Wall clock time and date at job start Tue Mar 31 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46408 * 2 1 4 4 C 1.53003 * 109.47130 * 240.00302 * 2 1 3 5 5 N 1.46497 * 109.46778 * 184.99850 * 4 2 1 6 6 C 1.46504 * 119.99881 * 269.99484 * 5 4 2 7 7 C 1.36930 * 120.00189 * 89.99948 * 5 4 2 8 8 H 1.07997 * 120.00087 * 20.30255 * 7 5 4 9 9 C 1.38819 * 120.00006 * 200.30454 * 7 5 4 10 10 N 1.31613 * 119.99941 * 15.01111 * 9 7 5 11 11 Si 1.86803 * 119.99746 * 195.01520 * 9 7 5 12 12 H 1.48495 * 109.47312 * 84.99985 * 11 9 7 13 13 H 1.48504 * 109.46762 * 205.00083 * 11 9 7 14 14 H 1.48504 * 109.47325 * 324.99973 * 11 9 7 15 15 N 1.46495 * 109.47234 * 119.99916 * 2 1 3 16 16 C 1.34774 * 119.99900 * 274.99869 * 15 2 1 17 17 O 1.21276 * 120.00314 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00110 * 179.97438 * 16 15 2 19 19 C 1.50698 * 109.47368 * 179.97438 * 18 16 15 20 20 N 1.29750 * 126.28561 * 90.02982 * 19 18 16 21 21 O 1.41352 * 109.73468 * 179.97438 * 20 19 18 22 22 C 1.34895 * 109.33216 * 0.02562 * 21 20 19 23 23 C 1.38944 * 133.33727 * 179.97438 * 22 21 20 24 24 C 1.37769 * 119.96916 * 179.97438 * 23 22 21 25 25 C 1.38994 * 120.58090 * 0.02562 * 24 23 22 26 26 F 1.35097 * 119.83620 * 179.97438 * 25 24 23 27 27 C 1.37789 * 120.31762 * 359.97083 * 25 24 23 28 28 C 1.39718 * 119.65882 * 359.76685 * 27 25 24 29 29 H 1.08999 * 109.47061 * 60.00124 * 1 2 3 30 30 H 1.09004 * 109.46841 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47372 * 299.99750 * 1 2 3 32 32 H 1.08998 * 109.46666 * 304.99810 * 4 2 1 33 33 H 1.08996 * 109.47370 * 64.99193 * 4 2 1 34 34 H 1.08999 * 109.47128 * 95.10464 * 6 5 4 35 35 H 1.08998 * 109.47009 * 215.11191 * 6 5 4 36 36 H 1.09002 * 109.46913 * 335.10754 * 6 5 4 37 37 H 0.97001 * 119.99939 * 180.02562 * 10 9 7 38 38 H 0.96993 * 120.00169 * 95.00479 * 15 2 1 39 39 H 1.09004 * 109.47033 * 60.00414 * 18 16 15 40 40 H 1.09005 * 109.47531 * 300.00580 * 18 16 15 41 41 H 1.08000 * 120.01695 * 0.02562 * 23 22 21 42 42 H 1.08003 * 119.70707 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.16936 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0851 -1.9156 -0.6023 8 1 3.5231 -2.8296 -0.4790 9 6 5.4005 -1.8453 -0.1644 10 7 5.9903 -0.6755 -0.0381 11 14 6.3334 -3.4109 0.2454 12 1 6.9260 -3.9731 -0.9948 13 1 7.4149 -3.1031 1.2154 14 1 5.4010 -4.4012 0.8414 15 7 2.0184 -0.6906 1.1961 16 6 2.1472 -0.0182 2.3571 17 8 1.8583 1.1584 2.4117 18 6 2.6490 -0.7287 3.5877 19 6 2.7004 0.2399 4.7411 20 7 1.7443 0.4812 5.5844 21 8 2.1690 1.4487 6.5233 22 6 3.4366 1.8158 6.2441 23 6 4.3211 2.7121 6.8312 24 6 5.5845 2.8757 6.3067 25 6 5.9863 2.1510 5.1908 26 9 7.2285 2.3236 4.6887 27 6 5.1237 1.2572 4.5944 28 6 3.8415 1.0780 5.1200 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6054 -1.7197 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 4.6151 0.9373 -0.9771 35 1 5.2330 -0.2043 -2.1951 36 1 3.7754 0.7587 -2.5364 37 1 6.9096 -0.6264 0.2675 38 1 2.2492 -1.6316 1.1526 39 1 3.6481 -1.1212 3.3986 40 1 1.9761 -1.5505 3.8326 41 1 4.0187 3.2797 7.6988 42 1 6.2688 3.5733 6.7667 43 1 5.4385 0.6950 3.7277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569142042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:00 Heat of formation + Delta-G solvation = 5.508998 kcal Electronic energy + Delta-G solvation = -29374.087797 eV Core-core repulsion = 25144.412646 eV Total energy + Delta-G solvation = -4229.675151 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.86505 -41.81935 -39.27786 -37.51188 -36.47516 -34.55300 -33.99652 -31.62392 -30.85172 -30.41880 -29.74177 -28.69837 -26.23699 -25.67904 -23.74069 -22.75774 -22.33035 -21.23678 -19.99365 -19.68279 -18.24865 -17.39679 -17.10462 -16.61253 -16.55759 -15.91768 -15.60893 -15.35528 -15.26443 -14.91511 -14.67496 -14.21305 -13.86794 -13.66641 -13.53633 -13.30629 -13.15472 -12.90745 -12.80995 -12.38740 -12.18757 -11.92502 -11.83128 -11.54926 -11.44855 -11.38206 -11.15530 -11.07313 -10.92465 -10.77652 -10.47252 -10.32148 -10.12580 -9.90199 -9.41597 -9.13872 -8.65511 -8.50480 -8.38898 -6.89371 -5.82589 -3.27571 0.42943 0.98460 1.91292 2.42824 3.10800 3.26630 3.27895 3.34474 3.37512 3.67493 3.96074 4.04737 4.29341 4.37906 4.40165 4.75942 4.95965 5.14772 5.21954 5.26347 5.30717 5.35316 5.42780 5.60630 5.64629 5.69071 5.79515 5.83600 5.88076 5.93296 6.01938 6.11017 6.19467 6.39568 6.47232 6.51105 6.68305 6.82127 7.15954 7.16502 7.31012 7.61775 7.71681 8.13440 8.26360 8.77603 9.10929 9.75783 10.25539 11.20840 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010074 B = 0.004513 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.658197 B = 6203.189922 C = 7736.330531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.682 5.682 16 C 0.525 3.475 17 O -0.552 6.552 18 C -0.081 4.081 19 C 0.169 3.831 20 N -0.276 5.276 21 O -0.091 6.091 22 C 0.074 3.926 23 C -0.101 4.101 24 C -0.096 4.096 25 C 0.070 3.930 26 F -0.132 7.132 27 C -0.063 4.063 28 C -0.156 4.156 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.029 0.971 35 H 0.043 0.957 36 H -0.003 1.003 37 H 0.253 0.747 38 H 0.406 0.594 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 2.423 9.393 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.018 3.982 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.331 5.331 16 C 0.309 3.691 17 O -0.430 6.430 18 C -0.122 4.122 19 C -0.012 4.012 20 N -0.019 5.019 21 O -0.101 6.101 22 C 0.020 3.980 23 C -0.121 4.121 24 C -0.116 4.116 25 C 0.051 3.949 26 F -0.110 7.110 27 C -0.084 4.084 28 C -0.159 4.159 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.016 0.984 37 H 0.063 0.937 38 H 0.242 0.758 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.052 3.084 9.894 11.529 hybrid contribution 1.792 -1.039 -0.124 2.075 sum -3.261 2.044 9.770 10.500 Atomic orbital electron populations 1.22160 0.96788 1.01330 1.01640 1.21859 0.91848 0.98407 0.86738 0.90489 1.21185 0.85897 0.97966 0.93577 1.43909 0.98910 1.22673 1.66539 1.20797 0.92900 0.90412 0.94063 1.19083 0.96014 0.89900 1.33731 0.91479 1.24933 0.98468 0.96103 0.99767 1.70093 1.12779 1.21679 1.49563 0.86455 0.80015 0.83163 0.77949 1.21471 1.21756 1.20541 1.45621 1.64827 1.14398 1.08289 1.19725 0.78098 0.87080 0.84242 1.90694 1.51264 1.15812 1.85279 1.20338 1.06655 0.96287 0.88910 1.23794 0.89529 0.93732 0.94189 1.79855 1.16951 1.03680 1.01404 1.89150 1.23890 1.50756 1.46348 1.20235 0.86678 0.96171 0.94919 1.19743 0.91270 0.99017 1.02043 1.21058 0.96224 0.99298 0.94983 1.17278 0.81485 1.00144 0.96035 1.91544 1.38258 1.94471 1.86769 1.20793 0.91049 0.96924 0.99589 1.20350 0.95933 1.01278 0.98372 0.92206 0.92924 0.92942 0.93237 0.92896 0.95259 0.93864 0.98445 0.93670 0.75826 0.85271 0.86325 0.83465 0.83139 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.10 2.88 -67.93 -0.20 1.91 16 3 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 4 C 0.14 2.57 5.36 -4.04 -0.02 2.55 16 5 N -0.60 -13.39 2.82 -181.12 -0.51 -13.90 16 6 C 0.16 3.80 9.02 59.85 0.54 4.34 16 7 C -0.26 -6.10 8.02 -15.06 -0.12 -6.22 16 8 H 0.07 1.52 7.86 -52.49 -0.41 1.11 16 9 C 0.01 0.16 5.06 -17.43 -0.09 0.08 16 10 N -0.90 -23.79 10.67 55.49 0.59 -23.20 16 11 Si 0.89 19.74 29.58 -169.99 -5.03 14.71 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 15 N -0.68 -11.98 4.49 -53.81 -0.24 -12.22 16 16 C 0.53 9.63 7.79 -10.99 -0.09 9.54 16 17 O -0.55 -12.10 15.70 5.56 0.09 -12.01 16 18 C -0.08 -1.20 6.30 -29.04 -0.18 -1.39 16 19 C 0.17 2.78 5.95 -80.11 -0.48 2.30 16 20 N -0.28 -4.73 12.81 34.91 0.45 -4.29 16 21 O -0.09 -1.50 12.07 7.47 0.09 -1.41 16 22 C 0.07 1.10 7.48 -38.50 -0.29 0.81 16 23 C -0.10 -1.14 10.06 -39.49 -0.40 -1.53 16 24 C -0.10 -1.04 9.99 -39.47 -0.39 -1.44 16 25 C 0.07 0.97 7.28 -39.47 -0.29 0.68 16 26 F -0.13 -1.94 17.26 2.25 0.04 -1.91 16 27 C -0.06 -0.97 10.07 -39.19 -0.39 -1.36 16 28 C -0.16 -2.49 6.32 -105.16 -0.66 -3.15 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.84 8.03 -51.93 -0.42 0.42 16 33 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 34 H 0.03 0.76 7.40 -51.93 -0.38 0.37 16 35 H 0.04 1.09 7.21 -51.93 -0.37 0.71 16 36 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 37 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 38 H 0.41 6.80 7.40 -40.82 -0.30 6.49 16 39 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.15 1.14 8.06 -52.48 -0.42 0.71 16 43 H 0.15 2.49 8.06 -52.49 -0.42 2.06 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -30.61 372.16 -7.24 -37.85 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.62 Total: 5.64 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.71 Total: 5.13 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.29 Total: -53.61 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.18 Total: -13.42 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.61 -7.24 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569142042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.356 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds