 * 4 3 2 7 7 C 1.52989 * 109.47015 * 184.99582 * 4 3 2 8 8 N 1.46499 * 109.47110 * 179.97438 * 7 4 3 9 9 C 1.36939 * 119.99951 * 179.72833 * 8 7 4 10 10 H 1.07995 * 120.00470 * 0.28003 * 9 8 7 11 11 C 1.38820 * 119.99771 * 180.27248 * 9 8 7 12 12 N 1.31616 * 119.99910 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99855 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46966 * 60.00288 * 13 11 9 15 15 H 1.48495 * 109.47392 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47233 * 300.00588 * 13 11 9 17 17 C 1.34781 * 119.99797 * 179.97438 * 2 1 3 18 18 O 1.21641 * 119.99586 * 175.42387 * 17 2 1 19 19 C 1.47200 * 119.99975 * 355.42664 * 17 2 1 20 20 C 1.38838 * 120.90398 * 47.23342 * 19 17 2 21 21 C 1.39935 * 119.43436 * 179.97438 * 20 19 17 22 22 C 1.35025 * 121.26627 * 0.02562 * 21 20 19 23 23 N 1.36254 * 121.58115 * 359.97438 * 22 21 20 24 24 C 1.36370 * 133.87903 * 180.02562 * 23 22 21 25 25 O 1.35705 * 126.33232 * 359.96329 * 24 23 22 26 26 N 1.31114 * 107.32738 * 179.30421 * 24 23 22 27 27 N 1.28689 * 110.31286 * 0.59731 * 26 24 23 28 28 C 1.31478 * 109.66948 * 359.45684 * 27 26 24 29 29 H 1.09002 * 109.46360 * 95.06579 * 1 2 3 30 30 H 1.08994 * 109.47229 * 215.06030 * 1 2 3 31 31 H 1.08998 * 109.46824 * 335.07063 * 1 2 3 32 32 H 1.08993 * 109.46797 * 149.99452 * 3 2 1 33 33 H 1.08999 * 109.46965 * 29.99481 * 3 2 1 34 34 H 0.96701 * 114.00509 * 59.99900 * 6 4 3 35 35 H 1.09004 * 109.46820 * 60.00494 * 7 4 3 36 36 H 1.08998 * 109.47875 * 300.00340 * 7 4 3 37 37 H 0.96999 * 120.00316 * 0.02562 * 8 7 4 38 38 H 0.96998 * 119.99532 * 180.02562 * 12 11 9 39 39 H 1.08002 * 120.28414 * 359.97438 * 20 19 17 40 40 H 1.07994 * 119.36807 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.21039 * 179.97438 * 22 21 20 42 42 H 0.96703 * 114.00038 * 90.00525 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4527 1.7103 -1.4425 5 1 2.9643 0.9130 -1.9815 6 8 1.2062 1.9934 -2.0815 7 6 3.3238 2.9680 -1.4443 8 7 3.5686 3.3905 -2.8256 9 6 4.3246 4.5042 -3.0771 10 1 4.7441 5.0686 -2.2575 11 6 4.5518 4.9078 -4.3858 12 7 4.0402 4.2202 -5.3847 13 14 5.5824 6.4274 -4.7290 14 1 6.9452 6.2378 -4.1703 15 1 5.6737 6.6429 -6.1954 16 1 4.9473 7.6101 -4.0939 17 6 2.1389 -1.1673 0.0005 18 8 3.3524 -1.1689 -0.0835 19 6 1.4064 -2.4399 0.1027 20 6 0.2917 -2.6866 -0.6874 21 6 -0.3812 -3.9074 -0.5654 22 6 0.0322 -4.8514 0.3071 23 7 1.1199 -4.6584 1.1048 24 6 1.7456 -5.4169 2.0497 25 8 1.3857 -6.6634 2.4478 26 7 2.7675 -4.7248 2.4922 27 7 2.8218 -3.5820 1.9030 28 6 1.8377 -3.4835 1.0367 29 1 -0.3632 -0.0907 -1.0237 30 1 -0.3633 -0.8411 0.5903 31 1 -0.3633 0.9319 0.4332 32 1 3.1499 1.1384 0.5139 33 1 1.6085 2.0284 0.5138 34 1 0.6956 2.6948 -1.6544 35 1 4.2746 2.7520 -0.9570 36 1 2.8122 3.7653 -0.9054 37 1 3.1916 2.8838 -3.5618 38 1 4.1993 4.5020 -6.2991 39 1 -0.0530 -1.9426 -1.3903 40 1 -1.2483 -4.0980 -1.1802 41 1 -0.5122 -5.7816 0.3743 42 1 1.8005 -7.3737 1.9393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486310519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:04 Heat of formation + Delta-G solvation = 26.717260 kcal Electronic energy + Delta-G solvation = -28382.744224 eV Core-core repulsion = 24173.908693 eV Total energy + Delta-G solvation = -4208.835530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.95591 -40.28077 -38.52233 -38.16369 -37.43485 -35.38571 -34.13595 -33.93921 -31.72399 -31.27888 -29.92166 -29.04434 -27.07870 -26.05216 -24.69695 -23.93781 -23.33872 -22.56388 -21.21004 -20.60127 -19.19656 -18.67237 -17.85790 -17.27551 -17.15444 -16.96040 -16.54832 -16.05480 -15.98619 -15.26631 -15.21977 -14.82460 -14.41926 -14.10529 -13.78674 -13.58872 -13.22497 -13.12973 -13.08888 -12.95072 -12.75561 -12.49177 -12.42106 -12.16159 -12.02915 -11.64157 -11.33096 -10.91365 -10.87421 -10.77575 -10.67243 -10.22514 -10.15272 -10.05640 -9.80111 -9.65747 -8.85314 -8.64174 -8.55293 -6.88011 -5.71122 -3.00259 -0.24199 0.48048 1.31743 2.07145 2.28601 2.65072 2.93663 3.13167 3.47322 3.50937 3.51374 3.52703 3.72592 4.07815 4.10332 4.30616 4.59163 4.73930 4.79932 4.86800 4.90010 5.03513 5.08826 5.20139 5.26805 5.28959 5.31951 5.47703 5.58930 5.60285 5.68995 5.78762 5.98080 6.01220 6.24745 6.38589 6.58891 6.70126 6.77402 7.12905 7.72293 7.95658 8.02988 8.03549 8.47318 9.58628 10.16754 10.52617 11.51305 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.002202 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.209279 B =12711.042854 C =13083.161076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.598 5.598 3 C 0.089 3.911 4 C 0.086 3.914 5 H 0.102 0.898 6 O -0.551 6.551 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.564 3.436 18 O -0.501 6.501 19 C -0.076 4.076 20 C -0.048 4.048 21 C -0.139 4.139 22 C 0.084 3.916 23 N -0.406 5.406 24 C 0.315 3.685 25 O -0.427 6.427 26 N -0.236 5.236 27 N -0.250 5.250 28 C 0.233 3.767 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.367 0.633 35 H 0.028 0.972 36 H 0.020 0.980 37 H 0.389 0.611 38 H 0.255 0.745 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.101 -21.544 13.057 30.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C -0.034 4.034 4 C 0.026 3.974 5 H 0.120 0.880 6 O -0.355 6.355 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.350 3.650 18 O -0.375 6.375 19 C -0.083 4.083 20 C -0.072 4.072 21 C -0.161 4.161 22 C -0.038 4.038 23 N -0.098 5.098 24 C 0.015 3.985 25 O -0.226 6.226 26 N -0.086 5.086 27 N -0.096 5.096 28 C -0.019 4.019 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.213 0.787 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.223 0.777 38 H 0.065 0.935 39 H 0.181 0.819 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -15.163 -21.478 14.058 29.814 hybrid contribution -0.753 0.229 -1.157 1.399 sum -15.916 -21.249 12.900 29.517 Atomic orbital electron populations 1.22047 0.79300 1.03239 1.02238 1.47553 1.07133 1.05446 1.72988 1.22346 0.98528 0.83726 0.98805 1.22553 0.85171 0.98281 0.91436 0.88000 1.86600 1.32337 1.59035 1.57533 1.21216 0.96453 0.92862 0.89746 1.42225 1.61962 1.32016 1.00779 1.19184 1.23878 1.02435 0.91808 0.91305 1.24759 1.01230 0.99397 0.95592 1.69673 1.49181 1.40823 0.98240 0.86255 0.80184 0.82804 0.76844 1.21244 1.21698 1.21307 1.17482 0.87006 0.82616 0.77902 1.90921 1.12830 1.86443 1.47319 1.20055 0.97241 0.93649 0.97374 1.22032 0.91292 0.97527 0.96348 1.20850 1.02445 0.92955 0.99801 1.21756 0.88188 1.01965 0.91928 1.44060 1.22251 1.16117 1.27413 1.21792 0.93439 0.89772 0.93502 1.85016 1.69883 1.09746 1.57979 1.74709 1.12707 1.00642 1.20528 1.74949 1.16801 1.10575 1.07308 1.22578 0.92189 0.86975 1.00199 0.91380 0.91643 0.90446 0.88544 0.89716 0.78698 0.95395 0.96258 0.77682 0.93494 0.81922 0.81703 0.80954 0.73717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 8.69 59.85 0.52 1.06 16 2 N -0.60 -6.91 2.84 -182.93 -0.52 -7.43 16 3 C 0.09 1.13 5.07 -4.04 -0.02 1.11 16 4 C 0.09 1.40 3.30 -26.74 -0.09 1.31 16 5 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 6 O -0.55 -8.54 12.64 -35.23 -0.45 -8.98 16 7 C 0.13 2.52 5.92 -4.05 -0.02 2.50 16 8 N -0.72 -18.93 5.49 -59.91 -0.33 -19.26 16 9 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 13 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 C 0.56 7.98 7.29 -12.62 -0.09 7.89 16 18 O -0.50 -9.39 16.68 5.24 0.09 -9.30 16 19 C -0.08 -0.85 5.12 -102.69 -0.53 -1.38 16 20 C -0.05 -0.32 7.85 -38.72 -0.30 -0.62 16 21 C -0.14 -0.54 9.91 -40.09 -0.40 -0.93 16 22 C 0.08 0.41 10.94 -16.73 -0.18 0.23 16 23 N -0.41 -3.81 2.97 -62.51 -0.19 -4.00 16 24 C 0.31 3.27 9.41 -88.64 -0.83 2.43 16 25 O -0.43 -2.80 13.65 -18.82 -0.26 -3.06 16 26 N -0.24 -3.38 12.20 29.71 0.36 -3.01 16 27 N -0.25 -3.99 12.26 32.37 0.40 -3.59 16 28 C 0.23 2.99 7.90 -153.91 -1.22 1.78 16 29 H 0.07 0.44 7.05 -51.93 -0.37 0.07 16 30 H 0.06 0.38 6.21 -51.93 -0.32 0.06 16 31 H 0.08 0.45 7.84 -51.93 -0.41 0.04 16 32 H 0.10 1.37 7.49 -51.93 -0.39 0.98 16 33 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 34 H 0.37 4.43 9.05 45.56 0.41 4.84 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.39 10.91 7.54 -40.82 -0.31 10.60 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.16 0.80 6.18 -52.49 -0.32 0.47 16 40 H 0.17 0.02 8.06 -52.49 -0.42 -0.41 16 41 H 0.17 0.20 8.06 -52.49 -0.42 -0.22 16 42 H 0.41 0.45 9.06 45.56 0.41 0.87 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -41.34 364.50 -6.47 -47.80 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -3.36 Total: 7.93 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -3.41 Total: 7.78 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.45 Total: -65.47 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.61 Total: -21.34 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -41.34 -6.47 -47.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486310519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.520 kcal (2) G-P(sol) polarization free energy of solvation -41.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds