Wall clock time and date at job start Tue Mar 31 2020 18:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00383 * 2 1 4 4 C 1.52997 * 109.47099 * 270.00065 * 3 2 1 5 5 H 1.08994 * 109.47399 * 304.99563 * 4 3 2 6 6 O 1.42900 * 109.47181 * 64.99951 * 4 3 2 7 7 C 1.53005 * 109.47003 * 184.99626 * 4 3 2 8 8 N 1.46494 * 109.46919 * 179.97438 * 7 4 3 9 9 C 1.36941 * 119.99876 * 179.72382 * 8 7 4 10 10 H 1.07992 * 120.00118 * 0.28161 * 9 8 7 11 11 C 1.38817 * 119.99785 * 180.27793 * 9 8 7 12 12 N 1.31616 * 119.99526 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00160 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47139 * 89.99951 * 13 11 9 15 15 H 1.48508 * 109.46727 * 210.00106 * 13 11 9 16 16 H 1.48502 * 109.47219 * 329.99873 * 13 11 9 17 17 C 1.34779 * 119.99778 * 180.02562 * 2 1 3 18 18 O 1.21560 * 119.99873 * 177.28965 * 17 2 1 19 19 C 1.47850 * 120.00037 * 357.28990 * 17 2 1 20 20 C 1.39720 * 119.43792 * 186.90521 * 19 17 2 21 21 C 1.36995 * 119.59506 * 179.97438 * 20 19 17 22 22 C 1.39901 * 118.36839 * 359.97438 * 21 20 19 23 23 N 1.35426 * 133.68484 * 180.02562 * 22 21 20 24 24 C 1.30938 * 109.56691 * 179.97438 * 23 22 21 25 25 O 1.35173 * 124.99439 * 179.97438 * 24 23 22 26 26 N 1.36390 * 110.00330 * 359.97438 * 24 23 22 27 27 H 0.97002 * 126.31384 * 179.97438 * 26 24 23 28 28 C 1.38255 * 107.36398 * 0.02562 * 26 24 23 29 29 N 1.31766 * 133.71476 * 180.32798 * 28 26 24 30 30 H 1.09000 * 109.47104 * 96.11800 * 1 2 3 31 31 H 1.08996 * 109.47050 * 216.11505 * 1 2 3 32 32 H 1.08998 * 109.46628 * 336.11793 * 1 2 3 33 33 H 1.08997 * 109.47227 * 150.00115 * 3 2 1 34 34 H 1.09005 * 109.46922 * 30.00059 * 3 2 1 35 35 H 0.96701 * 113.99939 * 59.99970 * 6 4 3 36 36 H 1.08999 * 109.46712 * 60.00038 * 7 4 3 37 37 H 1.08994 * 109.46992 * 300.00186 * 7 4 3 38 38 H 0.97007 * 120.00577 * 0.02562 * 8 7 4 39 39 H 0.97003 * 120.00144 * 180.02562 * 12 11 9 40 40 H 1.08002 * 120.20482 * 0.02562 * 20 19 17 41 41 H 1.07996 * 120.81783 * 180.02562 * 21 20 19 42 42 H 0.96708 * 113.99750 * 270.01623 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9643 0.9131 -1.9815 6 8 1.2062 1.9935 -2.0814 7 6 3.3239 2.9680 -1.4443 8 7 3.5686 3.3905 -2.8255 9 6 4.3246 4.5043 -3.0770 10 1 4.7441 5.0686 -2.2574 11 6 4.5516 4.9080 -4.3857 12 7 5.2786 5.9781 -4.6274 13 14 3.8253 3.9323 -5.8034 14 1 2.4801 4.4670 -6.1344 15 1 4.7106 4.0500 -6.9900 16 1 3.7082 2.5043 -5.4129 17 6 2.1389 -1.1672 -0.0005 18 8 3.3535 -1.1678 -0.0503 19 6 1.4008 -2.4470 0.0594 20 6 2.1096 -3.6423 0.2046 21 6 1.4289 -4.8298 0.2611 22 6 0.0331 -4.8009 0.1707 23 7 -0.9255 -5.7573 0.1908 24 6 -2.1040 -5.1996 0.0702 25 8 -3.2793 -5.8670 0.0520 26 7 -1.9711 -3.8462 -0.0342 27 1 -2.6915 -3.2042 -0.1334 28 6 -0.6202 -3.5583 0.0261 29 7 0.0754 -2.4401 -0.0182 30 1 -0.3633 -0.1095 -1.0218 31 1 -0.3633 -0.8302 0.6057 32 1 -0.3632 0.9397 0.4161 33 1 3.1500 1.1383 0.5138 34 1 1.6085 2.0283 0.5139 35 1 0.6957 2.6950 -1.6542 36 1 4.2747 2.7520 -0.9569 37 1 2.8122 3.7652 -0.9052 38 1 3.1915 2.8839 -3.5618 39 1 5.4370 6.2605 -5.5418 40 1 3.1874 -3.6301 0.2727 41 1 1.9568 -5.7653 0.3734 42 1 -3.5659 -6.1346 -0.8320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571588731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:51 Heat of formation + Delta-G solvation = -22.953748 kcal Electronic energy + Delta-G solvation = -28219.303832 eV Core-core repulsion = 24008.314406 eV Total energy + Delta-G solvation = -4210.989427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.57659 -41.42236 -39.73940 -38.84384 -37.86478 -36.60534 -35.90934 -34.93624 -33.50528 -32.56885 -31.60386 -30.46404 -27.99921 -27.24819 -25.34490 -24.66735 -23.88252 -22.92407 -22.80952 -21.24938 -20.41570 -19.81829 -19.12477 -18.60626 -18.40443 -17.74579 -17.23857 -17.10218 -16.74537 -16.53373 -16.26374 -16.02677 -15.78012 -15.33492 -15.03806 -14.93142 -14.71174 -14.38547 -14.18913 -13.89298 -13.73014 -13.44622 -13.28752 -13.24330 -13.13969 -12.84721 -12.59783 -12.46054 -12.29237 -11.97952 -11.94140 -11.86606 -11.46288 -11.16686 -11.03596 -10.21647 -10.14870 -9.70921 -9.49543 -9.32374 -8.05256 -5.37919 -0.82639 0.01484 0.90121 1.16011 1.36865 1.38284 1.46520 1.73456 1.84517 2.39423 2.46067 2.65090 3.00349 3.25308 3.25592 3.37696 3.58562 3.68826 3.75129 3.89217 3.97136 4.08938 4.24674 4.41179 4.46646 4.49903 4.55537 4.71188 4.86148 4.89493 4.92416 4.93563 5.15348 5.19924 5.33581 5.51423 5.65874 5.72486 6.17339 6.19194 6.34389 6.38514 6.59287 6.85901 6.97772 7.05838 7.82435 8.00565 9.16036 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.002298 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.347785 B =12179.383938 C =12480.467916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.583 5.583 3 C 0.092 3.908 4 C 0.100 3.900 5 H 0.071 0.929 6 O -0.563 6.563 7 C 0.126 3.874 8 N -0.755 5.755 9 C -0.234 4.234 10 H 0.061 0.939 11 C -0.062 4.062 12 N -0.981 5.981 13 Si 0.956 3.044 14 H -0.276 1.276 15 H -0.294 1.294 16 H -0.265 1.265 17 C 0.561 3.439 18 O -0.563 6.563 19 C 0.103 3.897 20 C -0.118 4.118 21 C -0.023 4.023 22 C 0.026 3.974 23 N -0.513 5.513 24 C 0.497 3.503 25 O -0.434 6.434 26 N -0.572 5.572 27 H 0.445 0.555 28 C 0.229 3.771 29 N -0.436 5.436 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.387 0.613 36 H 0.031 0.969 37 H 0.047 0.953 38 H 0.366 0.634 39 H 0.259 0.741 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.021 -26.094 13.767 36.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.313 5.313 3 C -0.031 4.031 4 C 0.040 3.960 5 H 0.090 0.910 6 O -0.370 6.370 7 C -0.001 4.001 8 N -0.401 5.401 9 C -0.365 4.365 10 H 0.079 0.921 11 C -0.254 4.254 12 N -0.632 5.632 13 Si 0.784 3.216 14 H -0.202 1.202 15 H -0.220 1.220 16 H -0.190 1.190 17 C 0.348 3.652 18 O -0.441 6.441 19 C -0.044 4.044 20 C -0.142 4.142 21 C -0.050 4.050 22 C -0.096 4.096 23 N -0.246 5.246 24 C 0.192 3.808 25 O -0.240 6.240 26 N -0.201 5.201 27 H 0.289 0.711 28 C -0.010 4.010 29 N -0.153 5.153 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.236 0.764 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.199 0.801 39 H 0.067 0.933 40 H 0.182 0.818 41 H 0.193 0.807 42 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -21.512 -26.476 13.995 36.873 hybrid contribution -0.404 0.691 -1.343 1.564 sum -21.916 -25.785 12.651 36.128 Atomic orbital electron populations 1.22512 0.76321 1.04317 1.02962 1.47701 1.09069 1.04643 1.69844 1.22226 0.99349 0.85502 0.96038 1.22250 0.84598 0.95421 0.93760 0.91047 1.86556 1.32073 1.60195 1.58165 1.21425 0.97644 0.95138 0.85888 1.42623 1.62527 1.31248 1.03702 1.19074 1.22874 1.01679 0.92881 0.92065 1.25462 1.01125 0.98966 0.99849 1.69871 1.45448 1.27844 1.19992 0.85388 0.77930 0.79100 0.79163 1.20153 1.22028 1.18986 1.18090 0.86317 0.83726 0.77064 1.90820 1.14106 1.87160 1.52057 1.20757 0.87941 0.94211 1.01461 1.21657 1.02915 0.90453 0.99131 1.20714 0.89500 0.99937 0.94816 1.19969 0.95340 0.89759 1.04506 1.70674 0.96979 1.31084 1.25850 1.20323 0.87307 0.78474 0.94733 1.84811 1.29898 1.71528 1.37789 1.42978 1.05821 1.09120 1.62188 0.71124 1.18830 0.85755 0.91700 1.04718 1.66888 1.06947 1.26928 1.14530 0.92965 0.87514 0.89937 0.89321 0.86122 0.76404 0.95081 0.93474 0.80122 0.93260 0.81791 0.80671 0.69331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 8.98 127.77 1.15 2.49 16 2 N -0.58 -13.32 2.84 -850.19 -2.41 -15.73 16 3 C 0.09 2.14 5.08 86.38 0.44 2.57 16 4 C 0.10 3.07 3.30 30.59 0.10 3.17 16 5 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 6 O -0.56 -16.23 12.64 -148.98 -1.88 -18.11 16 7 C 0.13 4.74 5.92 86.38 0.51 5.25 16 8 N -0.76 -36.89 5.30 -343.46 -1.82 -38.71 16 9 C -0.23 -13.76 10.47 84.03 0.88 -12.88 16 10 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 11 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 12 N -0.98 -64.09 13.97 21.65 0.30 -63.78 16 13 Si 0.96 48.01 27.74 68.60 1.90 49.91 16 14 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 16 H -0.26 -12.61 6.52 99.48 0.65 -11.96 16 17 C 0.56 15.00 7.64 86.79 0.66 15.67 16 18 O -0.56 -18.64 15.91 -3.91 -0.06 -18.70 16 19 C 0.10 2.27 6.63 41.91 0.28 2.55 16 20 C -0.12 -2.20 9.54 22.34 0.21 -1.99 16 21 C -0.02 -0.36 10.16 22.38 0.23 -0.13 16 22 C 0.03 0.47 7.24 39.70 0.29 0.76 16 23 N -0.51 -8.90 11.30 -306.03 -3.46 -12.35 16 24 C 0.50 5.54 9.39 179.70 1.69 7.22 16 25 O -0.43 -1.94 13.62 -84.52 -1.15 -3.09 16 26 N -0.57 -5.71 6.25 -307.03 -1.92 -7.63 16 27 H 0.44 1.64 8.96 -92.71 -0.83 0.80 16 28 C 0.23 3.86 8.46 134.00 1.13 4.99 16 29 N -0.44 -8.32 5.99 -181.67 -1.09 -9.40 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.72 5.17 -5.78 -0.03 1.69 16 32 H 0.08 0.98 7.82 -2.39 -0.02 0.96 16 33 H 0.09 2.25 7.46 -2.39 -0.02 2.24 16 34 H 0.12 1.94 7.85 -2.38 -0.02 1.92 16 35 H 0.39 8.08 9.05 -74.06 -0.67 7.41 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.37 17.84 5.41 -92.70 -0.50 17.34 16 39 H 0.26 16.06 8.31 -92.71 -0.77 15.28 16 40 H 0.16 2.86 7.62 -2.91 -0.02 2.84 16 41 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.44 -2.96 9.06 -74.05 -0.67 -3.63 16 Total: -1.00 -85.82 360.01 -5.16 -90.99 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -1.61 Total: 20.27 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 8.04 Total: 26.35 kcal Atomic # 7 Polarization: -137.21 SS G_CDS: -10.39 Total: -147.61 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -3.10 Total: -39.91 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.90 Total: 49.91 kcal Total: -85.82 -5.16 -90.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571588731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.034 kcal (2) G-P(sol) polarization free energy of solvation -85.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds