Wall clock time and date at job start Tue Mar 31 2020 18:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46504 * 120.00069 * 2 1 4 4 C 1.53001 * 109.46969 * 269.99573 * 3 2 1 5 5 H 1.08998 * 109.47076 * 305.00411 * 4 3 2 6 6 O 1.42902 * 109.46957 * 64.99903 * 4 3 2 7 7 C 1.52989 * 109.47015 * 184.99582 * 4 3 2 8 8 N 1.46499 * 109.47110 * 179.97438 * 7 4 3 9 9 C 1.36939 * 119.99951 * 179.72833 * 8 7 4 10 10 H 1.07995 * 120.00470 * 0.28003 * 9 8 7 11 11 C 1.38820 * 119.99771 * 180.27248 * 9 8 7 12 12 N 1.31616 * 119.99910 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99855 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46966 * 60.00288 * 13 11 9 15 15 H 1.48495 * 109.47392 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47233 * 300.00588 * 13 11 9 17 17 C 1.34781 * 119.99797 * 179.97438 * 2 1 3 18 18 O 1.21641 * 119.99586 * 175.42387 * 17 2 1 19 19 C 1.47200 * 119.99975 * 355.42664 * 17 2 1 20 20 C 1.38838 * 120.90398 * 47.23342 * 19 17 2 21 21 C 1.39935 * 119.43436 * 179.97438 * 20 19 17 22 22 C 1.35025 * 121.26627 * 0.02562 * 21 20 19 23 23 N 1.36254 * 121.58115 * 359.97438 * 22 21 20 24 24 C 1.36370 * 133.87903 * 180.02562 * 23 22 21 25 25 O 1.35705 * 126.33232 * 359.96329 * 24 23 22 26 26 N 1.31114 * 107.32738 * 179.30421 * 24 23 22 27 27 N 1.28689 * 110.31286 * 0.59731 * 26 24 23 28 28 C 1.31478 * 109.66948 * 359.45684 * 27 26 24 29 29 H 1.09002 * 109.46360 * 95.06579 * 1 2 3 30 30 H 1.08994 * 109.47229 * 215.06030 * 1 2 3 31 31 H 1.08998 * 109.46824 * 335.07063 * 1 2 3 32 32 H 1.08993 * 109.46797 * 149.99452 * 3 2 1 33 33 H 1.08999 * 109.46965 * 29.99481 * 3 2 1 34 34 H 0.96701 * 114.00509 * 59.99900 * 6 4 3 35 35 H 1.09004 * 109.46820 * 60.00494 * 7 4 3 36 36 H 1.08998 * 109.47875 * 300.00340 * 7 4 3 37 37 H 0.96999 * 120.00316 * 0.02562 * 8 7 4 38 38 H 0.96998 * 119.99532 * 180.02562 * 12 11 9 39 39 H 1.08002 * 120.28414 * 359.97438 * 20 19 17 40 40 H 1.07994 * 119.36807 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.21039 * 179.97438 * 22 21 20 42 42 H 0.96703 * 114.00038 * 90.00525 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4527 1.7103 -1.4425 5 1 2.9643 0.9130 -1.9815 6 8 1.2062 1.9934 -2.0815 7 6 3.3238 2.9680 -1.4443 8 7 3.5686 3.3905 -2.8256 9 6 4.3246 4.5042 -3.0771 10 1 4.7441 5.0686 -2.2575 11 6 4.5518 4.9078 -4.3858 12 7 4.0402 4.2202 -5.3847 13 14 5.5824 6.4274 -4.7290 14 1 6.9452 6.2378 -4.1703 15 1 5.6737 6.6429 -6.1954 16 1 4.9473 7.6101 -4.0939 17 6 2.1389 -1.1673 0.0005 18 8 3.3524 -1.1689 -0.0835 19 6 1.4064 -2.4399 0.1027 20 6 0.2917 -2.6866 -0.6874 21 6 -0.3812 -3.9074 -0.5654 22 6 0.0322 -4.8514 0.3071 23 7 1.1199 -4.6584 1.1048 24 6 1.7456 -5.4169 2.0497 25 8 1.3857 -6.6634 2.4478 26 7 2.7675 -4.7248 2.4922 27 7 2.8218 -3.5820 1.9030 28 6 1.8377 -3.4835 1.0367 29 1 -0.3632 -0.0907 -1.0237 30 1 -0.3633 -0.8411 0.5903 31 1 -0.3633 0.9319 0.4332 32 1 3.1499 1.1384 0.5139 33 1 1.6085 2.0284 0.5138 34 1 0.6956 2.6948 -1.6544 35 1 4.2746 2.7520 -0.9570 36 1 2.8122 3.7653 -0.9054 37 1 3.1916 2.8838 -3.5618 38 1 4.1993 4.5020 -6.2991 39 1 -0.0530 -1.9426 -1.3903 40 1 -1.2483 -4.0980 -1.1802 41 1 -0.5122 -5.7816 0.3743 42 1 1.8005 -7.3737 1.9393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486310519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:03 Heat of formation + Delta-G solvation = -11.213628 kcal Electronic energy + Delta-G solvation = -28384.389030 eV Core-core repulsion = 24173.908693 eV Total energy + Delta-G solvation = -4210.480337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.69754 -41.23328 -39.23873 -38.76424 -38.69321 -36.50378 -35.82749 -34.79436 -33.21062 -32.31618 -31.12861 -30.02296 -27.95030 -27.34675 -25.68999 -24.81818 -24.46394 -23.72786 -22.69191 -21.35974 -19.93611 -19.37751 -19.23530 -18.54975 -18.05314 -17.81915 -17.63302 -17.05980 -16.63594 -16.47526 -16.34797 -16.07097 -15.76184 -15.26456 -15.03481 -14.72417 -14.37604 -14.09817 -13.90594 -13.80230 -13.72551 -13.61585 -13.35566 -13.08403 -12.99362 -12.89685 -12.72391 -12.63617 -12.21027 -12.07988 -12.02410 -11.81024 -11.64062 -11.28454 -10.99932 -10.96509 -10.76889 -9.63796 -9.26219 -9.01091 -7.94288 -5.24136 -0.81847 -0.13940 0.65167 1.31511 1.46585 1.49887 1.50778 1.56726 1.81879 2.17676 2.51345 2.56116 2.93711 3.08295 3.36723 3.43436 3.51121 3.70042 3.73577 3.76946 3.99368 4.18248 4.26684 4.32340 4.37459 4.47929 4.57354 4.65319 4.67446 4.73409 4.76241 4.86498 4.93929 4.97772 5.13883 5.23325 5.44366 5.47942 5.54275 6.23533 6.26569 6.27930 6.93867 7.00840 7.23530 7.33058 8.09091 8.32582 9.28977 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.002202 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.209279 B =12711.042854 C =13083.161076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.594 5.594 3 C 0.098 3.902 4 C 0.108 3.892 5 H 0.064 0.936 6 O -0.556 6.556 7 C 0.122 3.878 8 N -0.740 5.740 9 C -0.250 4.250 10 H 0.076 0.924 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.977 3.023 14 H -0.281 1.281 15 H -0.294 1.294 16 H -0.273 1.273 17 C 0.558 3.442 18 O -0.569 6.569 19 C -0.130 4.130 20 C -0.005 4.005 21 C -0.131 4.131 22 C 0.091 3.909 23 N -0.404 5.404 24 C 0.330 3.670 25 O -0.420 6.420 26 N -0.287 5.287 27 N -0.320 5.320 28 C 0.225 3.775 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.385 0.615 35 H 0.018 0.982 36 H 0.043 0.957 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.185 0.815 40 H 0.219 0.781 41 H 0.220 0.780 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.960 -22.345 12.983 33.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.325 5.325 3 C -0.026 4.026 4 C 0.047 3.953 5 H 0.082 0.918 6 O -0.363 6.363 7 C -0.005 4.005 8 N -0.383 5.383 9 C -0.381 4.381 10 H 0.094 0.906 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.806 3.194 14 H -0.207 1.207 15 H -0.221 1.221 16 H -0.199 1.199 17 C 0.346 3.654 18 O -0.449 6.449 19 C -0.137 4.137 20 C -0.029 4.029 21 C -0.152 4.152 22 C -0.030 4.030 23 N -0.097 5.097 24 C 0.028 3.972 25 O -0.223 6.223 26 N -0.135 5.135 27 N -0.165 5.165 28 C -0.028 4.028 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.234 0.766 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.202 0.798 40 H 0.236 0.764 41 H 0.237 0.763 42 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -19.071 -22.287 14.043 32.521 hybrid contribution 0.236 0.329 -1.151 1.220 sum -18.836 -21.958 12.892 31.672 Atomic orbital electron populations 1.22378 0.76217 1.05208 1.03664 1.47653 1.08946 1.04212 1.71672 1.22142 0.98864 0.85455 0.96134 1.22103 0.84761 0.95238 0.93197 0.91785 1.86564 1.31697 1.59911 1.58112 1.21433 0.97054 0.95193 0.86850 1.42430 1.61750 1.31405 1.02738 1.19634 1.23435 1.02875 0.92176 0.90563 1.25643 1.03067 1.02782 0.95506 1.69842 1.51057 1.42742 0.98337 0.85159 0.78586 0.79381 0.76299 1.20678 1.22054 1.19887 1.18077 0.86532 0.84248 0.76581 1.90867 1.15828 1.87585 1.50578 1.19801 1.00256 0.92712 1.00962 1.22501 0.88378 0.98767 0.93281 1.21473 1.03154 0.90966 0.99584 1.22819 0.86174 1.03928 0.90045 1.44183 1.23041 1.14777 1.27708 1.21714 0.92302 0.90538 0.92611 1.84994 1.69893 1.08872 1.58561 1.74507 1.15347 1.01221 1.22437 1.74789 1.19660 1.12040 1.10057 1.22745 0.91952 0.88292 0.99815 0.89981 0.89968 0.88391 0.90810 0.85807 0.76599 0.96373 0.93903 0.79290 0.93983 0.79803 0.76391 0.76303 0.70774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 8.69 127.77 1.11 1.86 16 2 N -0.59 -13.47 2.84 -850.89 -2.41 -15.89 16 3 C 0.10 2.47 5.07 86.38 0.44 2.91 16 4 C 0.11 3.56 3.30 30.59 0.10 3.66 16 5 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 6 O -0.56 -16.55 12.64 -148.98 -1.88 -18.43 16 7 C 0.12 4.94 5.92 86.38 0.51 5.45 16 8 N -0.74 -39.36 5.49 -343.46 -1.89 -41.25 16 9 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 10 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 11 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 12 N -0.97 -61.36 13.06 21.65 0.28 -61.07 16 13 Si 0.98 47.27 29.55 68.60 2.03 49.29 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 15 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 17 C 0.56 16.59 7.29 86.60 0.63 17.23 16 18 O -0.57 -23.55 16.68 -4.16 -0.07 -23.62 16 19 C -0.13 -2.89 5.12 -18.61 -0.10 -2.98 16 20 C -0.01 -0.05 7.85 22.82 0.18 0.13 16 21 C -0.13 -0.29 9.91 21.94 0.22 -0.07 16 22 C 0.09 0.48 10.94 83.27 0.91 1.39 16 23 N -0.40 -6.97 2.97 -462.35 -1.37 -8.35 16 24 C 0.33 6.70 9.41 179.66 1.69 8.39 16 25 O -0.42 -4.66 13.65 -90.26 -1.23 -5.90 16 26 N -0.29 -8.77 12.20 -173.35 -2.11 -10.88 16 27 N -0.32 -11.12 12.26 -51.50 -0.63 -11.75 16 28 C 0.23 5.98 7.90 135.68 1.07 7.05 16 29 H 0.08 0.73 7.05 -2.39 -0.02 0.72 16 30 H 0.08 0.68 6.21 -2.39 -0.01 0.67 16 31 H 0.10 0.75 7.84 -2.39 -0.02 0.73 16 32 H 0.07 2.24 7.49 -2.39 -0.02 2.22 16 33 H 0.12 2.14 7.86 -2.39 -0.02 2.12 16 34 H 0.39 8.30 9.05 -74.06 -0.67 7.63 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.38 21.67 7.54 -92.71 -0.70 20.97 16 38 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.18 1.00 6.18 -2.91 -0.02 0.98 16 40 H 0.22 -1.72 8.06 -2.91 -0.02 -1.75 16 41 H 0.22 -0.94 8.06 -2.91 -0.02 -0.96 16 42 H 0.43 -0.08 9.06 -74.05 -0.67 -0.75 16 Total: -1.00 -99.99 364.50 -2.15 -102.13 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.92 Total: 18.41 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 8.07 Total: 27.29 kcal Atomic # 7 Polarization: -141.05 SS G_CDS: -8.14 Total: -149.19 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -3.18 Total: -47.95 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -99.99 -2.15 -102.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486310519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.921 kcal (2) G-P(sol) polarization free energy of solvation -99.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds