Wall clock time and date at job start Tue Mar 31 2020 18:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37842 * 127.14047 * 2 1 4 4 C 1.46880 * 126.48873 * 0.02562 * 3 2 1 5 5 N 1.33071 * 120.34187 * 0.02562 * 4 3 2 6 6 C 1.31478 * 121.63147 * 179.97438 * 5 4 3 7 7 C 1.38858 * 122.19367 * 359.97438 * 6 5 4 8 8 C 1.36703 * 120.45240 * 0.02562 * 7 6 5 9 9 C 1.41283 * 118.37873 * 359.97438 * 8 7 6 10 10 C 1.40651 * 120.99050 * 180.27302 * 9 8 7 11 11 H 1.07994 * 120.00533 * 149.69973 * 10 9 8 12 12 C 1.40000 * 119.99684 * 329.69666 * 10 9 8 13 13 N 1.30819 * 120.00327 * 349.72478 * 12 10 9 14 14 Si 1.86804 * 119.99590 * 169.72847 * 12 10 9 15 15 H 1.48490 * 109.47327 * 90.00227 * 14 12 10 16 16 H 1.48505 * 109.46506 * 210.00139 * 14 12 10 17 17 H 1.48500 * 109.47095 * 329.99415 * 14 12 10 18 18 N 1.31818 * 107.01894 * 180.26382 * 3 2 1 19 19 N 1.28529 * 109.83675 * 359.56203 * 18 3 2 20 20 C 1.31866 * 110.07533 * 0.45160 * 19 18 3 21 21 N 1.37889 * 126.32905 * 179.76190 * 20 19 18 22 22 C 1.47847 * 111.00095 * 120.79734 * 21 20 19 23 23 C 1.54908 * 104.79820 * 213.63732 * 22 21 20 24 24 C 1.55131 * 101.65088 * 37.07528 * 23 22 21 25 25 F 1.39904 * 110.70850 * 205.96313 * 24 23 22 26 26 F 1.39902 * 110.71038 * 82.72840 * 24 23 22 27 27 C 1.47444 * 110.99855 * 359.96167 * 21 20 19 28 28 H 1.09001 * 109.47099 * 90.01910 * 1 2 3 29 29 H 1.08992 * 109.47445 * 210.02622 * 1 2 3 30 30 H 1.08999 * 109.46917 * 330.02377 * 1 2 3 31 31 H 1.07999 * 118.90212 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.77090 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.81236 * 180.02562 * 8 7 6 34 34 H 0.96993 * 119.99916 * 180.02562 * 13 12 10 35 35 H 1.08993 * 110.37544 * 332.47506 * 22 21 20 36 36 H 1.09008 * 110.37111 * 94.81207 * 22 21 20 37 37 H 1.08997 * 110.99253 * 278.98033 * 23 22 21 38 38 H 1.08998 * 110.98936 * 155.16391 * 23 22 21 39 39 H 1.09000 * 109.88845 * 242.66206 * 27 21 20 40 40 H 1.08996 * 109.88897 * 3.68719 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2972 1.0988 0.0000 4 6 1.8833 2.5081 0.0005 5 7 0.5919 2.8293 0.0016 6 6 0.1930 4.0822 0.0026 7 6 1.0883 5.1436 0.0031 8 6 2.4358 4.9134 0.0021 9 6 2.8884 3.5751 0.0010 10 6 4.2626 3.2753 0.0057 11 1 4.6164 2.3703 0.4770 12 6 5.1719 4.1501 -0.6008 13 7 4.7361 5.1361 -1.3419 14 14 7.0076 3.9094 -0.3517 15 1 7.5385 3.0176 -1.4136 16 1 7.6931 5.2249 -0.4215 17 1 7.2502 3.2948 0.9782 18 7 3.5350 0.6454 -0.0058 19 7 3.5286 -0.6399 -0.0001 20 6 2.2878 -1.0864 -0.0001 21 7 1.8954 -2.4083 0.0005 22 6 1.0669 -2.7145 1.1862 23 6 1.4163 -4.1803 1.5452 24 6 2.9353 -4.2257 1.2332 25 9 3.3378 -5.5291 0.9228 26 9 3.6762 -3.7202 2.3068 27 6 3.0646 -3.3066 0.0003 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 -0.8662 4.2927 0.0030 32 1 0.7175 6.1579 0.0044 33 1 3.1373 5.7346 0.0029 34 1 5.3662 5.7420 -1.7624 35 1 1.3243 -2.0500 2.0109 36 1 0.0081 -2.6256 0.9425 37 1 0.8669 -4.8786 0.9138 38 1 1.2284 -4.3793 2.6002 39 1 3.0714 -3.9061 -0.9100 40 1 3.9818 -2.7214 0.0656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646662305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:00 Heat of formation + Delta-G solvation = 34.176389 kcal Electronic energy + Delta-G solvation = -29025.228624 eV Core-core repulsion = 24705.629031 eV Total energy + Delta-G solvation = -4319.599594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.05697 -47.21984 -42.13161 -38.72194 -38.05166 -34.54060 -34.07433 -32.24254 -30.86097 -30.52784 -29.03321 -27.70529 -27.02779 -25.79140 -23.10384 -22.79524 -21.87756 -21.62081 -20.17518 -19.96781 -17.92484 -17.59760 -17.45032 -16.63864 -16.17717 -15.80797 -15.73233 -15.51634 -15.13586 -14.63492 -14.27566 -14.16907 -14.00197 -13.76928 -13.52220 -13.13401 -12.94098 -12.91642 -12.82516 -12.45068 -12.41685 -12.12571 -11.97577 -11.82196 -11.56837 -11.51499 -11.14805 -11.06524 -10.86520 -10.52651 -10.17881 -9.85634 -9.53444 -9.50665 -9.33130 -8.61770 -8.34735 -8.10635 -7.22177 -7.00858 -4.60579 1.82844 2.56148 2.64726 2.87380 3.01066 3.08708 3.15971 3.38822 3.52566 3.70055 3.78484 3.82280 3.96113 4.28763 4.50170 4.75774 4.80474 4.99771 5.03154 5.17592 5.22986 5.37971 5.43792 5.48545 5.56353 5.62123 5.64235 5.84243 6.01706 6.13163 6.26574 6.35849 6.61898 6.65288 6.72061 6.85552 6.98703 7.13653 7.54317 7.58980 7.75089 7.83464 8.39233 8.48700 8.56756 9.29287 9.52667 9.84254 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.003884 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.459395 B = 7206.793775 C = 8915.837243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.474 5.474 3 C 0.300 3.700 4 C 0.004 3.996 5 N -0.447 5.447 6 C -0.037 4.037 7 C -0.139 4.139 8 C -0.124 4.124 9 C 0.100 3.900 10 C -0.387 4.387 11 H 0.118 0.882 12 C 0.068 3.932 13 N -0.775 5.775 14 Si 0.923 3.077 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.254 1.254 18 N -0.273 5.273 19 N -0.320 5.320 20 C 0.301 3.699 21 N -0.429 5.429 22 C 0.037 3.963 23 C -0.160 4.160 24 C 0.265 3.735 25 F -0.189 7.189 26 F -0.186 7.186 27 C 0.013 3.987 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.288 0.712 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 -11.504 3.552 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.169 5.169 3 C 0.039 3.961 4 C -0.135 4.135 5 N -0.156 5.156 6 C -0.201 4.201 7 C -0.160 4.160 8 C -0.150 4.150 9 C 0.093 3.907 10 C -0.415 4.415 11 H 0.136 0.864 12 C -0.153 4.153 13 N -0.398 5.398 14 Si 0.747 3.253 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.178 1.178 18 N -0.114 5.114 19 N -0.167 5.167 20 C -0.055 4.055 21 N -0.152 5.152 22 C -0.089 4.089 23 C -0.198 4.198 24 C 0.228 3.772 25 F -0.169 7.169 26 F -0.167 7.167 27 C -0.116 4.116 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.812 -12.139 2.955 13.779 hybrid contribution 0.278 0.746 0.490 0.935 sum -5.534 -11.393 3.445 13.125 Atomic orbital electron populations 1.22141 0.75575 1.04461 1.03655 1.45884 1.08360 1.05103 1.57525 1.22326 0.85163 0.87367 1.01222 1.18836 0.88823 0.86121 1.19725 1.66759 1.17150 1.22015 1.09689 1.21390 0.97855 0.87526 1.13352 1.21335 0.94861 0.98488 1.01350 1.21405 0.94247 0.96957 1.02385 1.19141 0.93048 0.90255 0.88298 1.20282 0.90522 1.05675 1.25041 0.86402 1.26250 1.03149 0.93114 0.92800 1.69776 1.38459 1.11708 1.19873 0.86022 0.79779 0.78555 0.80984 1.18766 1.20055 1.17751 1.74770 1.15845 1.00044 1.20757 1.74550 1.14899 1.05415 1.21790 1.22120 0.88069 0.86502 1.08780 1.60146 1.18217 0.98240 1.38642 1.23301 0.99609 0.94974 0.91049 1.23703 0.92368 0.98570 1.05205 1.22146 0.90628 0.78421 0.86017 1.93017 1.92315 1.38448 1.93166 1.93070 1.79117 1.86900 1.57610 1.23832 0.95705 0.95045 0.96971 0.91083 0.91144 0.87159 0.86019 0.88151 0.85322 0.90059 0.91410 0.87769 0.86939 0.87752 0.86470 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.55 59.85 0.63 1.91 16 2 N -0.47 -9.24 3.23 -122.27 -0.40 -9.64 16 3 C 0.30 7.09 7.75 -153.47 -1.19 5.90 16 4 C 0.00 0.09 6.96 -80.47 -0.56 -0.46 16 5 N -0.45 -10.03 7.88 -8.14 -0.06 -10.09 16 6 C -0.04 -0.77 11.11 -17.47 -0.19 -0.97 16 7 C -0.14 -2.97 9.98 -39.91 -0.40 -3.36 16 8 C -0.12 -2.97 8.72 -38.98 -0.34 -3.31 16 9 C 0.10 2.56 5.70 -104.46 -0.60 1.97 16 10 C -0.39 -9.96 8.11 -38.01 -0.31 -10.26 16 11 H 0.12 3.12 5.77 -52.49 -0.30 2.81 16 12 C 0.07 1.63 5.28 -17.32 -0.09 1.54 16 13 N -0.78 -18.61 10.97 55.55 0.61 -18.00 16 14 Si 0.92 18.51 29.57 -169.99 -5.03 13.48 16 15 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.25 -5.13 7.11 56.52 0.40 -4.72 16 18 N -0.27 -6.75 9.27 32.50 0.30 -6.45 16 19 N -0.32 -7.10 10.45 30.25 0.32 -6.78 16 20 C 0.30 5.67 6.95 -319.29 -2.22 3.45 16 21 N -0.43 -6.13 5.20 -171.40 -0.89 -7.02 16 22 C 0.04 0.41 5.50 -2.30 -0.01 0.40 16 23 C -0.16 -1.39 6.68 -24.60 -0.16 -1.56 16 24 C 0.27 3.14 2.56 -24.91 -0.06 3.07 16 25 F -0.19 -2.22 17.18 2.25 0.04 -2.19 16 26 F -0.19 -2.67 17.19 2.25 0.04 -2.64 16 27 C 0.01 0.17 6.45 -2.83 -0.02 0.16 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.80 5.39 -51.93 -0.28 0.52 16 30 H 0.11 1.78 6.30 -51.93 -0.33 1.45 16 31 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.13 3.09 6.44 -52.49 -0.34 2.75 16 34 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 35 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 36 H 0.10 0.89 6.64 -51.92 -0.35 0.55 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.12 1.31 8.10 -51.93 -0.42 0.89 16 40 H 0.12 1.93 6.27 -51.93 -0.33 1.61 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -29.44 336.13 -9.52 -38.96 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.99 Total: 6.82 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -5.52 Total: -1.54 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.12 Total: -57.97 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.08 Total: -4.82 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.44 -9.52 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646662305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.138 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds