Wall clock time and date at job start Tue Mar 31 2020 18:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35455 * 124.79295 * 2 1 4 4 C 1.36385 * 109.77491 * 180.02562 * 3 2 1 5 5 C 1.46897 * 126.76109 * 179.97438 * 4 3 2 6 6 O 1.21669 * 119.99926 * 180.02562 * 5 4 3 7 7 N 1.34783 * 120.00002 * 0.03771 * 5 4 3 8 8 C 1.46501 * 119.99664 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46770 * 180.02562 * 8 7 5 10 10 H 1.08995 * 109.47542 * 305.00361 * 9 8 7 11 11 O 1.42909 * 109.47206 * 65.00183 * 9 8 7 12 12 C 1.53001 * 109.47204 * 184.99861 * 9 8 7 13 13 N 1.46497 * 109.47565 * 180.02562 * 12 9 8 14 14 C 1.36936 * 120.00356 * 180.02562 * 13 12 9 15 15 H 1.07994 * 119.99627 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99926 * 180.02562 * 14 13 12 17 17 N 1.31612 * 119.99962 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99762 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47058 * 59.99425 * 18 16 14 20 20 H 1.48494 * 109.46788 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46708 * 299.99527 * 18 16 14 22 22 C 1.47446 * 106.47469 * 0.02562 * 4 3 2 23 23 C 1.39286 * 133.98115 * 179.97438 * 22 4 3 24 24 C 1.37949 * 119.65223 * 180.02562 * 23 22 4 25 25 F 1.35095 * 119.87730 * 180.02562 * 24 23 22 26 26 C 1.38947 * 120.24713 * 359.68719 * 24 23 22 27 27 C 1.37756 * 120.60801 * 0.61837 * 26 24 23 28 28 C 1.38050 * 124.79729 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46994 * 269.97263 * 1 2 3 30 30 H 1.08994 * 109.47578 * 29.97354 * 1 2 3 31 31 H 1.09005 * 109.47224 * 149.97827 * 1 2 3 32 32 H 1.08005 * 125.10807 * 0.04621 * 3 2 1 33 33 H 0.96999 * 119.99942 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47520 * 300.00062 * 8 7 5 35 35 H 1.08997 * 109.47199 * 60.00159 * 8 7 5 36 36 H 0.96696 * 113.99719 * 59.99879 * 11 9 8 37 37 H 1.09003 * 109.47090 * 300.00364 * 12 9 8 38 38 H 1.09006 * 109.47086 * 60.00057 * 12 9 8 39 39 H 0.97008 * 119.99634 * 359.97438 * 13 12 9 40 40 H 0.97005 * 120.00137 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.17061 * 0.02562 * 23 22 4 42 42 H 1.08000 * 119.69815 * 180.31675 * 26 24 23 43 43 H 1.08002 * 120.02194 * 179.68300 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2379 1.1124 0.0000 4 6 3.5551 0.7590 -0.0006 5 6 4.7092 1.6678 -0.0013 6 8 5.8390 1.2164 -0.0022 7 7 4.5165 3.0018 -0.0007 8 6 5.6675 3.9081 -0.0020 9 6 5.1757 5.3569 -0.0002 10 1 4.4994 5.5121 -0.8408 11 8 4.4854 5.6242 1.2222 12 6 6.3723 6.3018 -0.1273 13 7 5.9015 7.6891 -0.1250 14 6 6.8000 8.7173 -0.2296 15 1 7.8556 8.5054 -0.3133 16 6 6.3538 10.0318 -0.2269 17 7 5.0673 10.2899 -0.1244 18 14 7.5795 11.4343 -0.3688 19 1 8.3266 11.3115 -1.6463 20 1 6.8543 12.7299 -0.3425 21 1 8.5319 11.3764 0.7691 22 6 3.5926 -0.7150 -0.0016 23 6 4.6191 -1.6564 -0.0029 24 6 4.3118 -3.0013 -0.0042 25 9 5.3038 -3.9183 -0.0050 26 6 2.9858 -3.4162 0.0025 27 6 1.9623 -2.4942 -0.0024 28 6 2.2527 -1.1336 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.8667 2.1267 0.0007 33 1 3.6157 3.3617 0.0006 34 1 6.2721 3.7290 0.8871 35 1 6.2696 3.7295 -0.8928 36 1 5.0276 5.5060 2.0140 37 1 7.0486 6.1467 0.7134 38 1 6.8989 6.0980 -1.0597 39 1 4.9532 7.8794 -0.0502 40 1 4.7555 11.2084 -0.1229 41 1 5.6502 -1.3352 -0.0030 42 1 2.7553 -4.4713 0.0066 43 1 0.9349 -2.8273 -0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496995882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:03 Heat of formation + Delta-G solvation = -84.550592 kcal Electronic energy + Delta-G solvation = -27343.704020 eV Core-core repulsion = 23110.123592 eV Total energy + Delta-G solvation = -4233.580428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.85805 -42.58253 -40.43756 -38.82416 -37.93692 -36.04942 -35.25544 -34.01406 -33.16910 -31.22917 -30.86876 -29.84924 -27.89399 -26.70435 -24.64604 -24.15845 -23.21807 -22.74555 -22.34824 -20.76283 -19.28221 -18.94710 -18.43522 -17.67030 -17.53422 -17.17087 -16.83754 -16.74674 -16.45235 -16.29593 -16.23110 -15.95410 -15.59832 -15.42273 -15.10334 -14.89662 -14.39271 -14.20457 -14.14637 -13.89331 -13.80842 -13.67048 -13.56683 -13.20668 -13.16900 -12.94482 -12.71672 -12.19734 -12.07553 -12.05843 -11.95729 -11.79131 -11.20782 -10.96857 -10.82154 -10.78759 -10.13347 -9.30230 -9.00053 -8.77939 -7.94151 -5.23291 -0.19456 0.26959 0.89180 1.48253 1.51124 1.57253 1.66316 2.16249 2.31073 2.57198 2.71371 3.22284 3.36957 3.48891 3.52247 3.62070 3.66106 3.76096 3.97772 4.05354 4.19093 4.23620 4.29488 4.40812 4.41391 4.52095 4.53204 4.64108 4.66844 4.78425 4.81492 4.93377 4.95311 5.13791 5.17478 5.23032 5.38440 5.42871 5.49022 5.56875 5.97142 6.12891 6.27137 6.60964 6.80728 7.29693 7.34557 8.09841 8.33869 9.28678 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.001920 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.309016 B =14577.159062 C =15610.441631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.460 5.460 3 C 0.151 3.849 4 C -0.274 4.274 5 C 0.585 3.415 6 O -0.595 6.595 7 N -0.707 5.707 8 C 0.104 3.896 9 C 0.111 3.889 10 H 0.106 0.894 11 O -0.561 6.561 12 C 0.121 3.879 13 N -0.738 5.738 14 C -0.250 4.250 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.966 5.966 18 Si 0.974 3.026 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.278 1.278 22 C -0.065 4.065 23 C -0.132 4.132 24 C 0.064 3.936 25 F -0.151 7.151 26 C -0.135 4.135 27 C -0.074 4.074 28 C 0.068 3.932 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.220 0.780 33 H 0.414 0.586 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.385 0.615 37 H 0.029 0.971 38 H 0.032 0.968 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.115 0.885 42 H 0.169 0.831 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.781 -28.411 0.699 32.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.139 5.139 3 C 0.016 3.984 4 C -0.284 4.284 5 C 0.376 3.624 6 O -0.477 6.477 7 N -0.359 5.359 8 C -0.021 4.021 9 C 0.051 3.949 10 H 0.124 0.876 11 O -0.367 6.367 12 C -0.007 4.007 13 N -0.381 5.381 14 C -0.382 4.382 15 H 0.092 0.908 16 C -0.267 4.267 17 N -0.616 5.616 18 Si 0.803 3.197 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.204 1.204 22 C -0.070 4.070 23 C -0.152 4.152 24 C 0.044 3.956 25 F -0.130 7.130 26 C -0.154 4.154 27 C -0.094 4.094 28 C -0.037 4.037 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.236 0.764 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.133 0.867 42 H 0.186 0.814 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.649 -28.564 0.278 32.571 hybrid contribution 1.265 1.040 0.291 1.663 sum -14.384 -27.524 0.569 31.061 Atomic orbital electron populations 1.22553 0.72932 1.06981 1.05364 1.43944 1.08240 1.03054 1.58634 1.22690 0.88418 0.93421 0.93860 1.19883 0.93060 0.91703 1.23773 1.17541 0.87876 0.81926 0.75082 1.90749 1.26183 1.77551 1.53215 1.45529 1.10569 1.04603 1.75209 1.21826 0.88807 0.88475 1.02963 1.22066 0.94008 0.90458 0.88327 0.87629 1.86534 1.42087 1.92180 1.15918 1.21404 0.95523 0.84729 0.99029 1.42378 1.06615 1.00479 1.88678 1.19599 0.90433 0.86899 1.41240 0.90754 1.25582 0.97762 0.99822 1.03555 1.69817 1.13997 1.18975 1.58859 0.85206 0.77941 0.78387 0.78169 1.20432 1.22059 1.20449 1.18689 0.92657 0.92089 1.03548 1.20493 0.99890 0.91214 1.03561 1.17659 0.86082 0.85357 1.06469 1.91456 1.61352 1.65786 1.94392 1.21089 0.89046 1.02185 1.03105 1.20260 1.01177 0.87255 1.00715 1.18461 0.88918 0.89746 1.06564 0.89049 0.87034 0.87841 0.76373 0.74923 0.91262 0.90923 0.76664 0.95338 0.95003 0.78933 0.93961 0.86684 0.81400 0.80805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 10.99 127.77 1.40 1.43 16 2 N -0.46 -4.74 3.15 -538.57 -1.69 -6.44 16 3 C 0.15 1.92 10.76 83.70 0.90 2.82 16 4 C -0.27 -6.21 6.27 -19.02 -0.12 -6.33 16 5 C 0.59 16.45 7.79 86.51 0.67 17.12 16 6 O -0.59 -22.12 16.15 -4.25 -0.07 -22.19 16 7 N -0.71 -16.09 5.49 -466.87 -2.56 -18.65 16 8 C 0.10 2.69 5.31 86.38 0.46 3.15 16 9 C 0.11 3.22 3.09 30.59 0.09 3.31 16 10 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 11 O -0.56 -16.45 13.03 -148.98 -1.94 -18.39 16 12 C 0.12 4.56 5.92 86.38 0.51 5.07 16 13 N -0.74 -36.94 5.49 -343.45 -1.89 -38.83 16 14 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 15 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 16 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 17 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 18 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 C -0.07 -1.58 6.26 -20.08 -0.13 -1.70 16 23 C -0.13 -3.57 9.83 22.45 0.22 -3.35 16 24 C 0.06 1.44 7.29 22.37 0.16 1.61 16 25 F -0.15 -3.70 17.26 44.97 0.78 -2.93 16 26 C -0.13 -1.94 9.99 22.33 0.22 -1.71 16 27 C -0.07 -0.83 9.91 22.37 0.22 -0.61 16 28 C 0.07 1.08 6.79 38.90 0.26 1.35 16 29 H 0.09 -0.13 8.14 -2.38 -0.02 -0.15 16 30 H 0.11 -0.34 8.13 -2.39 -0.02 -0.36 16 31 H 0.10 -0.25 8.03 -2.38 -0.02 -0.27 16 32 H 0.22 0.95 7.38 -2.91 -0.02 0.93 16 33 H 0.41 6.98 7.35 -92.71 -0.68 6.30 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.38 9.54 9.04 -74.06 -0.67 8.87 16 37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.38 20.31 7.54 -92.70 -0.70 19.61 16 40 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 41 H 0.12 3.67 7.45 -2.91 -0.02 3.65 16 42 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.17 0.44 8.01 -2.91 -0.02 0.41 16 Total: -1.00 -82.67 376.19 0.16 -82.51 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.97 Total: 30.27 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 6.20 Total: 5.24 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -5.86 Total: -122.60 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -2.01 Total: -40.58 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -82.67 0.16 -82.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496995882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.037 kcal (2) G-P(sol) polarization free energy of solvation -82.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds