Wall clock time and date at job start Tue Mar 31 2020 18:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35455 * 124.79295 * 2 1 4 4 C 1.36385 * 109.77491 * 180.02562 * 3 2 1 5 5 C 1.46897 * 126.76109 * 179.97438 * 4 3 2 6 6 O 1.21669 * 119.99926 * 180.02562 * 5 4 3 7 7 N 1.34783 * 120.00002 * 0.03771 * 5 4 3 8 8 C 1.46501 * 119.99664 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46770 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.47542 * 305.00361 * 9 8 7 11 11 O 1.42909 * 109.47206 * 65.00183 * 9 8 7 12 12 C 1.53001 * 109.47204 * 184.99861 * 9 8 7 13 13 N 1.46497 * 109.47565 * 180.02562 * 12 9 8 14 14 C 1.36936 * 120.00356 * 180.02562 * 13 12 9 15 15 H 1.07994 * 119.99627 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99926 * 180.02562 * 14 13 12 17 17 N 1.31612 * 119.99962 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99762 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47058 * 59.99425 * 18 16 14 20 20 H 1.48494 * 109.46788 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46708 * 299.99527 * 18 16 14 22 22 C 1.47446 * 106.47469 * 0.02562 * 4 3 2 23 23 C 1.39286 * 133.98115 * 179.97438 * 22 4 3 24 24 C 1.37949 * 119.65223 * 180.02562 * 23 22 4 25 25 F 1.35095 * 119.87730 * 180.02562 * 24 23 22 26 26 C 1.38947 * 120.24713 * 359.68719 * 24 23 22 27 27 C 1.37756 * 120.60801 * 0.61837 * 26 24 23 28 28 C 1.38050 * 124.79729 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46994 * 269.97263 * 1 2 3 30 30 H 1.08994 * 109.47578 * 29.97354 * 1 2 3 31 31 H 1.09005 * 109.47224 * 149.97827 * 1 2 3 32 32 H 1.08005 * 125.10807 * 0.04621 * 3 2 1 33 33 H 0.96999 * 119.99942 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47520 * 300.00062 * 8 7 5 35 35 H 1.08997 * 109.47199 * 60.00159 * 8 7 5 36 36 H 0.96696 * 113.99719 * 59.99879 * 11 9 8 37 37 H 1.09003 * 109.47090 * 300.00364 * 12 9 8 38 38 H 1.09006 * 109.47086 * 60.00057 * 12 9 8 39 39 H 0.97008 * 119.99634 * 359.97438 * 13 12 9 40 40 H 0.97005 * 120.00137 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.17061 * 0.02562 * 23 22 4 42 42 H 1.08000 * 119.69815 * 180.31675 * 26 24 23 43 43 H 1.08002 * 120.02194 * 179.68300 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5551 0.7590 -0.0006 5 6 4.7092 1.6678 -0.0013 6 8 5.8390 1.2164 -0.0022 7 7 4.5165 3.0018 -0.0007 8 6 5.6675 3.9081 -0.0020 9 6 5.1757 5.3569 -0.0002 10 1 4.4994 5.5121 -0.8408 11 8 4.4854 5.6242 1.2222 12 6 6.3723 6.3018 -0.1273 13 7 5.9015 7.6891 -0.1250 14 6 6.8000 8.7173 -0.2296 15 1 7.8556 8.5054 -0.3133 16 6 6.3538 10.0318 -0.2269 17 7 5.0673 10.2899 -0.1244 18 14 7.5795 11.4343 -0.3688 19 1 8.3266 11.3115 -1.6463 20 1 6.8543 12.7299 -0.3425 21 1 8.5319 11.3764 0.7691 22 6 3.5926 -0.7150 -0.0016 23 6 4.6191 -1.6564 -0.0029 24 6 4.3118 -3.0013 -0.0042 25 9 5.3038 -3.9183 -0.0050 26 6 2.9858 -3.4162 0.0025 27 6 1.9623 -2.4942 -0.0024 28 6 2.2527 -1.1336 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.8667 2.1267 0.0007 33 1 3.6157 3.3617 0.0006 34 1 6.2721 3.7290 0.8871 35 1 6.2696 3.7295 -0.8928 36 1 5.0276 5.5060 2.0140 37 1 7.0486 6.1467 0.7134 38 1 6.8989 6.0980 -1.0597 39 1 4.9532 7.8794 -0.0502 40 1 4.7555 11.2084 -0.1229 41 1 5.6502 -1.3352 -0.0030 42 1 2.7553 -4.4713 0.0066 43 1 0.9349 -2.8273 -0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496995882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:04 Heat of formation + Delta-G solvation = -56.752642 kcal Electronic energy + Delta-G solvation = -27342.498610 eV Core-core repulsion = 23110.123592 eV Total energy + Delta-G solvation = -4232.375018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.00123 -41.92752 -39.37819 -37.53103 -37.28473 -34.34834 -33.97482 -33.39031 -31.32085 -30.52179 -29.82495 -28.81400 -27.13657 -25.28833 -23.51493 -23.10632 -22.09887 -21.69674 -21.37504 -19.84046 -18.25138 -17.69706 -17.16911 -16.80903 -16.45113 -16.17251 -16.00170 -15.85917 -15.55942 -15.46989 -15.01882 -14.55344 -14.45475 -14.41871 -13.75909 -13.58546 -13.47436 -13.23407 -13.20001 -13.04919 -12.96785 -12.76911 -12.59928 -12.30709 -11.84815 -11.47220 -11.33618 -10.96470 -10.80912 -10.61954 -10.21109 -10.06785 -10.06023 -9.80846 -9.49340 -9.08091 -8.90369 -8.61556 -8.08573 -6.94652 -5.76935 -3.06442 0.50545 0.98783 1.65235 2.17543 3.13090 3.15097 3.43995 3.48233 3.49358 3.54324 3.94421 4.11261 4.14510 4.30369 4.52553 4.56016 4.61655 4.71172 4.77362 4.86336 4.89191 4.94032 5.01801 5.25268 5.27604 5.32132 5.55316 5.56421 5.62217 5.80323 5.85788 5.88620 5.96830 6.16405 6.19861 6.26182 6.42551 6.51779 6.63534 6.67494 6.68016 7.53001 7.67703 7.93795 8.27101 8.41421 9.53048 10.09695 10.45646 11.45340 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.001920 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.309016 B =14577.159062 C =15610.441631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.470 5.470 3 C 0.117 3.883 4 C -0.225 4.225 5 C 0.587 3.413 6 O -0.544 6.544 7 N -0.720 5.720 8 C 0.092 3.908 9 C 0.089 3.911 10 H 0.104 0.896 11 O -0.553 6.553 12 C 0.126 3.874 13 N -0.726 5.726 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.037 4.037 23 C -0.097 4.097 24 C 0.076 3.924 25 F -0.140 7.140 26 C -0.133 4.133 27 C -0.095 4.095 28 C 0.075 3.925 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.374 0.626 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.389 0.611 40 H 0.256 0.744 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.971 -27.608 0.697 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.151 5.151 3 C -0.015 4.015 4 C -0.235 4.235 5 C 0.375 3.625 6 O -0.422 6.422 7 N -0.371 5.371 8 C -0.032 4.032 9 C 0.029 3.971 10 H 0.121 0.879 11 O -0.358 6.358 12 C -0.003 4.003 13 N -0.371 5.371 14 C -0.375 4.375 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.042 4.042 23 C -0.116 4.116 24 C 0.055 3.945 25 F -0.119 7.119 26 C -0.153 4.153 27 C -0.115 4.115 28 C -0.029 4.029 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.199 0.801 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.221 0.779 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.815 -27.721 0.270 30.541 hybrid contribution 0.473 0.875 0.278 1.033 sum -12.342 -26.846 0.548 29.552 Atomic orbital electron populations 1.22130 0.76102 1.04952 1.03790 1.43600 1.06578 1.04139 1.60785 1.22211 0.89730 0.91760 0.97768 1.20006 0.92231 0.92056 1.19231 1.17157 0.87744 0.81456 0.76126 1.90781 1.24084 1.76739 1.50638 1.45732 1.10354 1.05310 1.75752 1.22097 0.88420 0.89414 1.03289 1.22384 0.95806 0.90685 0.88179 0.87854 1.86556 1.41707 1.92117 1.15444 1.21200 0.93603 0.86553 0.98914 1.42220 1.07460 0.98671 1.88705 1.19181 0.89703 0.85868 1.42732 0.91249 1.24760 0.96026 0.97297 1.02811 1.69664 1.12231 1.18918 1.57072 0.86249 0.80109 0.81790 0.77910 1.21240 1.21670 1.21236 1.18411 0.91274 0.91670 1.02833 1.20604 1.00818 0.89858 1.00322 1.17369 0.84951 0.86076 1.06067 1.91494 1.60540 1.65610 1.94249 1.20764 0.90467 1.00386 1.03692 1.19792 0.99463 0.88439 1.03805 1.18249 0.89750 0.88343 1.06549 0.90481 0.89110 0.89599 0.80079 0.76510 0.90974 0.90351 0.77861 0.95890 0.95330 0.77673 0.93448 0.83519 0.84288 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 10.99 59.84 0.66 0.85 16 2 N -0.47 -3.25 3.15 -121.58 -0.38 -3.63 16 3 C 0.12 0.90 10.76 -16.62 -0.18 0.72 16 4 C -0.22 -2.55 6.27 -103.31 -0.65 -3.19 16 5 C 0.59 7.96 7.79 -12.75 -0.10 7.86 16 6 O -0.54 -9.37 16.15 5.22 0.08 -9.28 16 7 N -0.72 -8.35 5.49 -61.55 -0.34 -8.69 16 8 C 0.09 1.20 5.31 -4.04 -0.02 1.18 16 9 C 0.09 1.33 3.09 -26.73 -0.08 1.24 16 10 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 11 O -0.55 -8.44 13.03 -35.23 -0.46 -8.90 16 12 C 0.13 2.41 5.92 -4.04 -0.02 2.39 16 13 N -0.73 -18.17 5.49 -59.91 -0.33 -18.50 16 14 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 18 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 C -0.04 -0.44 6.26 -104.95 -0.66 -1.10 16 23 C -0.10 -1.18 9.83 -39.30 -0.39 -1.57 16 24 C 0.08 0.81 7.29 -39.42 -0.29 0.52 16 25 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 26 C -0.13 -1.08 9.99 -39.49 -0.39 -1.47 16 27 C -0.09 -0.69 9.91 -39.43 -0.39 -1.08 16 28 C 0.08 0.68 6.79 -83.93 -0.57 0.11 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.11 8.13 -51.93 -0.42 -0.31 16 31 H 0.09 0.13 8.03 -51.93 -0.42 -0.28 16 32 H 0.18 0.78 7.38 -52.48 -0.39 0.39 16 33 H 0.40 3.73 7.35 -40.82 -0.30 3.43 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.37 4.84 9.04 45.56 0.41 5.25 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.39 10.39 7.54 -40.82 -0.31 10.08 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.15 1.96 7.45 -52.49 -0.39 1.57 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.54 8.01 -52.49 -0.42 0.12 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -36.31 376.19 -8.08 -44.40 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.74 Total: 11.55 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -3.33 Total: -0.96 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.32 Total: -58.27 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.37 Total: -18.18 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.31 -8.08 -44.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496995882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.354 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds