Wall clock time and date at job start Tue Mar 31 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00383 * 2 1 4 4 C 1.52997 * 109.47099 * 270.00065 * 3 2 1 5 5 H 1.08994 * 109.47399 * 304.99563 * 4 3 2 6 6 O 1.42900 * 109.47181 * 64.99951 * 4 3 2 7 7 C 1.53005 * 109.47003 * 184.99626 * 4 3 2 8 8 N 1.46494 * 109.46919 * 179.97438 * 7 4 3 9 9 C 1.36941 * 119.99876 * 179.72382 * 8 7 4 10 10 H 1.07992 * 120.00118 * 0.28161 * 9 8 7 11 11 C 1.38817 * 119.99785 * 180.27793 * 9 8 7 12 12 N 1.31616 * 119.99526 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00160 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47139 * 89.99951 * 13 11 9 15 15 H 1.48508 * 109.46727 * 210.00106 * 13 11 9 16 16 H 1.48502 * 109.47219 * 329.99873 * 13 11 9 17 17 C 1.34779 * 119.99778 * 180.02562 * 2 1 3 18 18 O 1.21560 * 119.99873 * 177.28965 * 17 2 1 19 19 C 1.47850 * 120.00037 * 357.28990 * 17 2 1 20 20 C 1.39720 * 119.43792 * 186.90521 * 19 17 2 21 21 C 1.36995 * 119.59506 * 179.97438 * 20 19 17 22 22 C 1.39901 * 118.36839 * 359.97438 * 21 20 19 23 23 N 1.35426 * 133.68484 * 180.02562 * 22 21 20 24 24 C 1.30938 * 109.56691 * 179.97438 * 23 22 21 25 25 O 1.35173 * 124.99439 * 179.97438 * 24 23 22 26 26 N 1.36390 * 110.00330 * 359.97438 * 24 23 22 27 27 H 0.97002 * 126.31384 * 179.97438 * 26 24 23 28 28 C 1.38255 * 107.36398 * 0.02562 * 26 24 23 29 29 N 1.31766 * 133.71476 * 180.32798 * 28 26 24 30 30 H 1.09000 * 109.47104 * 96.11800 * 1 2 3 31 31 H 1.08996 * 109.47050 * 216.11505 * 1 2 3 32 32 H 1.08998 * 109.46628 * 336.11793 * 1 2 3 33 33 H 1.08997 * 109.47227 * 150.00115 * 3 2 1 34 34 H 1.09005 * 109.46922 * 30.00059 * 3 2 1 35 35 H 0.96701 * 113.99939 * 59.99970 * 6 4 3 36 36 H 1.08999 * 109.46712 * 60.00038 * 7 4 3 37 37 H 1.08994 * 109.46992 * 300.00186 * 7 4 3 38 38 H 0.97007 * 120.00577 * 0.02562 * 8 7 4 39 39 H 0.97003 * 120.00144 * 180.02562 * 12 11 9 40 40 H 1.08002 * 120.20482 * 0.02562 * 20 19 17 41 41 H 1.07996 * 120.81783 * 180.02562 * 21 20 19 42 42 H 0.96708 * 113.99750 * 270.01623 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9643 0.9131 -1.9815 6 8 1.2062 1.9935 -2.0814 7 6 3.3239 2.9680 -1.4443 8 7 3.5686 3.3905 -2.8255 9 6 4.3246 4.5043 -3.0770 10 1 4.7441 5.0686 -2.2574 11 6 4.5516 4.9080 -4.3857 12 7 5.2786 5.9781 -4.6274 13 14 3.8253 3.9323 -5.8034 14 1 2.4801 4.4670 -6.1344 15 1 4.7106 4.0500 -6.9900 16 1 3.7082 2.5043 -5.4129 17 6 2.1389 -1.1672 -0.0005 18 8 3.3535 -1.1678 -0.0503 19 6 1.4008 -2.4470 0.0594 20 6 2.1096 -3.6423 0.2046 21 6 1.4289 -4.8298 0.2611 22 6 0.0331 -4.8009 0.1707 23 7 -0.9255 -5.7573 0.1908 24 6 -2.1040 -5.1996 0.0702 25 8 -3.2793 -5.8670 0.0520 26 7 -1.9711 -3.8462 -0.0342 27 1 -2.6915 -3.2042 -0.1334 28 6 -0.6202 -3.5583 0.0261 29 7 0.0754 -2.4401 -0.0182 30 1 -0.3633 -0.1095 -1.0218 31 1 -0.3633 -0.8302 0.6057 32 1 -0.3632 0.9397 0.4161 33 1 3.1500 1.1383 0.5138 34 1 1.6085 2.0283 0.5139 35 1 0.6957 2.6950 -1.6542 36 1 4.2747 2.7520 -0.9569 37 1 2.8122 3.7652 -0.9052 38 1 3.1915 2.8839 -3.5618 39 1 5.4370 6.2605 -5.5418 40 1 3.1874 -3.6301 0.2727 41 1 1.9568 -5.7653 0.3734 42 1 -3.5659 -6.1346 -0.8320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571588731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:52 Heat of formation + Delta-G solvation = 12.914547 kcal Electronic energy + Delta-G solvation = -28217.748466 eV Core-core repulsion = 24008.314406 eV Total energy + Delta-G solvation = -4209.434061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.96658 -40.54066 -39.02318 -37.75038 -37.21431 -35.47041 -34.31379 -34.10637 -31.93225 -31.48314 -30.49898 -29.40518 -26.90279 -26.07725 -24.44993 -23.77354 -22.41623 -22.34287 -21.26429 -20.40038 -19.87132 -18.45641 -18.05211 -17.71365 -17.53482 -16.73172 -16.41567 -16.19339 -15.69866 -15.27509 -15.15887 -14.91773 -14.44799 -14.16410 -14.06230 -13.81829 -13.42056 -13.30486 -12.93422 -12.78836 -12.75205 -12.53959 -12.36022 -12.18509 -11.83852 -11.64964 -11.29644 -11.19515 -10.84948 -10.79928 -10.46744 -10.17851 -9.88295 -9.56102 -9.51896 -9.44211 -8.99364 -8.88217 -8.53765 -7.20004 -5.73777 -3.08895 -0.14413 0.68961 1.43270 1.80609 2.55886 2.71889 2.95608 3.41650 3.43754 3.50051 3.50265 3.62226 3.94305 4.27243 4.33129 4.52860 4.61817 4.64734 4.89142 5.02915 5.05200 5.12726 5.21245 5.46753 5.50306 5.54920 5.56214 5.64594 5.72718 5.86126 5.88223 5.90060 5.90897 6.05632 6.38873 6.49190 6.65919 6.75707 6.95900 7.07399 7.21517 7.89104 7.94348 8.03498 8.45260 9.25374 9.97832 10.18271 11.44423 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.002298 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.347785 B =12179.383938 C =12480.467916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.584 5.584 3 C 0.085 3.915 4 C 0.082 3.918 5 H 0.101 0.899 6 O -0.554 6.554 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.276 1.276 17 C 0.567 3.433 18 O -0.524 6.524 19 C 0.126 3.874 20 C -0.118 4.118 21 C -0.025 4.025 22 C 0.035 3.965 23 N -0.479 5.479 24 C 0.476 3.524 25 O -0.437 6.437 26 N -0.586 5.586 27 H 0.431 0.569 28 C 0.240 3.760 29 N -0.439 5.439 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.369 0.631 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.366 0.634 39 H 0.259 0.741 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.051 -24.303 13.358 33.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.315 5.315 3 C -0.038 4.038 4 C 0.022 3.978 5 H 0.119 0.881 6 O -0.359 6.359 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.582 5.582 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.202 1.202 17 C 0.353 3.647 18 O -0.400 6.400 19 C -0.021 4.021 20 C -0.141 4.141 21 C -0.052 4.052 22 C -0.087 4.087 23 N -0.211 5.211 24 C 0.170 3.830 25 O -0.239 6.239 26 N -0.213 5.213 27 H 0.272 0.728 28 C 0.003 3.997 29 N -0.156 5.156 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.216 0.784 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.200 0.800 39 H 0.069 0.931 40 H 0.179 0.821 41 H 0.171 0.829 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -18.450 -24.673 13.563 33.662 hybrid contribution -1.175 0.212 -1.311 1.774 sum -19.625 -24.460 12.252 33.669 Atomic orbital electron populations 1.22422 0.78065 1.02721 1.03229 1.47597 1.08049 1.05203 1.70613 1.22343 0.98651 0.84349 0.98477 1.22607 0.85127 0.98201 0.91894 0.88110 1.86588 1.32461 1.59299 1.57507 1.21193 0.96898 0.93000 0.88659 1.42578 1.63109 1.32499 1.01363 1.19054 1.23615 1.01163 0.93628 0.89278 1.24665 0.99946 0.97581 0.96965 1.69708 1.43314 1.25735 1.19487 0.86498 0.78698 0.80136 0.82937 1.21091 1.21819 1.20239 1.17708 0.86539 0.82695 0.77805 1.90854 1.12481 1.86474 1.50181 1.21000 0.87326 0.94757 0.99066 1.21612 1.02732 0.90554 0.99204 1.20493 0.89622 0.99476 0.95601 1.19680 0.94707 0.89375 1.04919 1.70670 0.96103 1.30573 1.23720 1.20249 0.87053 0.78298 0.97360 1.84828 1.31494 1.72058 1.35529 1.43037 1.06488 1.08914 1.62884 0.72847 1.18698 0.84631 0.92020 1.04329 1.66986 1.07394 1.26525 1.14671 0.92097 0.88037 0.92337 0.88464 0.89654 0.78435 0.94557 0.95360 0.80050 0.93083 0.82063 0.82898 0.72378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 8.98 59.85 0.54 1.28 16 2 N -0.58 -7.05 2.84 -182.69 -0.52 -7.56 16 3 C 0.08 1.05 5.08 -4.05 -0.02 1.03 16 4 C 0.08 1.30 3.30 -26.73 -0.09 1.22 16 5 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 6 O -0.55 -8.61 12.64 -35.23 -0.45 -9.05 16 7 C 0.13 2.52 5.92 -4.04 -0.02 2.49 16 8 N -0.75 -18.53 5.30 -59.91 -0.32 -18.85 16 9 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 10 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 11 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 12 N -0.93 -29.96 13.97 55.49 0.78 -29.18 16 13 Si 0.89 23.15 27.74 -169.99 -4.71 18.44 16 14 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 16 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 17 C 0.57 7.60 7.64 -12.33 -0.09 7.51 16 18 O -0.52 -8.47 15.91 5.31 0.08 -8.38 16 19 C 0.13 1.41 6.63 -82.97 -0.55 0.86 16 20 C -0.12 -1.11 9.54 -39.48 -0.38 -1.49 16 21 C -0.02 -0.21 10.16 -39.41 -0.40 -0.61 16 22 C 0.03 0.34 7.24 -84.56 -0.61 -0.27 16 23 N -0.48 -4.58 11.30 -12.11 -0.14 -4.71 16 24 C 0.48 3.23 9.39 -88.77 -0.83 2.40 16 25 O -0.44 -1.65 13.62 -17.22 -0.23 -1.89 16 26 N -0.59 -3.61 6.25 -13.33 -0.08 -3.70 16 27 H 0.43 1.38 8.96 -40.82 -0.37 1.01 16 28 C 0.24 2.22 8.46 -155.52 -1.32 0.90 16 29 N -0.44 -4.44 5.99 -8.77 -0.05 -4.49 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.92 5.17 -53.65 -0.28 0.64 16 32 H 0.06 0.45 7.82 -51.93 -0.41 0.05 16 33 H 0.10 1.27 7.46 -51.93 -0.39 0.88 16 34 H 0.09 0.83 7.85 -51.93 -0.41 0.43 16 35 H 0.37 4.44 9.05 45.56 0.41 4.85 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.37 9.16 5.41 -40.82 -0.22 8.94 16 39 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 40 H 0.16 1.37 7.62 -52.49 -0.40 0.97 16 41 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.42 -0.68 9.06 45.56 0.41 -0.27 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -39.16 360.01 -7.60 -46.76 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.35 Total: 9.13 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -4.03 Total: 8.07 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.33 Total: -68.50 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.60 Total: -19.32 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.71 Total: 18.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -39.16 -7.60 -46.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571588731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.673 kcal (2) G-P(sol) polarization free energy of solvation -39.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds