Wall clock time and date at job start Tue Mar 31 2020 18:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99825 * 2 1 4 4 N 1.34771 * 120.00100 * 180.02562 * 2 1 3 5 5 C 1.39297 * 119.99860 * 184.55254 * 4 2 1 6 6 C 1.38772 * 120.15393 * 19.83785 * 5 4 2 7 7 C 1.38099 * 120.14229 * 180.26193 * 6 5 4 8 8 C 1.38437 * 120.44822 * 359.74198 * 7 6 5 9 9 C 1.38143 * 120.30027 * 359.97438 * 8 7 6 10 10 F 1.35102 * 120.07538 * 179.97438 * 9 8 7 11 11 C 1.39942 * 119.84894 * 0.02562 * 9 8 7 12 12 C 1.47375 * 120.21731 * 179.97438 * 11 9 8 13 13 O 1.21605 * 120.00064 * 89.99751 * 12 11 9 14 14 N 1.34775 * 119.99774 * 269.99217 * 12 11 9 15 15 C 1.46504 * 119.99853 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46784 * 174.96710 * 15 14 12 17 17 N 1.46499 * 115.55306 * 81.36509 * 16 15 14 18 18 C 1.36939 * 119.99908 * 65.33866 * 17 16 15 19 19 H 1.07996 * 120.00304 * 354.90415 * 18 17 16 20 20 C 1.38810 * 119.99863 * 174.63190 * 18 17 16 21 21 N 1.31625 * 120.00205 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00191 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47033 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47084 * 119.99545 * 22 20 18 25 25 H 1.48498 * 109.47458 * 240.00127 * 22 20 18 26 26 C 1.53004 * 117.50131 * 227.03289 * 16 15 14 27 27 C 1.52996 * 117.50224 * 295.69422 * 16 15 14 28 28 H 1.09009 * 109.46341 * 239.99711 * 1 2 3 29 29 H 1.09000 * 109.47465 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.47474 * 119.99869 * 1 2 3 31 31 H 0.96998 * 120.00044 * 4.54238 * 4 2 1 32 32 H 1.08002 * 119.93051 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.77666 * 179.72059 * 7 6 5 34 34 H 1.07996 * 119.84746 * 180.02562 * 8 7 6 35 35 H 0.96999 * 119.99974 * 0.02562 * 14 12 11 36 36 H 1.08995 * 109.46945 * 54.97188 * 15 14 12 37 37 H 1.08992 * 109.47271 * 294.96589 * 15 14 12 38 38 H 0.97004 * 120.00198 * 245.34847 * 17 16 15 39 39 H 0.97000 * 119.99843 * 179.97438 * 21 20 18 40 40 H 1.08994 * 117.49868 * 215.00451 * 26 16 15 41 41 H 1.09003 * 117.49108 * 0.02562 * 26 16 15 42 42 H 1.09005 * 117.49974 * 359.97438 * 27 16 15 43 43 H 1.09002 * 117.50303 * 144.97585 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5706 -1.1690 0.0952 6 6 4.2364 -0.0585 0.5944 7 6 5.6145 -0.0586 0.6841 8 6 6.3436 -1.1651 0.2834 9 6 5.6992 -2.2826 -0.2108 10 9 6.4153 -3.3598 -0.6010 11 6 4.3032 -2.2961 -0.3072 12 6 3.6075 -3.4838 -0.8337 13 8 3.2571 -4.3686 -0.0767 14 7 3.3597 -3.5894 -2.1543 15 6 2.6686 -4.7703 -2.6778 16 6 2.4029 -4.5846 -4.1731 17 7 3.5323 -4.8827 -5.0573 18 6 4.0126 -6.1619 -5.1469 19 1 3.6144 -6.9345 -4.5060 20 6 5.0076 -6.4669 -6.0656 21 7 5.4890 -5.5266 -6.8509 22 14 5.6635 -8.2117 -6.1874 23 1 4.9618 -9.0742 -5.2029 24 1 5.4292 -8.7340 -7.5577 25 1 7.1201 -8.2143 -5.8989 26 6 0.9987 -4.9092 -4.6868 27 6 1.4604 -3.4531 -4.5880 28 1 -0.3632 -0.5139 0.8901 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 1.6982 -2.0058 -0.0674 32 1 3.6760 0.8092 0.9097 33 1 6.1269 0.8106 1.0693 34 1 7.4209 -1.1548 0.3582 35 1 3.6395 -2.8837 -2.7582 36 1 1.7216 -4.8991 -2.1538 37 1 3.2907 -5.6523 -2.5261 38 1 3.9399 -4.1739 -5.5793 39 1 6.1845 -5.7397 -7.4925 40 1 0.9153 -5.3445 -5.6826 41 1 0.2642 -5.2546 -3.9593 42 1 1.0292 -2.8412 -3.7956 43 1 1.6809 -2.9302 -5.5186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499372187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:29 Heat of formation + Delta-G solvation = -43.309728 kcal Electronic energy + Delta-G solvation = -28998.773814 eV Core-core repulsion = 24766.981724 eV Total energy + Delta-G solvation = -4231.792090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.95585 -41.13931 -39.57486 -38.26191 -37.44138 -35.18722 -33.88330 -33.05340 -31.40900 -31.03177 -29.74503 -28.91166 -26.78149 -23.99294 -23.73481 -23.43506 -21.96883 -20.86628 -20.47653 -19.39187 -18.49173 -17.76261 -17.56775 -17.12965 -16.37332 -15.93992 -15.89971 -15.73297 -15.61716 -15.36260 -15.00697 -14.49489 -14.28601 -14.13466 -13.84367 -13.44191 -13.30377 -13.14134 -13.11907 -12.94650 -12.66728 -12.31925 -12.13721 -11.98888 -11.89531 -11.04594 -11.03744 -10.92918 -10.91499 -10.40963 -10.24400 -10.12635 -9.97756 -9.74696 -9.39833 -9.02040 -8.91573 -8.79556 -8.41986 -7.10990 -5.86273 -3.17475 0.70781 0.93856 2.15455 2.48662 2.60205 3.19092 3.39806 3.42653 3.46672 3.48249 4.07792 4.21390 4.33704 4.53215 4.60893 4.75353 4.80284 4.84805 4.93152 5.05976 5.11550 5.13562 5.22168 5.41142 5.42353 5.55028 5.63969 5.71086 5.74834 5.83701 5.99887 6.06401 6.11737 6.15036 6.34779 6.47550 6.56938 6.62335 6.65902 6.72772 6.91189 7.59873 7.64028 7.66857 8.25062 8.31334 9.42953 9.95216 10.30188 11.35544 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.003616 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.281390 B = 7742.571064 C = 9110.908738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.515 3.485 3 O -0.518 6.518 4 N -0.666 5.666 5 C 0.211 3.789 6 C -0.158 4.158 7 C -0.055 4.055 8 C -0.177 4.177 9 C 0.159 3.841 10 F -0.122 7.122 11 C -0.197 4.197 12 C 0.557 3.443 13 O -0.535 6.535 14 N -0.696 5.696 15 C 0.144 3.856 16 C 0.127 3.873 17 N -0.688 5.688 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.184 4.184 27 C -0.185 4.185 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.417 0.583 32 H 0.165 0.835 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.404 0.596 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.111 13.554 15.155 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.305 3.695 3 O -0.394 6.394 4 N -0.309 5.309 5 C 0.114 3.886 6 C -0.178 4.178 7 C -0.073 4.073 8 C -0.197 4.197 9 C 0.139 3.861 10 F -0.101 7.101 11 C -0.204 4.204 12 C 0.341 3.659 13 O -0.413 6.413 14 N -0.345 5.345 15 C 0.019 3.981 16 C 0.033 3.967 17 N -0.328 5.328 18 C -0.371 4.371 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.225 4.225 27 C -0.223 4.223 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.254 0.746 32 H 0.182 0.818 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.239 0.761 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.223 0.777 39 H 0.066 0.934 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.958 13.428 15.631 22.090 hybrid contribution 0.707 -1.201 -0.871 1.643 sum -7.251 12.227 14.760 20.493 Atomic orbital electron populations 1.21964 0.90033 1.06313 1.05104 1.21086 0.91169 0.82608 0.74667 1.90645 1.70122 1.31336 1.47278 1.43564 1.04981 1.10852 1.71484 1.17378 0.82721 0.93180 0.95317 1.21680 0.94842 0.99368 1.01903 1.21041 0.93335 0.97211 0.95745 1.21097 1.01418 0.92870 1.04319 1.17331 0.87217 0.84529 0.97042 1.91601 1.77356 1.53059 1.88044 1.19579 0.92865 0.97050 1.10865 1.17873 0.79525 0.85575 0.82940 1.90820 1.52394 1.40364 1.57677 1.46015 1.58102 1.23537 1.06800 1.21379 0.96228 0.87785 0.92713 1.20142 0.86467 1.00752 0.89371 1.41793 1.33443 1.08555 1.48989 1.19199 1.15742 0.86482 1.15689 0.90887 1.24762 0.99636 0.97758 0.98253 1.69670 1.31109 1.31741 1.25222 0.86114 0.78609 0.84102 0.77359 1.20367 1.21783 1.21754 1.23372 0.98954 0.97119 1.03051 1.23067 1.04742 0.91797 1.02688 0.88709 0.88165 0.88611 0.74630 0.81792 0.84264 0.84038 0.76144 0.91834 0.90223 0.77706 0.93417 0.88500 0.89914 0.89688 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.32 36.01 0.37 -0.51 16 2 C 0.52 4.77 7.79 -10.99 -0.09 4.68 16 3 O -0.52 -6.36 13.95 5.55 0.08 -6.28 16 4 N -0.67 -6.65 5.22 -9.69 -0.05 -6.70 16 5 C 0.21 2.58 6.51 -83.49 -0.54 2.04 16 6 C -0.16 -1.77 8.77 -39.43 -0.35 -2.11 16 7 C -0.05 -0.53 10.02 -39.56 -0.40 -0.93 16 8 C -0.18 -1.96 10.00 -39.54 -0.40 -2.36 16 9 C 0.16 2.28 7.29 -38.98 -0.28 2.00 16 10 F -0.12 -2.06 16.83 2.25 0.04 -2.02 16 11 C -0.20 -2.81 5.65 -104.76 -0.59 -3.40 16 12 C 0.56 9.08 5.74 -12.54 -0.07 9.01 16 13 O -0.53 -10.24 17.10 5.27 0.09 -10.15 16 14 N -0.70 -11.06 5.50 -61.40 -0.34 -11.40 16 15 C 0.14 2.51 5.74 -4.04 -0.02 2.49 16 16 C 0.13 2.33 2.15 -131.82 -0.28 2.05 16 17 N -0.69 -16.24 5.49 -47.23 -0.26 -16.50 16 18 C -0.24 -6.43 9.56 -15.06 -0.14 -6.58 16 19 H 0.07 1.94 7.77 -52.49 -0.41 1.53 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -27.36 13.07 55.49 0.73 -26.63 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 C -0.18 -3.02 10.11 -26.69 -0.27 -3.29 16 27 C -0.19 -2.77 10.13 -26.70 -0.27 -3.04 16 28 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.42 3.79 7.77 -40.82 -0.32 3.47 16 32 H 0.17 1.84 5.38 -52.49 -0.28 1.56 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.40 6.18 8.46 -40.82 -0.35 5.84 16 36 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 37 H 0.08 1.65 7.73 -51.93 -0.40 1.25 16 38 H 0.39 9.81 8.04 -40.82 -0.33 9.48 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -33.30 377.73 -7.91 -41.21 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.43 Total: 15.82 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -3.43 Total: -0.27 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.08 Total: -61.23 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.17 Total: -16.43 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.30 -7.91 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499372187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.099 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds