Wall clock time and date at job start Tue Mar 31 2020 18:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47289 * 2 1 4 4 C 1.53003 * 109.46673 * 240.00350 * 2 1 3 5 5 C 1.53001 * 109.47096 * 175.00421 * 4 2 1 6 6 N 1.46500 * 109.47502 * 179.97438 * 5 4 2 7 7 C 1.36936 * 120.00223 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99734 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00119 * 179.97438 * 7 6 5 10 10 N 1.31624 * 119.99796 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00343 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46821 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47348 * 120.00169 * 11 9 7 14 14 H 1.48502 * 109.47153 * 240.00478 * 11 9 7 15 15 N 1.46495 * 109.47044 * 120.00341 * 2 1 3 16 16 C 1.34772 * 120.00192 * 274.99192 * 15 2 1 17 17 O 1.21281 * 119.99964 * 0.02562 * 16 15 2 18 18 C 1.50702 * 120.00043 * 179.97438 * 16 15 2 19 19 C 1.50706 * 109.46975 * 180.02562 * 18 16 15 20 20 N 1.29744 * 126.28910 * 90.02936 * 19 18 16 21 21 O 1.41340 * 109.73859 * 179.97438 * 20 19 18 22 22 C 1.34888 * 109.33389 * 359.97438 * 21 20 19 23 23 C 1.38954 * 133.34455 * 180.02562 * 22 21 20 24 24 C 1.37759 * 119.97260 * 179.97438 * 23 22 21 25 25 C 1.38995 * 120.58610 * 359.97438 * 24 23 22 26 26 F 1.35093 * 119.84534 * 180.02562 * 25 24 23 27 27 C 1.37801 * 120.31493 * 359.97438 * 25 24 23 28 28 C 1.39723 * 119.65450 * 359.76449 * 27 25 24 29 29 H 1.09000 * 109.46843 * 299.99952 * 1 2 3 30 30 H 1.09008 * 109.47142 * 59.99342 * 1 2 3 31 31 H 1.08996 * 109.47582 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47129 * 295.00064 * 4 2 1 33 33 H 1.09000 * 109.47413 * 55.00383 * 4 2 1 34 34 H 1.09004 * 109.46840 * 299.99820 * 5 4 2 35 35 H 1.09001 * 109.47543 * 59.99685 * 5 4 2 36 36 H 0.97007 * 119.99473 * 0.02562 * 6 5 4 37 37 H 0.97005 * 120.00278 * 179.97438 * 10 9 7 38 38 H 0.97000 * 119.99966 * 94.99856 * 15 2 1 39 39 H 1.08994 * 109.46872 * 60.00875 * 18 16 15 40 40 H 1.08997 * 109.47234 * 300.00427 * 18 16 15 41 41 H 1.07999 * 120.01188 * 0.02562 * 23 22 21 42 42 H 1.08000 * 119.70808 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.17282 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6134 -1.3138 6 7 4.0531 -1.3044 -2.5097 7 6 5.3951 -1.3405 -2.7796 8 1 6.0935 -0.8599 -2.1106 9 6 5.8579 -1.9958 -3.9125 10 7 5.0067 -2.5820 -4.7275 11 14 7.6886 -2.0456 -4.2803 12 1 8.4271 -1.3178 -3.2172 13 1 8.1467 -3.4576 -4.3227 14 1 7.9474 -1.4016 -5.5932 15 7 2.0183 -0.6907 1.1961 16 6 2.1472 -0.0184 2.3570 17 8 1.8585 1.1583 2.4117 18 6 2.6490 -0.7291 3.5876 19 6 2.6994 0.2392 4.7414 20 7 1.7429 0.4797 5.5844 21 8 2.1665 1.4470 6.5238 22 6 3.4343 1.8142 6.2458 23 6 4.3187 2.7099 6.8344 24 6 5.5824 2.8737 6.3111 25 6 5.9853 2.1491 5.1955 26 9 7.2283 2.3212 4.6950 27 6 5.1233 1.2552 4.5981 28 6 3.8408 1.0759 5.1226 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7515 -1.7715 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9994 -1.0729 -0.4261 36 1 3.4257 -1.7358 -3.1108 37 1 5.3299 -3.0396 -5.5194 38 1 2.2490 -1.6318 1.1525 39 1 3.6480 -1.1216 3.3984 40 1 1.9760 -1.5508 3.8324 41 1 4.0157 3.2767 7.7023 42 1 6.2665 3.5708 6.7722 43 1 5.4389 0.6931 3.7317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568685984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:18 Heat of formation + Delta-G solvation = -37.298532 kcal Electronic energy + Delta-G solvation = -27753.846202 eV Core-core repulsion = 23522.314777 eV Total energy + Delta-G solvation = -4231.531425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.98246 -42.97731 -40.94696 -38.57471 -37.95972 -36.15834 -35.69111 -33.67276 -32.49090 -31.82600 -30.87273 -30.13530 -29.36320 -25.88934 -24.80062 -23.86127 -23.65232 -22.80341 -21.69595 -21.16697 -19.35962 -19.22922 -18.50827 -18.34450 -17.70816 -17.27253 -17.06920 -16.68663 -16.53548 -16.49645 -15.94128 -15.52262 -15.45091 -15.23284 -15.16347 -14.76627 -14.61708 -14.47982 -14.18006 -14.04238 -13.75119 -13.28932 -13.09519 -12.99726 -12.90874 -12.88602 -12.68107 -12.38286 -12.37017 -12.22417 -12.20755 -11.97624 -11.91950 -11.63642 -11.03666 -10.93748 -10.21183 -10.13167 -9.60280 -8.99627 -7.95745 -5.24298 -0.64352 -0.09542 0.75129 1.27141 1.48165 1.48940 1.52536 1.58717 2.10367 2.31427 2.55886 2.74190 2.91837 3.20057 3.37640 3.38604 3.58696 3.70585 3.86412 3.92498 4.05671 4.11932 4.17641 4.20567 4.28527 4.39757 4.51852 4.57085 4.66792 4.73351 4.79166 4.81899 4.85672 4.86418 4.93067 5.00152 5.22647 5.27834 5.34622 5.46953 5.50047 5.53904 6.00036 6.27295 6.49151 7.17064 7.33943 8.09802 8.32674 9.27858 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010662 B = 0.002741 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.397002 B =10213.262866 C =12412.774933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.067 0.933 4 C -0.119 4.119 5 C 0.153 3.847 6 N -0.746 5.746 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.970 3.030 12 H -0.267 1.267 13 H -0.291 1.291 14 H -0.295 1.295 15 N -0.705 5.705 16 C 0.520 3.480 17 O -0.579 6.579 18 C -0.076 4.076 19 C 0.160 3.840 20 N -0.300 5.300 21 O -0.105 6.105 22 C 0.055 3.945 23 C -0.090 4.090 24 C -0.080 4.080 25 C 0.062 3.938 26 F -0.138 7.138 27 C -0.080 4.080 28 C -0.177 4.177 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.005 0.995 35 H 0.031 0.969 36 H 0.375 0.625 37 H 0.252 0.748 38 H 0.418 0.582 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.181 0.819 42 H 0.188 0.812 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 6.001 24.773 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.048 3.952 3 H 0.086 0.914 4 C -0.157 4.157 5 C 0.027 3.973 6 N -0.389 5.389 7 C -0.376 4.376 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.619 5.619 11 Si 0.799 3.201 12 H -0.191 1.191 13 H -0.218 1.218 14 H -0.222 1.222 15 N -0.357 5.357 16 C 0.306 3.694 17 O -0.459 6.459 18 C -0.116 4.116 19 C -0.022 4.022 20 N -0.043 5.043 21 O -0.116 6.116 22 C 0.001 3.999 23 C -0.109 4.109 24 C -0.100 4.100 25 C 0.042 3.958 26 F -0.117 7.117 27 C -0.101 4.101 28 C -0.181 4.181 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.023 0.977 35 H 0.049 0.951 36 H 0.207 0.793 37 H 0.060 0.940 38 H 0.255 0.745 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.198 0.802 42 H 0.205 0.795 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.991 6.668 25.305 26.640 hybrid contribution 1.609 -0.410 -1.274 2.093 sum -3.382 6.258 24.031 25.062 Atomic orbital electron populations 1.22086 0.93837 1.03084 1.02213 1.20799 0.94653 0.96410 0.83292 0.91438 1.21897 0.94714 1.01889 0.97175 1.20786 0.93361 0.94133 0.89032 1.42586 1.04467 1.65242 1.26619 1.19636 0.85308 1.27341 1.05322 0.90871 1.25534 1.01844 1.01344 0.97914 1.69809 1.34495 1.41978 1.15634 0.85120 0.80345 0.77066 0.77524 1.19132 1.21781 1.22224 1.45945 1.66241 1.14898 1.08656 1.20451 0.77266 0.86764 0.84937 1.90753 1.51729 1.17860 1.85575 1.20494 1.08938 0.96205 0.85918 1.24134 0.89467 0.94028 0.94572 1.79815 1.18087 1.04392 1.02026 1.89119 1.24993 1.50896 1.46545 1.20752 0.86420 0.97138 0.95553 1.20250 0.90578 0.97702 1.02356 1.21485 0.96327 0.98532 0.93614 1.17545 0.81077 1.00372 0.96770 1.91538 1.38591 1.94533 1.86997 1.20757 0.90967 0.98038 1.00316 1.20488 0.96341 1.02068 0.99200 0.93472 0.90799 0.90799 0.89926 0.90442 0.97728 0.95115 0.79289 0.93960 0.74461 0.82152 0.82696 0.80180 0.79487 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.48 71.98 0.68 -2.51 16 2 C 0.15 3.66 2.57 44.99 0.12 3.77 16 3 H 0.07 1.94 7.58 -2.39 -0.02 1.93 16 4 C -0.12 -3.23 4.87 30.60 0.15 -3.08 16 5 C 0.15 5.63 6.15 86.38 0.53 6.17 16 6 N -0.75 -36.31 5.60 -343.45 -1.92 -38.24 16 7 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 9 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 10 N -0.97 -58.01 13.06 21.65 0.28 -57.72 16 11 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 15 N -0.70 -13.91 4.53 -442.54 -2.00 -15.91 16 16 C 0.52 11.66 7.79 87.66 0.68 12.35 16 17 O -0.58 -18.63 15.70 -3.03 -0.05 -18.68 16 18 C -0.08 -1.13 6.30 29.10 0.18 -0.94 16 19 C 0.16 3.53 5.96 45.04 0.27 3.80 16 20 N -0.30 -7.91 12.81 -43.47 -0.56 -8.47 16 21 O -0.11 -2.74 12.07 29.21 0.35 -2.39 16 22 C 0.05 1.18 7.48 22.97 0.17 1.35 16 23 C -0.09 -1.23 10.06 22.33 0.22 -1.00 16 24 C -0.08 -0.98 9.99 22.34 0.22 -0.75 16 25 C 0.06 1.08 7.29 22.35 0.16 1.24 16 26 F -0.14 -2.68 17.26 44.97 0.78 -1.91 16 27 C -0.08 -1.53 10.08 22.53 0.23 -1.30 16 28 C -0.18 -3.86 6.32 -20.21 -0.13 -3.99 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.03 1.07 7.75 -2.39 -0.02 1.05 16 36 H 0.38 19.28 7.67 -92.70 -0.71 18.57 16 37 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 38 H 0.42 6.01 8.60 -92.71 -0.80 5.22 16 39 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 43 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -77.28 378.77 3.26 -74.02 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.44 Total: 23.12 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.80 Total: -1.09 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -4.20 Total: -120.34 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.30 Total: -21.07 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.28 3.26 -74.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568685984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.719 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds