Wall clock time and date at job start Tue Mar 31 2020 18:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47323 * 2 1 4 4 C 1.53006 * 109.47179 * 120.00214 * 2 1 3 5 5 N 1.46502 * 109.47021 * 174.99805 * 4 2 1 6 6 C 1.46499 * 120.00217 * 269.99970 * 5 4 2 7 7 C 1.36940 * 119.99758 * 90.00336 * 5 4 2 8 8 H 1.08003 * 119.99897 * 23.61313 * 7 5 4 9 9 C 1.38809 * 119.99790 * 203.61373 * 7 5 4 10 10 N 1.31625 * 120.00128 * 11.30867 * 9 7 5 11 11 Si 1.86800 * 120.00025 * 191.30975 * 9 7 5 12 12 H 1.48500 * 109.46931 * 59.99878 * 11 9 7 13 13 H 1.48501 * 109.47297 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46919 * 300.00044 * 11 9 7 15 15 N 1.46502 * 109.47329 * 239.99857 * 2 1 3 16 16 C 1.34784 * 119.99763 * 85.00113 * 15 2 1 17 17 O 1.21281 * 119.99891 * 0.02562 * 16 15 2 18 18 C 1.50694 * 119.99905 * 180.02562 * 16 15 2 19 19 C 1.50698 * 109.46975 * 180.02562 * 18 16 15 20 20 N 1.29749 * 126.29296 * 89.97500 * 19 18 16 21 21 O 1.41353 * 109.73673 * 179.97438 * 20 19 18 22 22 C 1.34892 * 109.33326 * 0.02562 * 21 20 19 23 23 C 1.38946 * 133.34468 * 180.02562 * 22 21 20 24 24 C 1.37760 * 119.97646 * 180.22476 * 23 22 21 25 25 C 1.38997 * 120.58113 * 359.52951 * 24 23 22 26 26 F 1.35101 * 119.84239 * 180.23750 * 25 24 23 27 27 C 1.37795 * 120.31615 * 0.45060 * 25 24 23 28 28 C 1.39723 * 119.65583 * 359.78839 * 27 25 24 29 29 H 1.08993 * 109.47062 * 300.00115 * 1 2 3 30 30 H 1.09001 * 109.47038 * 60.00094 * 1 2 3 31 31 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46889 * 295.00068 * 4 2 1 33 33 H 1.09004 * 109.46970 * 54.99762 * 4 2 1 34 34 H 1.08995 * 109.47359 * 94.53350 * 6 5 4 35 35 H 1.08997 * 109.46779 * 214.54181 * 6 5 4 36 36 H 1.08999 * 109.46784 * 334.53677 * 6 5 4 37 37 H 0.96994 * 119.99797 * 179.97438 * 10 9 7 38 38 H 0.96996 * 120.00273 * 265.00414 * 15 2 1 39 39 H 1.08999 * 109.47475 * 60.00171 * 18 16 15 40 40 H 1.09004 * 109.47277 * 299.99422 * 18 16 15 41 41 H 1.08004 * 120.01594 * 359.94246 * 23 22 21 42 42 H 1.07997 * 119.71420 * 179.73943 * 24 23 22 43 43 H 1.07999 * 120.17432 * 179.81288 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9920 0.5611 7 6 4.2799 0.1647 1.7240 8 1 3.8834 0.8069 2.4966 9 6 5.5799 0.3441 1.2719 10 7 5.9919 -0.2796 0.1885 11 14 6.7449 1.4706 2.2010 12 1 6.9136 0.9718 3.5895 13 1 8.0639 1.4901 1.5188 14 1 6.1835 2.8451 2.2335 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0182 -2.3572 17 8 1.8591 1.1586 -2.4115 18 6 2.6489 -0.7287 -3.5877 19 6 2.7004 0.2398 -4.7411 20 7 3.7088 0.9855 -5.0734 21 8 3.3769 1.7588 -6.2091 22 6 2.1136 1.4761 -6.5882 23 6 1.3012 1.9360 -7.6173 24 6 0.0189 1.4506 -7.7513 25 6 -0.4707 0.4938 -6.8699 26 9 -1.7289 0.0246 -7.0181 27 6 0.3196 0.0248 -5.8432 28 6 1.6202 0.5128 -5.6935 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1584 2.1369 33 1 1.6053 -1.7199 1.2951 34 1 4.3532 -1.7643 -0.4802 35 1 5.0471 -2.2389 1.0887 36 1 3.4426 -2.8401 0.6067 37 1 6.9002 -0.1539 -0.1277 38 1 2.2490 -1.6318 -1.1526 39 1 1.9760 -1.5505 -3.8326 40 1 3.6481 -1.1212 -3.3986 41 1 1.6732 2.6772 -8.3092 42 1 -0.6104 1.8141 -8.5502 43 1 -0.0642 -0.7165 -5.1579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569142041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:57 Heat of formation + Delta-G solvation = -14.748650 kcal Electronic energy + Delta-G solvation = -28867.201301 eV Core-core repulsion = 24636.647712 eV Total energy + Delta-G solvation = -4230.553589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.95404 -42.97292 -40.78997 -38.56749 -38.10638 -35.91944 -35.58044 -33.22813 -32.22917 -31.77672 -30.84941 -30.00411 -27.94403 -27.38490 -24.79564 -23.88044 -23.84483 -22.71725 -21.55122 -21.07205 -19.35343 -18.78897 -18.50313 -18.29036 -17.67109 -17.15843 -17.06565 -16.72549 -16.49655 -16.42672 -15.90420 -15.51541 -15.44730 -15.17237 -14.90164 -14.64789 -14.53273 -14.23997 -14.01639 -13.73605 -13.60348 -13.24513 -13.05941 -12.98449 -12.80907 -12.66579 -12.63670 -12.56845 -12.36427 -12.27170 -12.19049 -12.04415 -11.83723 -11.68788 -10.92717 -10.62356 -10.20375 -9.94388 -9.58533 -8.70245 -7.82552 -5.27724 -0.61364 -0.07731 0.77778 1.32207 1.42810 1.44064 1.49609 1.64506 2.20579 2.40770 2.50707 2.74910 2.96142 3.21114 3.32120 3.39281 3.69707 3.76366 3.87533 3.94891 4.13312 4.17093 4.22396 4.30756 4.43647 4.52101 4.56287 4.75080 4.79686 4.83349 4.87413 4.87795 4.93766 4.95333 5.03553 5.22122 5.39993 5.41262 5.50820 5.65735 5.69888 5.82382 6.04831 6.35218 6.63268 7.19434 7.32363 7.92162 8.30994 9.18989 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.003169 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.473248 B = 8833.573380 C =10000.269877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.123 3.877 3 H 0.031 0.969 4 C 0.143 3.857 5 N -0.612 5.612 6 C 0.172 3.828 7 C -0.261 4.261 8 H 0.064 0.936 9 C -0.047 4.047 10 N -0.926 5.926 11 Si 0.954 3.046 12 H -0.275 1.275 13 H -0.297 1.297 14 H -0.286 1.286 15 N -0.686 5.686 16 C 0.519 3.481 17 O -0.591 6.591 18 C -0.073 4.073 19 C 0.158 3.842 20 N -0.313 5.313 21 O -0.107 6.107 22 C 0.048 3.952 23 C -0.091 4.091 24 C -0.078 4.078 25 C 0.068 3.932 26 F -0.133 7.133 27 C -0.075 4.075 28 C -0.172 4.172 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.041 0.959 37 H 0.243 0.757 38 H 0.409 0.591 39 H 0.173 0.827 40 H 0.127 0.873 41 H 0.179 0.821 42 H 0.192 0.808 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.315 -5.249 -14.957 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 H 0.050 0.950 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.027 3.973 7 C -0.392 4.392 8 H 0.082 0.918 9 C -0.242 4.242 10 N -0.573 5.573 11 Si 0.784 3.216 12 H -0.201 1.201 13 H -0.224 1.224 14 H -0.213 1.213 15 N -0.336 5.336 16 C 0.304 3.696 17 O -0.472 6.472 18 C -0.113 4.113 19 C -0.024 4.024 20 N -0.056 5.056 21 O -0.118 6.118 22 C -0.005 4.005 23 C -0.110 4.110 24 C -0.097 4.097 25 C 0.048 3.952 26 F -0.111 7.111 27 C -0.095 4.095 28 C -0.176 4.176 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.246 0.754 39 H 0.190 0.810 40 H 0.145 0.855 41 H 0.196 0.804 42 H 0.209 0.791 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.103 -4.034 -14.825 21.544 hybrid contribution 0.726 0.386 0.496 0.960 sum -14.377 -3.649 -14.329 20.623 Atomic orbital electron populations 1.22007 0.93388 1.03128 1.01803 1.21683 0.94179 0.96252 0.86351 0.95035 1.21379 0.83158 0.99443 0.94434 1.44081 1.00894 1.20423 1.68022 1.20671 0.94383 0.86103 0.96138 1.19396 0.95068 1.10751 1.13962 0.91825 1.25622 1.00429 1.00809 0.97376 1.70142 1.16901 1.47055 1.23162 0.85539 0.78399 0.79167 0.78501 1.20052 1.22377 1.21300 1.45649 1.65301 1.14193 1.08425 1.20372 0.77178 0.86718 0.85318 1.90693 1.52733 1.17815 1.85977 1.20422 1.07594 0.96497 0.86755 1.24149 0.89978 0.93613 0.94627 1.79966 1.20854 1.06763 0.98005 1.89130 1.26627 1.56422 1.39645 1.20916 0.86418 0.95981 0.97228 1.20257 0.91765 1.02538 0.96483 1.21494 0.94937 0.94149 0.99153 1.17404 0.80787 0.98859 0.98120 1.91537 1.36813 1.87436 1.95340 1.20744 0.90590 1.00396 0.97805 1.20433 0.96850 1.02911 0.97426 0.90842 0.94178 0.89965 0.92112 0.90038 0.96712 0.97238 0.94023 0.94746 0.75439 0.80974 0.85495 0.80408 0.79106 0.81743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.48 71.98 0.68 -3.09 16 2 C 0.12 4.29 2.88 44.99 0.13 4.42 16 3 H 0.03 1.45 7.58 -2.39 -0.02 1.43 16 4 C 0.14 4.99 5.33 86.38 0.46 5.45 16 5 N -0.61 -28.03 2.78 -726.94 -2.02 -30.05 16 6 C 0.17 7.44 7.61 127.77 0.97 8.41 16 7 C -0.26 -14.09 9.66 84.03 0.81 -13.27 16 8 H 0.06 3.40 7.85 -2.91 -0.02 3.37 16 9 C -0.05 -2.62 5.13 84.86 0.44 -2.18 16 10 N -0.93 -54.06 10.66 21.65 0.23 -53.83 16 11 Si 0.95 46.46 29.57 68.60 2.03 48.49 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 14 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 15 N -0.69 -22.21 4.41 -442.52 -1.95 -24.16 16 16 C 0.52 18.45 7.79 87.65 0.68 19.13 16 17 O -0.59 -26.82 15.70 -3.03 -0.05 -26.86 16 18 C -0.07 -1.95 6.30 29.10 0.18 -1.76 16 19 C 0.16 5.05 5.95 45.04 0.27 5.32 16 20 N -0.31 -12.05 12.81 -43.47 -0.56 -12.61 16 21 O -0.11 -3.75 12.07 29.14 0.35 -3.39 16 22 C 0.05 1.31 7.48 22.97 0.17 1.48 16 23 C -0.09 -1.58 10.06 22.33 0.22 -1.35 16 24 C -0.08 -1.05 9.99 22.34 0.22 -0.83 16 25 C 0.07 1.18 7.29 22.35 0.16 1.35 16 26 F -0.13 -2.30 17.26 44.97 0.78 -1.52 16 27 C -0.07 -1.52 10.08 22.52 0.23 -1.30 16 28 C -0.17 -4.67 6.32 -20.21 -0.13 -4.80 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 2.12 8.03 -2.39 -0.02 2.10 16 33 H 0.08 2.26 7.86 -2.38 -0.02 2.24 16 34 H 0.01 0.68 6.90 -2.39 -0.02 0.67 16 35 H 0.01 0.44 7.30 -2.39 -0.02 0.43 16 36 H 0.04 1.40 7.84 -2.39 -0.02 1.38 16 37 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.41 11.10 7.17 -92.71 -0.66 10.44 16 39 H 0.17 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 41 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 42 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -79.45 371.64 4.70 -74.74 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.39 Total: 12.20 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 5.51 Total: 16.99 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -4.30 Total: -120.64 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: 0.30 Total: -30.26 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.78 Total: -1.52 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -79.45 4.70 -74.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569142041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.996 kcal (2) G-P(sol) polarization free energy of solvation -79.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds