Wall clock time and date at job start Tue Mar 31 2020 18:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 120.00309 * 2 1 4 4 N 1.34777 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.39558 * 119.99808 * 185.52429 * 4 2 1 6 6 C 1.39067 * 119.93512 * 24.87462 * 5 4 2 7 7 C 1.37694 * 120.10131 * 179.97438 * 6 5 4 8 8 C 1.39732 * 119.97101 * 0.02562 * 7 6 5 9 9 C 1.47601 * 120.06984 * 179.97438 * 8 7 6 10 10 O 1.21581 * 119.99471 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99489 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.47065 * 180.02562 * 12 11 9 14 14 C 1.30997 * 119.99981 * 124.99787 * 13 12 11 15 15 C 1.50697 * 120.00055 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46905 * 125.00321 * 15 14 13 17 17 C 1.36936 * 120.00106 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00478 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99739 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00660 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47110 * 60.00044 * 21 19 17 23 23 H 1.48490 * 109.47478 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47120 * 300.00644 * 21 19 17 25 25 C 1.39752 * 119.86684 * 0.25237 * 8 7 6 26 26 C 1.37874 * 119.89456 * 359.46341 * 25 8 7 27 27 F 1.35098 * 119.98380 * 180.25196 * 26 25 8 28 28 H 1.08999 * 109.47666 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47411 * 299.99957 * 1 2 3 30 30 H 1.09008 * 109.47327 * 59.99693 * 1 2 3 31 31 H 0.96998 * 120.00016 * 5.52430 * 4 2 1 32 32 H 1.08001 * 119.94521 * 359.97438 * 6 5 4 33 33 H 1.08003 * 120.01359 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00180 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47564 * 299.99939 * 12 11 9 36 36 H 1.09003 * 109.47128 * 60.00853 * 12 11 9 37 37 H 1.07994 * 119.99736 * 305.00628 * 13 12 11 38 38 H 1.08000 * 119.99904 * 0.02562 * 14 13 12 39 39 H 1.09001 * 109.47356 * 245.00589 * 15 14 13 40 40 H 1.08996 * 109.46933 * 5.00844 * 15 14 13 41 41 H 0.97005 * 120.00102 * 0.02562 * 16 15 14 42 42 H 0.97000 * 120.00345 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.05122 * 179.73108 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5715 -1.1701 0.1158 6 6 4.2186 -0.1041 0.7314 7 6 5.5905 -0.1036 0.8485 8 6 6.3342 -1.1753 0.3478 9 6 7.8050 -1.1768 0.4716 10 8 8.3707 -0.2446 1.0094 11 7 8.5209 -2.2116 -0.0114 12 6 9.9808 -2.2127 0.1111 13 6 10.5355 -3.4717 -0.5040 14 6 11.4488 -3.3960 -1.4400 15 6 12.0040 -4.6550 -2.0547 16 7 11.8425 -4.6003 -3.5097 17 6 12.2770 -5.6410 -4.2865 18 1 12.7384 -6.5022 -3.8264 19 6 12.1236 -5.5895 -5.6651 20 7 11.5608 -4.5400 -6.2258 21 14 12.7157 -7.0093 -6.7246 22 1 12.0036 -8.2515 -6.3306 23 1 12.4382 -6.7108 -8.1525 24 1 14.1766 -7.1944 -6.5329 25 6 5.6831 -2.2432 -0.2757 26 6 4.3087 -2.2408 -0.3848 27 9 3.6770 -3.2746 -0.9827 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6992 -2.0052 -0.0818 32 1 3.6441 0.7247 1.1181 33 1 6.0916 0.7252 1.3264 34 1 8.0696 -2.9551 -0.4407 35 1 10.3896 -1.3451 -0.4069 36 1 10.2571 -2.1704 1.1647 37 1 10.1800 -4.4363 -0.1731 38 1 11.8045 -2.4314 -1.7707 39 1 13.0624 -4.7429 -1.8096 40 1 11.4671 -5.5184 -1.6618 41 1 11.4284 -3.8266 -3.9231 42 1 11.4539 -4.5038 -7.1892 43 1 6.2553 -3.0710 -0.6677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497769299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:30 Heat of formation + Delta-G solvation = -81.061484 kcal Electronic energy + Delta-G solvation = -26674.658634 eV Core-core repulsion = 22441.229505 eV Total energy + Delta-G solvation = -4233.429129 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.07736 -41.79792 -40.98553 -39.07241 -37.67334 -36.28426 -36.09100 -34.48939 -32.73186 -31.98767 -31.66721 -29.98964 -28.50646 -26.11871 -25.09626 -24.11491 -23.33960 -22.18267 -21.52118 -20.85954 -19.70140 -19.12047 -18.77105 -18.26331 -17.69403 -17.24089 -16.86357 -16.72784 -16.57022 -16.42444 -16.32108 -15.75885 -15.48959 -15.37296 -15.17014 -15.01241 -14.67159 -14.36718 -14.31008 -13.73051 -13.70203 -13.50209 -13.32531 -13.28396 -13.05530 -12.90027 -12.82114 -12.70311 -12.23943 -11.98922 -11.83043 -11.79695 -11.38440 -11.03669 -10.96428 -10.41860 -10.09829 -10.02079 -9.33014 -9.01375 -7.95965 -5.25969 -0.55092 -0.01320 1.04131 1.26010 1.48154 1.51301 1.57607 1.72246 1.85031 2.22886 2.57150 2.57903 2.89660 3.37643 3.42276 3.58391 3.67295 3.77201 3.90007 4.03638 4.10197 4.23962 4.29623 4.44119 4.47629 4.55715 4.63528 4.67594 4.71001 4.81346 4.87497 4.93083 5.01308 5.01893 5.10506 5.18625 5.26080 5.47406 5.64366 5.66023 5.83572 6.18966 6.25875 6.41130 6.90498 7.05976 7.31952 8.06478 8.30118 9.27243 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.001958 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.824687 B =14298.646851 C =15812.464155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.508 3.492 3 O -0.563 6.563 4 N -0.660 5.660 5 C 0.146 3.854 6 C -0.122 4.122 7 C -0.046 4.046 8 C -0.138 4.138 9 C 0.561 3.439 10 O -0.573 6.573 11 N -0.710 5.710 12 C 0.157 3.843 13 C -0.163 4.163 14 C -0.131 4.131 15 C 0.172 3.828 16 N -0.744 5.744 17 C -0.250 4.250 18 H 0.079 0.921 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.977 3.023 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.089 4.089 26 C 0.056 3.944 27 F -0.131 7.131 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.432 0.568 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.413 0.587 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.031 0.969 40 H 0.035 0.965 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.121 5.446 18.465 31.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.300 3.700 3 O -0.441 6.441 4 N -0.306 5.306 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.066 4.066 8 C -0.142 4.142 9 C 0.349 3.651 10 O -0.454 6.454 11 N -0.362 5.362 12 C 0.034 3.966 13 C -0.182 4.182 14 C -0.150 4.150 15 C 0.047 3.953 16 N -0.387 5.387 17 C -0.381 4.381 18 H 0.097 0.903 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.805 3.195 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.109 4.109 26 C 0.034 3.966 27 F -0.109 7.109 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.272 0.728 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.250 0.750 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.126 0.874 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -24.329 6.621 18.804 31.453 hybrid contribution 0.026 -1.184 -1.401 1.835 sum -24.303 5.436 17.403 30.382 Atomic orbital electron populations 1.21940 0.86141 1.07140 1.06800 1.22019 0.92870 0.81900 0.73224 1.90718 1.71426 1.32784 1.49154 1.43686 1.03792 1.11778 1.71294 1.18087 0.84900 0.95028 0.97220 1.21275 0.94212 0.99089 0.99669 1.21298 0.93076 0.96949 0.95255 1.19625 0.92379 0.97077 1.05099 1.18274 0.87108 0.81915 0.77801 1.90771 1.72689 1.36427 1.45532 1.45881 1.07674 1.22876 1.59736 1.20307 0.78929 0.95955 1.01412 1.22773 0.98325 0.98712 0.98370 1.23019 0.97768 0.98728 0.95478 1.19923 0.97724 0.94276 0.83391 1.42528 1.73035 1.21516 1.01628 1.19644 1.31322 0.97865 0.89285 0.90330 1.25633 1.02511 1.00664 0.98112 1.69823 1.50906 1.31324 1.09984 0.85161 0.78235 0.78796 0.77259 1.20107 1.22218 1.20338 1.21291 0.92464 0.99195 0.97957 1.17103 0.90364 0.87355 1.01762 1.91521 1.82027 1.55984 1.81418 0.87156 0.86863 0.87372 0.72831 0.82445 0.83767 0.74956 0.91894 0.89653 0.84978 0.87439 0.95172 0.94759 0.79429 0.93959 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.37 10.39 71.23 0.74 0.37 16 2 C 0.51 6.27 7.74 87.65 0.68 6.94 16 3 O -0.56 -12.16 14.24 -3.04 -0.04 -12.21 16 4 N -0.66 -7.37 5.29 -303.32 -1.60 -8.97 16 5 C 0.15 2.49 6.44 38.37 0.25 2.73 16 6 C -0.12 -2.37 8.69 22.34 0.19 -2.18 16 7 C -0.05 -0.97 9.58 22.50 0.22 -0.75 16 8 C -0.14 -2.94 5.88 -20.08 -0.12 -3.06 16 9 C 0.56 14.29 7.76 86.71 0.67 14.96 16 10 O -0.57 -18.56 16.34 -3.97 -0.06 -18.62 16 11 N -0.71 -15.61 5.50 -469.93 -2.58 -18.20 16 12 C 0.16 3.67 6.11 85.63 0.52 4.19 16 13 C -0.16 -3.99 9.24 25.65 0.24 -3.75 16 14 C -0.13 -4.06 9.24 25.65 0.24 -3.82 16 15 C 0.17 6.71 6.70 85.63 0.57 7.28 16 16 N -0.74 -37.87 5.59 -347.19 -1.94 -39.82 16 17 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 20 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 21 Si 0.98 45.85 29.55 68.60 2.03 47.87 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 C -0.09 -1.58 9.51 22.55 0.21 -1.37 16 26 C 0.06 0.97 7.29 22.44 0.16 1.13 16 27 F -0.13 -2.17 16.79 44.97 0.76 -1.42 16 28 H 0.11 -0.39 7.92 -2.39 -0.02 -0.40 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.43 2.07 8.28 -92.71 -0.77 1.30 16 32 H 0.16 3.19 5.77 -2.91 -0.02 3.17 16 33 H 0.14 3.06 7.64 -2.91 -0.02 3.03 16 34 H 0.41 7.30 6.48 -92.71 -0.60 6.70 16 35 H 0.06 1.64 7.79 -2.39 -0.02 1.63 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.13 2.85 7.84 -2.91 -0.02 2.83 16 38 H 0.11 3.39 7.84 -2.91 -0.02 3.37 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.03 1.28 7.79 -2.39 -0.02 1.26 16 41 H 0.37 20.35 7.66 -92.70 -0.71 19.64 16 42 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.16 2.24 6.39 -2.91 -0.02 2.22 16 Total: -1.00 -77.11 377.85 1.72 -75.38 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.99 Total: 29.65 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.89 Total: 5.64 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -5.85 Total: -126.30 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.11 Total: -30.83 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.76 Total: -1.42 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -77.11 1.72 -75.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497769299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.679 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds