Wall clock time and date at job start Tue Mar 31 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35455 * 124.79429 * 2 1 4 4 C 1.36384 * 109.77507 * 180.02562 * 3 2 1 5 5 C 1.46896 * 126.76068 * 180.02562 * 4 3 2 6 6 O 1.21681 * 119.99849 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00161 * 359.96812 * 5 4 3 8 8 C 1.46504 * 120.00192 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47597 * 180.02562 * 8 7 5 10 10 H 1.09005 * 109.47111 * 59.99978 * 9 8 7 11 11 O 1.42901 * 109.46863 * 300.00555 * 9 8 7 12 12 C 1.52994 * 109.47437 * 180.02562 * 9 8 7 13 13 N 1.46499 * 109.47374 * 185.00241 * 12 9 8 14 14 C 1.36931 * 120.00464 * 180.02562 * 13 12 9 15 15 H 1.08004 * 119.99944 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00550 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99679 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00291 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47463 * 89.99804 * 18 16 14 20 20 H 1.48498 * 109.46795 * 210.00088 * 18 16 14 21 21 H 1.48503 * 109.46808 * 329.99596 * 18 16 14 22 22 C 1.47446 * 106.47431 * 359.97438 * 4 3 2 23 23 C 1.39284 * 133.98094 * 179.97438 * 22 4 3 24 24 C 1.37949 * 119.65196 * 180.02562 * 23 22 4 25 25 F 1.35094 * 119.87703 * 180.02562 * 24 23 22 26 26 C 1.38944 * 120.24879 * 359.78326 * 24 23 22 27 27 C 1.37756 * 120.60777 * 0.45878 * 26 24 23 28 28 C 1.38049 * 124.79587 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46646 * 270.00365 * 1 2 3 30 30 H 1.08995 * 109.46946 * 29.99749 * 1 2 3 31 31 H 1.08995 * 109.47063 * 150.00469 * 1 2 3 32 32 H 1.08005 * 125.10827 * 0.02562 * 3 2 1 33 33 H 0.97004 * 120.00258 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47025 * 300.00321 * 8 7 5 35 35 H 1.09005 * 109.46908 * 60.00002 * 8 7 5 36 36 H 0.96695 * 113.99638 * 299.98757 * 11 9 8 37 37 H 1.09000 * 109.47270 * 304.99843 * 12 9 8 38 38 H 1.09003 * 109.47187 * 65.00150 * 12 9 8 39 39 H 0.97007 * 119.99630 * 0.02562 * 13 12 9 40 40 H 0.96993 * 119.99895 * 180.02562 * 17 16 14 41 41 H 1.08006 * 120.17561 * 359.97438 * 23 22 4 42 42 H 1.08000 * 119.69868 * 180.26341 * 26 24 23 43 43 H 1.08002 * 120.02194 * 179.80757 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2380 1.1124 0.0000 4 6 3.5552 0.7589 -0.0006 5 6 4.7093 1.6678 -0.0002 6 8 5.8392 1.2162 -0.0004 7 7 4.5166 3.0016 0.0001 8 6 5.6676 3.9080 -0.0002 9 6 5.1760 5.3569 0.0009 10 1 4.5732 5.5353 0.8914 11 8 4.3842 5.5920 -1.1652 12 6 6.3780 6.3034 0.0000 13 7 5.9106 7.6865 0.1215 14 6 6.8140 8.7153 0.1423 15 1 7.8713 8.5070 0.0695 16 6 6.3711 10.0259 0.2568 17 7 5.0827 10.2797 0.3450 18 14 7.6036 11.4293 0.2844 19 1 7.8525 11.8968 -1.1028 20 1 7.0603 12.5492 1.0943 21 1 8.8776 10.9574 0.8839 22 6 3.5927 -0.7150 -0.0003 23 6 4.6192 -1.6565 -0.0011 24 6 4.3118 -3.0013 -0.0011 25 9 5.3038 -3.9183 -0.0013 26 6 2.9858 -3.4162 0.0042 27 6 1.9623 -2.4942 0.0000 28 6 2.2528 -1.1336 -0.0005 29 1 -0.3632 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 1.8668 2.1267 0.0004 33 1 3.6159 3.3616 0.0005 34 1 6.2713 3.7289 0.8896 35 1 6.2707 3.7293 -0.8904 36 1 4.8575 5.4520 -1.9967 37 1 7.0290 6.0648 0.8411 38 1 6.9312 6.1873 -0.9320 39 1 4.9610 7.8735 0.1872 40 1 4.7731 11.1955 0.4247 41 1 5.6504 -1.3353 -0.0025 42 1 2.7553 -4.4713 0.0085 43 1 0.9349 -2.8272 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496995881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:01 Heat of formation + Delta-G solvation = -84.751276 kcal Electronic energy + Delta-G solvation = -27347.784285 eV Core-core repulsion = 23114.195155 eV Total energy + Delta-G solvation = -4233.589130 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.85779 -42.58195 -40.43942 -38.82301 -37.93628 -36.06943 -35.23778 -34.01269 -33.18309 -31.22780 -30.86819 -29.85059 -27.89522 -26.70662 -24.64718 -24.15718 -23.22331 -22.74395 -22.34985 -20.76484 -19.28583 -18.94936 -18.43403 -17.67291 -17.53264 -17.17114 -16.84276 -16.74622 -16.44979 -16.29581 -16.23300 -15.95876 -15.59322 -15.42693 -15.10146 -14.88951 -14.39478 -14.20784 -14.16647 -13.88712 -13.81085 -13.65277 -13.57562 -13.21028 -13.17051 -12.95212 -12.75128 -12.15636 -12.07427 -12.05839 -11.95694 -11.79914 -11.20062 -10.98191 -10.83224 -10.78711 -10.13204 -9.30182 -9.00561 -8.77889 -7.94816 -5.23880 -0.19403 0.27016 0.89239 1.48171 1.49662 1.58142 1.66339 2.16013 2.31122 2.56828 2.71422 3.22339 3.36627 3.50228 3.52345 3.61053 3.66201 3.76156 3.97804 4.03553 4.19558 4.23911 4.29447 4.40656 4.41362 4.52026 4.53101 4.64079 4.66911 4.78422 4.81527 4.93422 4.95564 5.13856 5.17537 5.23207 5.38187 5.42777 5.49003 5.56938 5.97194 6.12923 6.26778 6.61334 6.81027 7.29912 7.33981 8.08961 8.32724 9.28319 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.001922 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.343923 B =14566.170866 C =15606.603368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.460 5.460 3 C 0.151 3.849 4 C -0.274 4.274 5 C 0.585 3.415 6 O -0.595 6.595 7 N -0.707 5.707 8 C 0.104 3.896 9 C 0.112 3.888 10 H 0.104 0.896 11 O -0.560 6.560 12 C 0.121 3.879 13 N -0.739 5.739 14 C -0.248 4.248 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.967 5.967 18 Si 0.974 3.026 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.270 1.270 22 C -0.065 4.065 23 C -0.132 4.132 24 C 0.064 3.936 25 F -0.151 7.151 26 C -0.135 4.135 27 C -0.074 4.074 28 C 0.068 3.932 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.220 0.780 33 H 0.414 0.586 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.385 0.615 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.377 0.623 40 H 0.252 0.748 41 H 0.115 0.885 42 H 0.169 0.831 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 -28.446 -1.429 32.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.139 5.139 3 C 0.016 3.984 4 C -0.284 4.284 5 C 0.376 3.624 6 O -0.477 6.477 7 N -0.359 5.359 8 C -0.021 4.021 9 C 0.052 3.948 10 H 0.122 0.878 11 O -0.367 6.367 12 C -0.006 4.006 13 N -0.382 5.382 14 C -0.380 4.380 15 H 0.093 0.907 16 C -0.268 4.268 17 N -0.617 5.617 18 Si 0.803 3.197 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.195 1.195 22 C -0.070 4.070 23 C -0.152 4.152 24 C 0.044 3.956 25 F -0.130 7.130 26 C -0.154 4.154 27 C -0.094 4.094 28 C -0.037 4.037 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.236 0.764 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.133 0.867 42 H 0.186 0.814 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.642 -28.593 -0.984 32.606 hybrid contribution 1.221 1.048 -0.285 1.634 sum -14.421 -27.545 -1.269 31.118 Atomic orbital electron populations 1.22553 0.72930 1.06980 1.05363 1.43946 1.08240 1.03053 1.58636 1.22687 0.88422 0.93412 0.93862 1.19881 0.93054 0.91701 1.23770 1.17541 0.87876 0.81922 0.75092 1.90752 1.26176 1.77554 1.53232 1.45510 1.10602 1.04573 1.75182 1.21817 0.88818 0.88482 1.02993 1.22056 0.92440 0.90609 0.89721 0.87808 1.86532 1.41486 1.92341 1.16331 1.21413 0.95536 0.84729 0.98948 1.42401 1.06211 1.00910 1.88666 1.19634 0.90187 0.87082 1.41110 0.90717 1.25584 0.97765 0.99868 1.03565 1.69822 1.13919 1.19189 1.58772 0.85130 0.78334 0.78920 0.77303 1.21386 1.22101 1.19539 1.18688 0.92656 0.92087 1.03550 1.20494 0.99890 0.91213 1.03558 1.17658 0.86082 0.85357 1.06472 1.91456 1.61354 1.65785 1.94392 1.21088 0.89047 1.02185 1.03106 1.20260 1.01177 0.87255 1.00717 1.18460 0.88918 0.89744 1.06563 0.89042 0.87049 0.87836 0.76396 0.74885 0.90998 0.91187 0.76609 0.95026 0.95218 0.79017 0.93964 0.86680 0.81401 0.80806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 10.99 127.77 1.40 1.43 16 2 N -0.46 -4.75 3.15 -538.57 -1.69 -6.44 16 3 C 0.15 1.93 10.76 83.70 0.90 2.83 16 4 C -0.27 -6.21 6.27 -19.02 -0.12 -6.32 16 5 C 0.59 16.44 7.79 86.51 0.67 17.11 16 6 O -0.59 -22.12 16.16 -4.29 -0.07 -22.19 16 7 N -0.71 -16.08 5.44 -466.86 -2.54 -18.62 16 8 C 0.10 2.68 5.34 86.38 0.46 3.15 16 9 C 0.11 3.23 3.09 30.59 0.09 3.32 16 10 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 11 O -0.56 -16.04 13.03 -148.98 -1.94 -17.99 16 12 C 0.12 4.58 5.90 86.38 0.51 5.08 16 13 N -0.74 -36.97 5.55 -343.46 -1.91 -38.88 16 14 C -0.25 -13.85 9.99 84.04 0.84 -13.01 16 15 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 16 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 17 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 18 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 C -0.07 -1.58 6.26 -20.08 -0.13 -1.70 16 23 C -0.13 -3.56 9.83 22.45 0.22 -3.34 16 24 C 0.06 1.44 7.29 22.37 0.16 1.61 16 25 F -0.15 -3.70 17.26 44.97 0.78 -2.92 16 26 C -0.13 -1.94 9.99 22.33 0.22 -1.71 16 27 C -0.07 -0.83 9.91 22.37 0.22 -0.61 16 28 C 0.07 1.09 6.79 38.90 0.26 1.35 16 29 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.11 -0.33 8.13 -2.39 -0.02 -0.35 16 31 H 0.10 -0.25 8.03 -2.39 -0.02 -0.27 16 32 H 0.22 0.97 7.38 -2.91 -0.02 0.95 16 33 H 0.41 7.05 7.23 -92.71 -0.67 6.38 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.39 9.14 9.04 -74.06 -0.67 8.47 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.38 20.26 7.67 -92.70 -0.71 19.55 16 40 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.12 3.67 7.45 -2.91 -0.02 3.65 16 42 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 43 H 0.17 0.44 8.01 -2.91 -0.02 0.41 16 Total: -1.00 -82.65 376.19 0.17 -82.48 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.97 Total: 29.84 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 6.20 Total: 5.31 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -5.85 Total: -122.67 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -2.01 Total: -40.17 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -82.65 0.17 -82.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496995881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.272 kcal (2) G-P(sol) polarization free energy of solvation -82.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds