Wall clock time and date at job start Tue Mar 31 2020 18:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 120.00309 * 2 1 4 4 N 1.34777 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.39558 * 119.99808 * 185.52429 * 4 2 1 6 6 C 1.39067 * 119.93512 * 24.87462 * 5 4 2 7 7 C 1.37694 * 120.10131 * 179.97438 * 6 5 4 8 8 C 1.39732 * 119.97101 * 0.02562 * 7 6 5 9 9 C 1.47601 * 120.06984 * 179.97438 * 8 7 6 10 10 O 1.21581 * 119.99471 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99489 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47065 * 180.02562 * 12 11 9 14 14 C 1.30997 * 119.99981 * 124.99787 * 13 12 11 15 15 C 1.50697 * 120.00055 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46905 * 125.00321 * 15 14 13 17 17 C 1.36936 * 120.00106 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00478 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99739 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00660 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47110 * 60.00044 * 21 19 17 23 23 H 1.48490 * 109.47478 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47120 * 300.00644 * 21 19 17 25 25 C 1.39752 * 119.86684 * 0.25237 * 8 7 6 26 26 C 1.37874 * 119.89456 * 359.46341 * 25 8 7 27 27 F 1.35098 * 119.98380 * 180.25196 * 26 25 8 28 28 H 1.08999 * 109.47666 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47411 * 299.99957 * 1 2 3 30 30 H 1.09008 * 109.47327 * 59.99693 * 1 2 3 31 31 H 0.96998 * 120.00016 * 5.52430 * 4 2 1 32 32 H 1.08001 * 119.94521 * 359.97438 * 6 5 4 33 33 H 1.08003 * 120.01359 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00180 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47564 * 299.99939 * 12 11 9 36 36 H 1.09003 * 109.47128 * 60.00853 * 12 11 9 37 37 H 1.07994 * 119.99736 * 305.00628 * 13 12 11 38 38 H 1.08000 * 119.99904 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.47356 * 245.00589 * 15 14 13 40 40 H 1.08996 * 109.46933 * 5.00844 * 15 14 13 41 41 H 0.97005 * 120.00102 * 0.02562 * 16 15 14 42 42 H 0.97000 * 120.00345 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.05122 * 179.73108 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5715 -1.1701 0.1158 6 6 4.2186 -0.1041 0.7314 7 6 5.5905 -0.1036 0.8485 8 6 6.3342 -1.1753 0.3478 9 6 7.8050 -1.1768 0.4716 10 8 8.3707 -0.2446 1.0094 11 7 8.5209 -2.2116 -0.0114 12 6 9.9808 -2.2127 0.1111 13 6 10.5355 -3.4717 -0.5040 14 6 11.4488 -3.3960 -1.4400 15 6 12.0040 -4.6550 -2.0547 16 7 11.8425 -4.6003 -3.5097 17 6 12.2770 -5.6410 -4.2865 18 1 12.7384 -6.5022 -3.8264 19 6 12.1236 -5.5895 -5.6651 20 7 11.5608 -4.5400 -6.2258 21 14 12.7157 -7.0093 -6.7246 22 1 12.0036 -8.2515 -6.3306 23 1 12.4382 -6.7108 -8.1525 24 1 14.1766 -7.1944 -6.5329 25 6 5.6831 -2.2432 -0.2757 26 6 4.3087 -2.2408 -0.3848 27 9 3.6770 -3.2746 -0.9827 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6992 -2.0052 -0.0818 32 1 3.6441 0.7247 1.1181 33 1 6.0916 0.7252 1.3264 34 1 8.0696 -2.9551 -0.4407 35 1 10.3896 -1.3451 -0.4069 36 1 10.2571 -2.1704 1.1647 37 1 10.1800 -4.4363 -0.1731 38 1 11.8045 -2.4314 -1.7707 39 1 13.0624 -4.7429 -1.8096 40 1 11.4671 -5.5184 -1.6618 41 1 11.4284 -3.8266 -3.9231 42 1 11.4539 -4.5038 -7.1892 43 1 6.2553 -3.0710 -0.6677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497769299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:30 Heat of formation + Delta-G solvation = -55.894783 kcal Electronic energy + Delta-G solvation = -26673.567324 eV Core-core repulsion = 22441.229505 eV Total energy + Delta-G solvation = -4232.337819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.33919 -41.11263 -40.08301 -38.25721 -36.31723 -35.40174 -34.78390 -32.96838 -31.69383 -30.96762 -30.56479 -29.32982 -27.14398 -24.74362 -24.04854 -23.04275 -21.89692 -21.44155 -20.69121 -19.66710 -18.88729 -17.98758 -17.63585 -17.12698 -16.85399 -16.49612 -16.03753 -15.76486 -15.67478 -15.35568 -14.91454 -14.78986 -14.53513 -14.12698 -13.91676 -13.67560 -13.52774 -13.32547 -13.27957 -13.16009 -12.85148 -12.73714 -12.52114 -12.17107 -11.97695 -11.86077 -11.11094 -11.04835 -10.82139 -10.66579 -10.50540 -10.16931 -10.09660 -9.81696 -9.34403 -9.31433 -9.03232 -8.76027 -8.59306 -6.96796 -5.79308 -3.09190 0.24653 0.75084 1.87088 2.23111 2.33830 2.59947 3.22226 3.42527 3.42691 3.46810 3.48141 3.65504 4.01844 4.24149 4.44162 4.50798 4.57963 4.67257 4.77009 4.82150 4.95185 4.96689 5.20921 5.23437 5.34026 5.51070 5.53274 5.58533 5.63049 5.76411 5.80880 5.92574 5.99211 6.11275 6.25009 6.39342 6.44856 6.54898 6.65785 6.87368 7.11814 7.36681 7.41041 7.66136 8.04193 8.38885 9.50063 10.06211 10.41424 11.43248 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.001958 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.824687 B =14298.646851 C =15812.464155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.512 3.488 3 O -0.518 6.518 4 N -0.668 5.668 5 C 0.141 3.859 6 C -0.117 4.117 7 C -0.044 4.044 8 C -0.124 4.124 9 C 0.560 3.440 10 O -0.537 6.537 11 N -0.717 5.717 12 C 0.155 3.845 13 C -0.204 4.204 14 C -0.104 4.104 15 C 0.172 3.828 16 N -0.729 5.729 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.096 4.096 26 C 0.060 3.940 27 F -0.133 7.133 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.417 0.583 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.516 7.028 17.768 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.302 3.698 3 O -0.393 6.393 4 N -0.313 5.313 5 C 0.044 3.956 6 C -0.137 4.137 7 C -0.064 4.064 8 C -0.128 4.128 9 C 0.346 3.654 10 O -0.415 6.415 11 N -0.369 5.369 12 C 0.033 3.967 13 C -0.224 4.224 14 C -0.123 4.123 15 C 0.045 3.955 16 N -0.374 5.374 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.116 4.116 26 C 0.039 3.961 27 F -0.112 7.112 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.254 0.746 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.700 8.270 18.071 30.170 hybrid contribution -0.383 -1.688 -1.305 2.167 sum -23.083 6.583 16.767 29.279 Atomic orbital electron populations 1.21874 0.89971 1.04924 1.06101 1.21124 0.91166 0.82745 0.74813 1.90734 1.70199 1.31215 1.47107 1.43587 1.04816 1.10834 1.72059 1.17975 0.83505 0.95667 0.98426 1.21305 0.94515 0.98742 0.99108 1.21272 0.92720 0.97050 0.95339 1.19807 0.93549 0.96086 1.03394 1.18024 0.86352 0.82418 0.78558 1.90791 1.71877 1.35069 1.43733 1.45990 1.08051 1.22762 1.60088 1.20364 0.78488 0.96854 1.00990 1.22686 1.01034 0.97692 1.00956 1.23353 0.95296 1.00371 0.93318 1.19833 0.97398 0.92108 0.86173 1.42288 1.73275 1.22498 0.99323 1.19195 1.32404 0.97240 0.88625 0.91113 1.24772 1.01525 0.97980 0.96668 1.69658 1.49005 1.29226 1.10179 0.86229 0.78464 0.81654 0.79596 1.21219 1.21642 1.21192 1.21169 0.92181 0.99379 0.98881 1.17124 0.90373 0.87157 1.01477 1.91514 1.82117 1.56124 1.81443 0.90070 0.87915 0.87967 0.74604 0.82163 0.83404 0.76174 0.90919 0.90794 0.86697 0.87194 0.95098 0.95654 0.78124 0.93378 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.40 10.39 36.00 0.37 -0.03 16 2 C 0.51 3.49 7.74 -10.99 -0.09 3.41 16 3 O -0.52 -5.63 14.24 5.55 0.08 -5.55 16 4 N -0.67 -4.27 5.29 -9.81 -0.05 -4.32 16 5 C 0.14 1.28 6.44 -83.64 -0.54 0.74 16 6 C -0.12 -1.13 8.69 -39.47 -0.34 -1.48 16 7 C -0.04 -0.46 9.58 -39.22 -0.38 -0.83 16 8 C -0.12 -1.36 5.88 -104.95 -0.62 -1.97 16 9 C 0.56 7.25 7.76 -12.44 -0.10 7.15 16 10 O -0.54 -8.61 16.34 5.29 0.09 -8.53 16 11 N -0.72 -8.38 5.50 -62.50 -0.34 -8.72 16 12 C 0.16 1.93 6.11 -5.19 -0.03 1.90 16 13 C -0.20 -2.71 9.24 -36.02 -0.33 -3.04 16 14 C -0.10 -1.66 9.24 -36.03 -0.33 -1.99 16 15 C 0.17 3.41 6.70 -5.19 -0.03 3.37 16 16 N -0.73 -18.53 5.59 -61.09 -0.34 -18.87 16 17 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C -0.10 -0.92 9.51 -39.15 -0.37 -1.29 16 26 C 0.06 0.57 7.29 -39.32 -0.29 0.28 16 27 F -0.13 -1.24 16.79 2.25 0.04 -1.20 16 28 H 0.08 0.01 7.92 -51.93 -0.41 -0.41 16 29 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.10 0.21 8.14 -51.92 -0.42 -0.21 16 31 H 0.42 1.49 8.28 -40.82 -0.34 1.15 16 32 H 0.16 1.58 5.77 -52.49 -0.30 1.28 16 33 H 0.15 1.49 7.64 -52.48 -0.40 1.09 16 34 H 0.40 3.96 6.48 -40.82 -0.26 3.70 16 35 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.12 1.43 7.84 -52.49 -0.41 1.01 16 38 H 0.11 1.73 7.84 -52.49 -0.41 1.32 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 41 H 0.39 10.31 7.66 -40.82 -0.31 10.00 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 43 H 0.15 1.16 6.39 -52.49 -0.34 0.82 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -35.53 377.85 -7.69 -43.23 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.23 Total: 9.77 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.32 Total: -1.25 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.01 Total: -59.48 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.17 Total: -14.08 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.53 -7.69 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497769299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.668 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds