Wall clock time and date at job start Tue Mar 31 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35455 * 124.79429 * 2 1 4 4 C 1.36384 * 109.77507 * 180.02562 * 3 2 1 5 5 C 1.46896 * 126.76068 * 180.02562 * 4 3 2 6 6 O 1.21681 * 119.99849 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00161 * 359.96812 * 5 4 3 8 8 C 1.46504 * 120.00192 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47597 * 180.02562 * 8 7 5 10 10 H 1.09005 * 109.47111 * 59.99978 * 9 8 7 11 11 O 1.42901 * 109.46863 * 300.00555 * 9 8 7 12 12 C 1.52994 * 109.47437 * 180.02562 * 9 8 7 13 13 N 1.46499 * 109.47374 * 185.00241 * 12 9 8 14 14 C 1.36931 * 120.00464 * 180.02562 * 13 12 9 15 15 H 1.08004 * 119.99944 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00550 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99679 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00291 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47463 * 89.99804 * 18 16 14 20 20 H 1.48498 * 109.46795 * 210.00088 * 18 16 14 21 21 H 1.48503 * 109.46808 * 329.99596 * 18 16 14 22 22 C 1.47446 * 106.47431 * 359.97438 * 4 3 2 23 23 C 1.39284 * 133.98094 * 179.97438 * 22 4 3 24 24 C 1.37949 * 119.65196 * 180.02562 * 23 22 4 25 25 F 1.35094 * 119.87703 * 180.02562 * 24 23 22 26 26 C 1.38944 * 120.24879 * 359.78326 * 24 23 22 27 27 C 1.37756 * 120.60777 * 0.45878 * 26 24 23 28 28 C 1.38049 * 124.79587 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46646 * 270.00365 * 1 2 3 30 30 H 1.08995 * 109.46946 * 29.99749 * 1 2 3 31 31 H 1.08995 * 109.47063 * 150.00469 * 1 2 3 32 32 H 1.08005 * 125.10827 * 0.02562 * 3 2 1 33 33 H 0.97004 * 120.00258 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47025 * 300.00321 * 8 7 5 35 35 H 1.09005 * 109.46908 * 60.00002 * 8 7 5 36 36 H 0.96695 * 113.99638 * 299.98757 * 11 9 8 37 37 H 1.09000 * 109.47270 * 304.99843 * 12 9 8 38 38 H 1.09003 * 109.47187 * 65.00150 * 12 9 8 39 39 H 0.97007 * 119.99630 * 0.02562 * 13 12 9 40 40 H 0.96993 * 119.99895 * 180.02562 * 17 16 14 41 41 H 1.08006 * 120.17561 * 359.97438 * 23 22 4 42 42 H 1.08000 * 119.69868 * 180.26341 * 26 24 23 43 43 H 1.08002 * 120.02194 * 179.80757 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2380 1.1124 0.0000 4 6 3.5552 0.7589 -0.0006 5 6 4.7093 1.6678 -0.0002 6 8 5.8392 1.2162 -0.0004 7 7 4.5166 3.0016 0.0001 8 6 5.6676 3.9080 -0.0002 9 6 5.1760 5.3569 0.0009 10 1 4.5732 5.5353 0.8914 11 8 4.3842 5.5920 -1.1652 12 6 6.3780 6.3034 0.0000 13 7 5.9106 7.6865 0.1215 14 6 6.8140 8.7153 0.1423 15 1 7.8713 8.5070 0.0695 16 6 6.3711 10.0259 0.2568 17 7 5.0827 10.2797 0.3450 18 14 7.6036 11.4293 0.2844 19 1 7.8525 11.8968 -1.1028 20 1 7.0603 12.5492 1.0943 21 1 8.8776 10.9574 0.8839 22 6 3.5927 -0.7150 -0.0003 23 6 4.6192 -1.6565 -0.0011 24 6 4.3118 -3.0013 -0.0011 25 9 5.3038 -3.9183 -0.0013 26 6 2.9858 -3.4162 0.0042 27 6 1.9623 -2.4942 0.0000 28 6 2.2528 -1.1336 -0.0005 29 1 -0.3632 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 1.8668 2.1267 0.0004 33 1 3.6159 3.3616 0.0005 34 1 6.2713 3.7289 0.8896 35 1 6.2707 3.7293 -0.8904 36 1 4.8575 5.4520 -1.9967 37 1 7.0290 6.0648 0.8411 38 1 6.9312 6.1873 -0.9320 39 1 4.9610 7.8735 0.1872 40 1 4.7731 11.1955 0.4247 41 1 5.6504 -1.3353 -0.0025 42 1 2.7553 -4.4713 0.0085 43 1 0.9349 -2.8272 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496995881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:01 Heat of formation + Delta-G solvation = -56.969701 kcal Electronic energy + Delta-G solvation = -27346.579585 eV Core-core repulsion = 23114.195155 eV Total energy + Delta-G solvation = -4232.384431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.00095 -41.92639 -39.37998 -37.53857 -37.28377 -34.34456 -33.98798 -33.38848 -31.33572 -30.52075 -29.82332 -28.81526 -27.13715 -25.29005 -23.51395 -23.10702 -22.09274 -21.69107 -21.39230 -19.84424 -18.25254 -17.69583 -17.17678 -16.80882 -16.45837 -16.16796 -15.99917 -15.86147 -15.55929 -15.46946 -15.02619 -14.57433 -14.44044 -14.42086 -13.75687 -13.58640 -13.47190 -13.23296 -13.20272 -13.04784 -12.95741 -12.76865 -12.62428 -12.30769 -11.85464 -11.47153 -11.33542 -10.97466 -10.82618 -10.62645 -10.19239 -10.06716 -10.05049 -9.81485 -9.50670 -9.07930 -8.91259 -8.61468 -8.08486 -6.95112 -5.77584 -3.07008 0.50642 0.98857 1.65347 2.17641 3.13139 3.15026 3.43156 3.48336 3.49984 3.54399 3.94535 4.11353 4.14683 4.30597 4.52577 4.56096 4.61741 4.70256 4.77701 4.86423 4.89124 4.94124 5.02015 5.24536 5.27279 5.32298 5.55019 5.56498 5.63099 5.80409 5.85917 5.88688 5.96376 6.16526 6.18937 6.26277 6.42651 6.51743 6.63661 6.67087 6.67786 7.53595 7.67795 7.91762 8.27382 8.40720 9.52397 10.08827 10.44508 11.44848 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.001922 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.343923 B =14566.170866 C =15606.603368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.470 5.470 3 C 0.117 3.883 4 C -0.225 4.225 5 C 0.587 3.413 6 O -0.544 6.544 7 N -0.720 5.720 8 C 0.092 3.908 9 C 0.089 3.911 10 H 0.105 0.895 11 O -0.554 6.554 12 C 0.127 3.873 13 N -0.726 5.726 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.037 4.037 23 C -0.097 4.097 24 C 0.075 3.925 25 F -0.140 7.140 26 C -0.133 4.133 27 C -0.095 4.095 28 C 0.075 3.925 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.401 0.599 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.374 0.626 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 -27.627 -1.238 30.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.151 5.151 3 C -0.015 4.015 4 C -0.235 4.235 5 C 0.375 3.625 6 O -0.423 6.423 7 N -0.371 5.371 8 C -0.033 4.033 9 C 0.029 3.971 10 H 0.122 0.878 11 O -0.359 6.359 12 C -0.002 4.002 13 N -0.371 5.371 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.042 4.042 23 C -0.116 4.116 24 C 0.055 3.945 25 F -0.119 7.119 26 C -0.153 4.153 27 C -0.115 4.115 28 C -0.029 4.029 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.199 0.801 33 H 0.236 0.764 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.221 0.779 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.222 0.778 40 H 0.065 0.935 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.814 -27.734 -0.781 30.562 hybrid contribution 0.434 0.877 -0.325 1.031 sum -12.380 -26.858 -1.107 29.594 Atomic orbital electron populations 1.22130 0.76100 1.04965 1.03780 1.43603 1.06579 1.04138 1.60786 1.22213 0.89729 0.91762 0.97752 1.20004 0.92229 0.92051 1.19239 1.17157 0.87744 0.81455 0.76136 1.90785 1.24079 1.76744 1.50657 1.45713 1.10407 1.05280 1.75725 1.22085 0.88435 0.89423 1.03315 1.22401 0.94282 0.90829 0.89553 0.87751 1.86555 1.41281 1.92287 1.15777 1.21206 0.93615 0.86547 0.98841 1.42236 1.07065 0.99113 1.88661 1.19226 0.89460 0.86066 1.42634 0.91181 1.24763 0.96012 0.97338 1.02832 1.69673 1.12150 1.19078 1.57004 0.86169 0.80204 0.82229 0.77460 1.21692 1.21751 1.20730 1.18411 0.91273 0.91671 1.02833 1.20606 1.00819 0.89857 1.00322 1.17368 0.84951 0.86076 1.06070 1.91494 1.60542 1.65609 1.94250 1.20764 0.90468 1.00386 1.03695 1.19792 0.99462 0.88440 1.03807 1.18249 0.89751 0.88343 1.06549 0.90491 0.89100 0.89596 0.80070 0.76439 0.90349 0.90984 0.77926 0.95304 0.95853 0.77762 0.93498 0.83518 0.84289 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 10.99 59.85 0.66 0.85 16 2 N -0.47 -3.25 3.15 -121.58 -0.38 -3.63 16 3 C 0.12 0.90 10.76 -16.62 -0.18 0.72 16 4 C -0.22 -2.55 6.27 -103.31 -0.65 -3.19 16 5 C 0.59 7.95 7.79 -12.76 -0.10 7.85 16 6 O -0.54 -9.37 16.16 5.21 0.08 -9.28 16 7 N -0.72 -8.34 5.44 -61.55 -0.33 -8.68 16 8 C 0.09 1.19 5.34 -4.04 -0.02 1.17 16 9 C 0.09 1.32 3.09 -26.74 -0.08 1.24 16 10 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 11 O -0.55 -8.29 13.03 -35.23 -0.46 -8.75 16 12 C 0.13 2.42 5.90 -4.05 -0.02 2.39 16 13 N -0.73 -18.18 5.55 -59.91 -0.33 -18.51 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 18 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.04 -0.44 6.26 -104.95 -0.66 -1.09 16 23 C -0.10 -1.18 9.83 -39.30 -0.39 -1.57 16 24 C 0.08 0.81 7.29 -39.43 -0.29 0.52 16 25 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 26 C -0.13 -1.08 9.99 -39.50 -0.39 -1.47 16 27 C -0.09 -0.69 9.91 -39.43 -0.39 -1.08 16 28 C 0.08 0.68 6.79 -83.93 -0.57 0.11 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.11 8.13 -51.93 -0.42 -0.31 16 31 H 0.09 0.14 8.03 -51.93 -0.42 -0.28 16 32 H 0.18 0.79 7.38 -52.48 -0.39 0.40 16 33 H 0.40 3.76 7.23 -40.82 -0.29 3.47 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.37 4.68 9.04 45.56 0.41 5.09 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.39 10.36 7.67 -40.82 -0.31 10.04 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 41 H 0.15 1.96 7.45 -52.48 -0.39 1.57 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.54 8.01 -52.49 -0.42 0.12 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -36.31 376.19 -8.08 -44.39 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.74 Total: 11.40 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -3.33 Total: -0.96 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.32 Total: -58.28 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.37 Total: -18.03 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.31 -8.08 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496995881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.580 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds