Wall clock time and date at job start Tue Mar 31 2020 18:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47323 * 2 1 4 4 C 1.53006 * 109.47179 * 120.00214 * 2 1 3 5 5 N 1.46502 * 109.47021 * 174.99805 * 4 2 1 6 6 C 1.46499 * 120.00217 * 269.99970 * 5 4 2 7 7 C 1.36940 * 119.99758 * 90.00336 * 5 4 2 8 8 H 1.08003 * 119.99897 * 23.61313 * 7 5 4 9 9 C 1.38809 * 119.99790 * 203.61373 * 7 5 4 10 10 N 1.31625 * 120.00128 * 11.30867 * 9 7 5 11 11 Si 1.86800 * 120.00025 * 191.30975 * 9 7 5 12 12 H 1.48500 * 109.46931 * 59.99878 * 11 9 7 13 13 H 1.48501 * 109.47297 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46919 * 300.00044 * 11 9 7 15 15 N 1.46502 * 109.47329 * 239.99857 * 2 1 3 16 16 C 1.34784 * 119.99763 * 85.00113 * 15 2 1 17 17 O 1.21281 * 119.99891 * 0.02562 * 16 15 2 18 18 C 1.50694 * 119.99905 * 180.02562 * 16 15 2 19 19 C 1.50698 * 109.46975 * 180.02562 * 18 16 15 20 20 N 1.29749 * 126.29296 * 89.97500 * 19 18 16 21 21 O 1.41353 * 109.73673 * 179.97438 * 20 19 18 22 22 C 1.34892 * 109.33326 * 0.02562 * 21 20 19 23 23 C 1.38946 * 133.34468 * 180.02562 * 22 21 20 24 24 C 1.37760 * 119.97646 * 180.22476 * 23 22 21 25 25 C 1.38997 * 120.58113 * 359.52951 * 24 23 22 26 26 F 1.35101 * 119.84239 * 180.23750 * 25 24 23 27 27 C 1.37795 * 120.31615 * 0.45060 * 25 24 23 28 28 C 1.39723 * 119.65583 * 359.78839 * 27 25 24 29 29 H 1.08993 * 109.47062 * 300.00115 * 1 2 3 30 30 H 1.09001 * 109.47038 * 60.00094 * 1 2 3 31 31 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46889 * 295.00068 * 4 2 1 33 33 H 1.09004 * 109.46970 * 54.99762 * 4 2 1 34 34 H 1.08995 * 109.47359 * 94.53350 * 6 5 4 35 35 H 1.08997 * 109.46779 * 214.54181 * 6 5 4 36 36 H 1.08999 * 109.46784 * 334.53677 * 6 5 4 37 37 H 0.96994 * 119.99797 * 179.97438 * 10 9 7 38 38 H 0.96996 * 120.00273 * 265.00414 * 15 2 1 39 39 H 1.08999 * 109.47475 * 60.00171 * 18 16 15 40 40 H 1.09004 * 109.47277 * 299.99422 * 18 16 15 41 41 H 1.08004 * 120.01594 * 359.94246 * 23 22 21 42 42 H 1.07997 * 119.71420 * 179.73943 * 24 23 22 43 43 H 1.07999 * 120.17432 * 179.81288 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9920 0.5611 7 6 4.2799 0.1647 1.7240 8 1 3.8834 0.8069 2.4966 9 6 5.5799 0.3441 1.2719 10 7 5.9919 -0.2796 0.1885 11 14 6.7449 1.4706 2.2010 12 1 6.9136 0.9718 3.5895 13 1 8.0639 1.4901 1.5188 14 1 6.1835 2.8451 2.2335 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0182 -2.3572 17 8 1.8591 1.1586 -2.4115 18 6 2.6489 -0.7287 -3.5877 19 6 2.7004 0.2398 -4.7411 20 7 3.7088 0.9855 -5.0734 21 8 3.3769 1.7588 -6.2091 22 6 2.1136 1.4761 -6.5882 23 6 1.3012 1.9360 -7.6173 24 6 0.0189 1.4506 -7.7513 25 6 -0.4707 0.4938 -6.8699 26 9 -1.7289 0.0246 -7.0181 27 6 0.3196 0.0248 -5.8432 28 6 1.6202 0.5128 -5.6935 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1584 2.1369 33 1 1.6053 -1.7199 1.2951 34 1 4.3532 -1.7643 -0.4802 35 1 5.0471 -2.2389 1.0887 36 1 3.4426 -2.8401 0.6067 37 1 6.9002 -0.1539 -0.1277 38 1 2.2490 -1.6318 -1.1526 39 1 1.9760 -1.5505 -3.8326 40 1 3.6481 -1.1212 -3.3986 41 1 1.6732 2.6772 -8.3092 42 1 -0.6104 1.8141 -8.5502 43 1 -0.0642 -0.7165 -5.1579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569142041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:57 Heat of formation + Delta-G solvation = 7.428798 kcal Electronic energy + Delta-G solvation = -28866.239615 eV Core-core repulsion = 24636.647712 eV Total energy + Delta-G solvation = -4229.591902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.15615 -41.93714 -39.37549 -37.68059 -36.49267 -34.62758 -34.02362 -31.59524 -30.99045 -30.49627 -29.90562 -28.82905 -26.22297 -25.62383 -23.90907 -22.93462 -22.39218 -21.18592 -20.13567 -19.79470 -18.43727 -17.53838 -17.00212 -16.86732 -16.77282 -16.09734 -15.60559 -15.54658 -15.42601 -14.89544 -14.65255 -14.52833 -13.91316 -13.73077 -13.61856 -13.45799 -13.15108 -13.06335 -12.89098 -12.40638 -12.17913 -12.10978 -11.92092 -11.66487 -11.47011 -11.29620 -11.19169 -11.10915 -10.84859 -10.79315 -10.58072 -10.25380 -10.00607 -9.87554 -9.51330 -9.28397 -8.69440 -8.63986 -8.43865 -6.77461 -5.75061 -3.21111 0.28462 0.79014 1.82917 2.34463 3.00786 3.09981 3.40156 3.45781 3.45881 3.56068 3.75528 3.93804 4.11256 4.23508 4.50177 4.54766 4.79475 4.96409 5.05103 5.11239 5.25650 5.32322 5.44815 5.46620 5.58265 5.62329 5.64714 5.65483 5.78834 5.84127 5.95355 6.06022 6.19274 6.30204 6.43025 6.48949 6.58951 6.83631 7.08154 7.10237 7.27305 7.60513 7.78888 7.97459 8.37485 8.66157 9.21215 9.83097 10.30800 11.30375 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.003169 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.473248 B = 8833.573380 C =10000.269877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.161 3.839 7 C -0.259 4.259 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.283 1.283 15 N -0.693 5.693 16 C 0.525 3.475 17 O -0.542 6.542 18 C -0.080 4.080 19 C 0.160 3.840 20 N -0.256 5.256 21 O -0.088 6.088 22 C 0.076 3.924 23 C -0.095 4.095 24 C -0.097 4.097 25 C 0.067 3.933 26 F -0.135 7.135 27 C -0.071 4.071 28 C -0.154 4.154 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.043 0.957 36 H -0.005 1.005 37 H 0.253 0.747 38 H 0.397 0.603 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.409 -3.918 -14.169 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.389 4.389 8 H 0.085 0.915 9 C -0.191 4.191 10 N -0.549 5.549 11 Si 0.734 3.266 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.209 1.209 15 N -0.342 5.342 16 C 0.308 3.692 17 O -0.419 6.419 18 C -0.121 4.121 19 C -0.022 4.022 20 N 0.002 4.998 21 O -0.098 6.098 22 C 0.022 3.978 23 C -0.115 4.115 24 C -0.117 4.117 25 C 0.048 3.952 26 F -0.114 7.114 27 C -0.092 4.092 28 C -0.158 4.158 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.013 0.987 37 H 0.063 0.937 38 H 0.231 0.769 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.159 -2.663 -14.061 18.779 hybrid contribution -0.001 -0.027 0.271 0.273 sum -12.160 -2.689 -13.789 18.581 Atomic orbital electron populations 1.22150 0.96788 1.01104 1.01749 1.21915 0.91661 0.99254 0.86180 0.89594 1.21198 0.85842 0.97200 0.94281 1.43874 0.99012 1.20860 1.68168 1.20851 0.94645 0.85036 0.97819 1.19112 0.94613 1.10737 1.14439 0.91531 1.25005 0.98866 0.98957 0.96293 1.69996 1.17377 1.45552 1.21950 0.86352 0.80360 0.80792 0.79118 1.21124 1.21629 1.20937 1.45690 1.65823 1.13722 1.08981 1.19756 0.78080 0.87181 0.84178 1.90717 1.50524 1.15579 1.85102 1.20323 1.06628 0.96015 0.89114 1.23778 0.89741 0.94373 0.94353 1.80066 1.18611 1.04837 0.96261 1.89223 1.24777 1.56064 1.39735 1.20294 0.86960 0.94924 0.95663 1.19813 0.91935 1.02436 0.97325 1.21043 0.95431 0.95962 0.99298 1.17247 0.80900 0.98835 0.98230 1.91523 1.37018 1.87432 1.95401 1.20551 0.91568 1.00027 0.97041 1.20386 0.96110 1.01853 0.97426 0.92028 0.93031 0.93116 0.92267 0.93965 0.95127 0.93817 0.98663 0.93728 0.76895 0.86224 0.85366 0.83288 0.83092 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 2 C 0.12 2.09 2.88 -67.93 -0.20 1.90 16 3 H 0.09 1.92 7.58 -51.93 -0.39 1.52 16 4 C 0.14 2.65 5.33 -4.04 -0.02 2.63 16 5 N -0.60 -13.88 2.78 -181.12 -0.50 -14.39 16 6 C 0.16 3.57 7.61 59.85 0.46 4.02 16 7 C -0.26 -6.94 9.66 -15.06 -0.15 -7.09 16 8 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 9 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 10 N -0.90 -25.66 10.66 55.49 0.59 -25.07 16 11 Si 0.90 22.11 29.57 -169.99 -5.03 17.08 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 N -0.69 -11.56 4.41 -53.80 -0.24 -11.80 16 16 C 0.52 9.28 7.79 -10.99 -0.09 9.19 16 17 O -0.54 -11.85 15.70 5.56 0.09 -11.76 16 18 C -0.08 -1.09 6.30 -29.04 -0.18 -1.27 16 19 C 0.16 2.50 5.95 -80.11 -0.48 2.02 16 20 N -0.26 -4.64 12.81 34.91 0.45 -4.19 16 21 O -0.09 -1.45 12.07 7.48 0.09 -1.36 16 22 C 0.08 1.03 7.48 -38.50 -0.29 0.74 16 23 C -0.10 -0.92 10.06 -39.49 -0.40 -1.32 16 24 C -0.10 -0.83 9.99 -39.47 -0.39 -1.22 16 25 C 0.07 0.68 7.29 -39.46 -0.29 0.40 16 26 F -0.14 -1.39 17.26 2.25 0.04 -1.35 16 27 C -0.07 -0.79 10.08 -39.19 -0.39 -1.18 16 28 C -0.15 -2.10 6.32 -105.16 -0.66 -2.77 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 33 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 34 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 35 H 0.04 1.08 7.30 -51.93 -0.38 0.70 16 36 H -0.01 -0.09 7.84 -51.93 -0.41 -0.50 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.40 5.83 7.17 -40.82 -0.29 5.53 16 39 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -34.01 371.64 -7.31 -41.32 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.59 Total: 1.65 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.82 Total: 4.27 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.30 Total: -55.45 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.18 Total: -13.12 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.01 -7.31 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569142041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.749 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds