Wall clock time and date at job start Tue Mar 31 2020 18:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99825 * 2 1 4 4 N 1.34771 * 120.00100 * 180.02562 * 2 1 3 5 5 C 1.39297 * 119.99860 * 184.55254 * 4 2 1 6 6 C 1.38772 * 120.15393 * 19.83785 * 5 4 2 7 7 C 1.38099 * 120.14229 * 180.26193 * 6 5 4 8 8 C 1.38437 * 120.44822 * 359.74198 * 7 6 5 9 9 C 1.38143 * 120.30027 * 359.97438 * 8 7 6 10 10 F 1.35102 * 120.07538 * 179.97438 * 9 8 7 11 11 C 1.39942 * 119.84894 * 0.02562 * 9 8 7 12 12 C 1.47375 * 120.21731 * 179.97438 * 11 9 8 13 13 O 1.21605 * 120.00064 * 89.99751 * 12 11 9 14 14 N 1.34775 * 119.99774 * 269.99217 * 12 11 9 15 15 C 1.46504 * 119.99853 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46784 * 174.96710 * 15 14 12 17 17 N 1.46499 * 115.55306 * 81.36509 * 16 15 14 18 18 C 1.36939 * 119.99908 * 65.33866 * 17 16 15 19 19 H 1.07996 * 120.00304 * 354.90415 * 18 17 16 20 20 C 1.38810 * 119.99863 * 174.63190 * 18 17 16 21 21 N 1.31625 * 120.00205 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00191 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47033 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47084 * 119.99545 * 22 20 18 25 25 H 1.48498 * 109.47458 * 240.00127 * 22 20 18 26 26 C 1.53004 * 117.50131 * 227.03289 * 16 15 14 27 27 C 1.52996 * 117.50224 * 295.69422 * 16 15 14 28 28 H 1.09009 * 109.46341 * 239.99711 * 1 2 3 29 29 H 1.09000 * 109.47465 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.47474 * 119.99869 * 1 2 3 31 31 H 0.96998 * 120.00044 * 4.54238 * 4 2 1 32 32 H 1.08002 * 119.93051 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.77666 * 179.72059 * 7 6 5 34 34 H 1.07996 * 119.84746 * 180.02562 * 8 7 6 35 35 H 0.96999 * 119.99974 * 0.02562 * 14 12 11 36 36 H 1.08995 * 109.46945 * 54.97188 * 15 14 12 37 37 H 1.08992 * 109.47271 * 294.96589 * 15 14 12 38 38 H 0.97004 * 120.00198 * 245.34847 * 17 16 15 39 39 H 0.97000 * 119.99843 * 179.97438 * 21 20 18 40 40 H 1.08994 * 117.49868 * 215.00451 * 26 16 15 41 41 H 1.09003 * 117.49108 * 0.02562 * 26 16 15 42 42 H 1.09005 * 117.49974 * 359.97438 * 27 16 15 43 43 H 1.09002 * 117.50303 * 144.97585 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5706 -1.1690 0.0952 6 6 4.2364 -0.0585 0.5944 7 6 5.6145 -0.0586 0.6841 8 6 6.3436 -1.1651 0.2834 9 6 5.6992 -2.2826 -0.2108 10 9 6.4153 -3.3598 -0.6010 11 6 4.3032 -2.2961 -0.3072 12 6 3.6075 -3.4838 -0.8337 13 8 3.2571 -4.3686 -0.0767 14 7 3.3597 -3.5894 -2.1543 15 6 2.6686 -4.7703 -2.6778 16 6 2.4029 -4.5846 -4.1731 17 7 3.5323 -4.8827 -5.0573 18 6 4.0126 -6.1619 -5.1469 19 1 3.6144 -6.9345 -4.5060 20 6 5.0076 -6.4669 -6.0656 21 7 5.4890 -5.5266 -6.8509 22 14 5.6635 -8.2117 -6.1874 23 1 4.9618 -9.0742 -5.2029 24 1 5.4292 -8.7340 -7.5577 25 1 7.1201 -8.2143 -5.8989 26 6 0.9987 -4.9092 -4.6868 27 6 1.4604 -3.4531 -4.5880 28 1 -0.3632 -0.5139 0.8901 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 1.6982 -2.0058 -0.0674 32 1 3.6760 0.8092 0.9097 33 1 6.1269 0.8106 1.0693 34 1 7.4209 -1.1548 0.3582 35 1 3.6395 -2.8837 -2.7582 36 1 1.7216 -4.8991 -2.1538 37 1 3.2907 -5.6523 -2.5261 38 1 3.9399 -4.1739 -5.5793 39 1 6.1845 -5.7397 -7.4925 40 1 0.9153 -5.3445 -5.6826 41 1 0.2642 -5.2546 -3.9593 42 1 1.0292 -2.8412 -3.7956 43 1 1.6809 -2.9302 -5.5186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499372187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:28 Heat of formation + Delta-G solvation = -67.180182 kcal Electronic energy + Delta-G solvation = -28999.808915 eV Core-core repulsion = 24766.981724 eV Total energy + Delta-G solvation = -4232.827190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.12610 -42.03295 -40.74611 -39.33529 -38.77676 -36.01311 -35.39417 -34.85660 -32.30215 -31.81476 -31.67203 -29.62087 -28.09742 -25.97837 -24.82328 -24.28979 -23.26164 -21.69441 -21.66216 -20.83729 -19.47965 -19.17085 -18.76458 -18.54889 -17.51231 -17.13721 -16.97187 -16.82644 -16.68166 -16.49659 -16.14627 -16.01138 -15.55229 -15.42435 -15.02048 -14.96456 -14.66394 -14.32734 -13.87456 -13.73746 -13.58610 -13.46529 -13.26883 -12.98187 -12.93849 -12.88284 -12.86418 -12.29978 -12.20141 -12.02268 -11.77897 -11.62604 -11.36147 -10.99851 -10.88467 -10.64912 -10.19205 -10.00349 -9.30456 -9.05776 -7.98703 -5.27631 -0.21600 0.00558 1.24326 1.43323 1.44371 1.45016 1.53770 1.81484 1.99582 2.48050 2.50735 3.04679 3.10535 3.35836 3.49729 3.61117 3.62851 3.80189 3.83382 3.91660 4.15659 4.21308 4.25362 4.28573 4.50988 4.63340 4.65743 4.74162 4.80962 4.88907 4.89548 5.00710 5.02570 5.09337 5.17181 5.20417 5.26584 5.29179 5.40277 5.52964 5.77773 6.17546 6.24367 6.34369 6.88027 6.95851 7.30364 8.03906 8.26056 9.23989 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.003616 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.281390 B = 7742.571064 C = 9110.908738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.513 3.487 3 O -0.551 6.551 4 N -0.663 5.663 5 C 0.210 3.790 6 C -0.161 4.161 7 C -0.038 4.038 8 C -0.171 4.171 9 C 0.128 3.872 10 F -0.147 7.147 11 C -0.217 4.217 12 C 0.563 3.437 13 O -0.568 6.568 14 N -0.689 5.689 15 C 0.157 3.843 16 C 0.095 3.905 17 N -0.700 5.700 18 C -0.230 4.230 19 H 0.071 0.929 20 C -0.069 4.069 21 N -0.965 5.965 22 Si 0.963 3.037 23 H -0.269 1.269 24 H -0.291 1.291 25 H -0.297 1.297 26 C -0.177 4.177 27 C -0.153 4.153 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.421 0.579 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.164 0.836 35 H 0.407 0.593 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.376 0.624 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 15.138 16.579 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.305 3.695 3 O -0.429 6.429 4 N -0.306 5.306 5 C 0.112 3.888 6 C -0.181 4.181 7 C -0.057 4.057 8 C -0.191 4.191 9 C 0.107 3.893 10 F -0.125 7.125 11 C -0.223 4.223 12 C 0.348 3.652 13 O -0.448 6.448 14 N -0.338 5.338 15 C 0.031 3.969 16 C 0.002 3.998 17 N -0.339 5.339 18 C -0.361 4.361 19 H 0.089 0.911 20 C -0.261 4.261 21 N -0.616 5.616 22 Si 0.793 3.207 23 H -0.194 1.194 24 H -0.218 1.218 25 H -0.224 1.224 26 C -0.217 4.217 27 C -0.190 4.190 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.258 0.742 32 H 0.186 0.814 33 H 0.196 0.804 34 H 0.182 0.818 35 H 0.243 0.757 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.209 0.791 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.718 15.011 17.080 24.729 hybrid contribution 1.159 -1.593 -1.220 2.317 sum -8.559 13.418 15.860 22.469 Atomic orbital electron populations 1.22027 0.86430 1.07282 1.06889 1.21899 0.92714 0.81647 0.73259 1.90625 1.71116 1.32308 1.48807 1.43684 1.04160 1.11526 1.71259 1.17528 0.83840 0.92676 0.94788 1.21894 0.95658 0.98965 1.01594 1.21484 0.92805 0.97665 0.93714 1.21385 1.02656 0.91915 1.03106 1.17788 0.87466 0.85075 0.98926 1.91534 1.77876 1.54460 1.88656 1.19457 0.93007 0.97088 1.12793 1.18150 0.78714 0.85759 0.82567 1.90789 1.53837 1.41801 1.58393 1.45969 1.57889 1.23057 1.06873 1.21138 0.96506 0.86814 0.92420 1.20380 0.85862 1.04789 0.88748 1.41848 1.35121 1.07080 1.49804 1.19459 1.14688 0.87763 1.14238 0.91102 1.25438 1.00836 1.00906 0.98940 1.69797 1.32103 1.33272 1.26388 0.85221 0.77516 0.80692 0.77266 1.19368 1.21799 1.22439 1.23377 0.97485 0.98290 1.02558 1.23150 1.01395 0.91184 1.03274 0.86640 0.87647 0.86859 0.74154 0.81438 0.80412 0.81795 0.75748 0.89375 0.94259 0.79117 0.94065 0.90522 0.86879 0.85973 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.32 71.24 0.74 -0.42 16 2 C 0.51 8.38 7.79 87.66 0.68 9.06 16 3 O -0.55 -12.55 13.95 -3.04 -0.04 -12.59 16 4 N -0.66 -12.13 5.22 -302.96 -1.58 -13.71 16 5 C 0.21 4.89 6.51 38.59 0.25 5.15 16 6 C -0.16 -3.30 8.77 22.36 0.20 -3.10 16 7 C -0.04 -0.64 10.02 22.28 0.22 -0.42 16 8 C -0.17 -3.52 10.00 22.29 0.22 -3.30 16 9 C 0.13 3.67 7.29 22.66 0.17 3.83 16 10 F -0.15 -5.12 16.83 44.97 0.76 -4.36 16 11 C -0.22 -6.17 5.65 -19.95 -0.11 -6.28 16 12 C 0.56 18.43 5.74 86.65 0.50 18.93 16 13 O -0.57 -22.02 17.10 -4.05 -0.07 -22.09 16 14 N -0.69 -21.79 5.50 -466.43 -2.56 -24.35 16 15 C 0.16 5.39 5.74 86.38 0.50 5.88 16 16 C 0.09 3.39 2.15 3.60 0.01 3.40 16 17 N -0.70 -33.55 5.49 -303.35 -1.67 -35.21 16 18 C -0.23 -12.52 9.56 84.03 0.80 -11.72 16 19 H 0.07 3.82 7.77 -2.91 -0.02 3.80 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.97 -58.34 13.07 21.65 0.28 -58.05 16 22 Si 0.96 46.71 29.55 68.60 2.03 48.73 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 26 C -0.18 -5.42 10.11 30.62 0.31 -5.11 16 27 C -0.15 -4.17 10.13 30.62 0.31 -3.86 16 28 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.10 0.67 8.12 -2.39 -0.02 0.65 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.42 6.91 7.77 -92.71 -0.72 6.19 16 32 H 0.17 3.43 5.38 -2.91 -0.02 3.41 16 33 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.41 12.38 8.46 -92.71 -0.78 11.59 16 36 H 0.09 2.59 7.93 -2.39 -0.02 2.57 16 37 H 0.04 1.67 7.73 -2.39 -0.02 1.65 16 38 H 0.38 19.47 8.04 -92.71 -0.75 18.73 16 39 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.11 2.78 8.08 -2.39 -0.02 2.76 16 42 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -75.29 377.73 1.24 -74.05 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -1.16 Total: 38.98 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.25 Total: 8.62 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.53 Total: -131.33 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.11 Total: -34.69 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.76 Total: -4.36 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -75.29 1.24 -74.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499372187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.867 kcal (2) G-P(sol) polarization free energy of solvation -75.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds