Wall clock time and date at job start Tue Mar 31 2020 18:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37842 * 127.14047 * 2 1 4 4 C 1.46880 * 126.48873 * 0.02562 * 3 2 1 5 5 N 1.33071 * 120.34187 * 0.02562 * 4 3 2 6 6 C 1.31478 * 121.63147 * 179.97438 * 5 4 3 7 7 C 1.38858 * 122.19367 * 359.97438 * 6 5 4 8 8 C 1.36703 * 120.45240 * 0.02562 * 7 6 5 9 9 C 1.41283 * 118.37873 * 359.97438 * 8 7 6 10 10 C 1.40651 * 120.99050 * 180.27302 * 9 8 7 11 11 H 1.07994 * 120.00533 * 149.69973 * 10 9 8 12 12 C 1.40000 * 119.99684 * 329.69666 * 10 9 8 13 13 N 1.30819 * 120.00327 * 349.72478 * 12 10 9 14 14 Si 1.86804 * 119.99590 * 169.72847 * 12 10 9 15 15 H 1.48490 * 109.47327 * 90.00227 * 14 12 10 16 16 H 1.48505 * 109.46506 * 210.00139 * 14 12 10 17 17 H 1.48500 * 109.47095 * 329.99415 * 14 12 10 18 18 N 1.31818 * 107.01894 * 180.26382 * 3 2 1 19 19 N 1.28529 * 109.83675 * 359.56203 * 18 3 2 20 20 C 1.31866 * 110.07533 * 0.45160 * 19 18 3 21 21 N 1.37889 * 126.32905 * 179.76190 * 20 19 18 22 22 C 1.47847 * 111.00095 * 120.79734 * 21 20 19 23 23 C 1.54908 * 104.79820 * 213.63732 * 22 21 20 24 24 C 1.55131 * 101.65088 * 37.07528 * 23 22 21 25 25 F 1.39904 * 110.70850 * 205.96313 * 24 23 22 26 26 F 1.39902 * 110.71038 * 82.72840 * 24 23 22 27 27 C 1.47444 * 110.99855 * 359.96167 * 21 20 19 28 28 H 1.09001 * 109.47099 * 90.01910 * 1 2 3 29 29 H 1.08992 * 109.47445 * 210.02622 * 1 2 3 30 30 H 1.08999 * 109.46917 * 330.02377 * 1 2 3 31 31 H 1.07999 * 118.90212 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.77090 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.81236 * 180.02562 * 8 7 6 34 34 H 0.96993 * 119.99916 * 180.02562 * 13 12 10 35 35 H 1.08993 * 110.37544 * 332.47506 * 22 21 20 36 36 H 1.09008 * 110.37111 * 94.81207 * 22 21 20 37 37 H 1.08997 * 110.99253 * 278.98033 * 23 22 21 38 38 H 1.08998 * 110.98936 * 155.16391 * 23 22 21 39 39 H 1.09000 * 109.88845 * 242.66206 * 27 21 20 40 40 H 1.08996 * 109.88897 * 3.68719 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2972 1.0988 0.0000 4 6 1.8833 2.5081 0.0005 5 7 0.5919 2.8293 0.0016 6 6 0.1930 4.0822 0.0026 7 6 1.0883 5.1436 0.0031 8 6 2.4358 4.9134 0.0021 9 6 2.8884 3.5751 0.0010 10 6 4.2626 3.2753 0.0057 11 1 4.6164 2.3703 0.4770 12 6 5.1719 4.1501 -0.6008 13 7 4.7361 5.1361 -1.3419 14 14 7.0076 3.9094 -0.3517 15 1 7.5385 3.0176 -1.4136 16 1 7.6931 5.2249 -0.4215 17 1 7.2502 3.2948 0.9782 18 7 3.5350 0.6454 -0.0058 19 7 3.5286 -0.6399 -0.0001 20 6 2.2878 -1.0864 -0.0001 21 7 1.8954 -2.4083 0.0005 22 6 1.0669 -2.7145 1.1862 23 6 1.4163 -4.1803 1.5452 24 6 2.9353 -4.2257 1.2332 25 9 3.3378 -5.5291 0.9228 26 9 3.6762 -3.7202 2.3068 27 6 3.0646 -3.3066 0.0003 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 -0.8662 4.2927 0.0030 32 1 0.7175 6.1579 0.0044 33 1 3.1373 5.7346 0.0029 34 1 5.3662 5.7420 -1.7624 35 1 1.3243 -2.0500 2.0109 36 1 0.0081 -2.6256 0.9425 37 1 0.8669 -4.8786 0.9138 38 1 1.2284 -4.3793 2.6002 39 1 3.0714 -3.9061 -0.9100 40 1 3.9818 -2.7214 0.0656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646662305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:59 Heat of formation + Delta-G solvation = 18.811763 kcal Electronic energy + Delta-G solvation = -29025.894885 eV Core-core repulsion = 24705.629031 eV Total energy + Delta-G solvation = -4320.265854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.03787 -48.21182 -43.70211 -40.04013 -39.60573 -36.20642 -35.68919 -33.55525 -32.56739 -32.04042 -30.07381 -29.26408 -28.36621 -27.55935 -24.55237 -24.15004 -23.35130 -22.83429 -21.67100 -21.48103 -19.30398 -18.93283 -18.70983 -17.92288 -17.52779 -17.29198 -17.07543 -16.89701 -16.67549 -15.94404 -15.77338 -15.48729 -15.23388 -14.89905 -14.53096 -14.49789 -14.35443 -14.14486 -14.01070 -13.93109 -13.75330 -13.65489 -13.30966 -13.20803 -13.03288 -12.82731 -12.66640 -12.54797 -12.16174 -11.95353 -11.60420 -11.50614 -11.27716 -11.02828 -10.94458 -10.27855 -10.02848 -9.78822 -8.94011 -8.74498 -6.45675 0.13916 0.90696 1.17013 1.28868 1.35572 1.47175 1.51877 2.03458 2.17164 2.42035 2.53263 2.69514 2.71666 2.96979 3.35453 3.42704 3.65282 3.80659 3.92024 3.96681 3.98378 4.12249 4.34599 4.47289 4.50089 4.51842 4.60419 4.62729 4.72089 4.76234 4.80661 4.86599 4.92126 5.12155 5.14892 5.23970 5.31860 5.50561 5.81589 5.85603 6.06250 6.20785 6.55747 6.63683 6.76351 7.52853 7.87973 8.11360 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.003884 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.459395 B = 7206.793775 C = 8915.837243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.471 5.471 3 C 0.273 3.727 4 C -0.015 4.015 5 N -0.445 5.445 6 C -0.032 4.032 7 C -0.133 4.133 8 C -0.145 4.145 9 C 0.072 3.928 10 C -0.423 4.423 11 H 0.099 0.901 12 C 0.038 3.962 13 N -0.800 5.800 14 Si 0.981 3.019 15 H -0.269 1.269 16 H -0.252 1.252 17 H -0.262 1.262 18 N -0.308 5.308 19 N -0.360 5.360 20 C 0.327 3.673 21 N -0.422 5.422 22 C 0.032 3.968 23 C -0.141 4.141 24 C 0.261 3.739 25 F -0.187 7.187 26 F -0.205 7.205 27 C 0.008 3.992 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.297 0.703 35 H 0.050 0.950 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -12.909 3.768 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.166 5.166 3 C 0.010 3.990 4 C -0.153 4.153 5 N -0.154 5.154 6 C -0.196 4.196 7 C -0.154 4.154 8 C -0.171 4.171 9 C 0.065 3.935 10 C -0.451 4.451 11 H 0.117 0.883 12 C -0.181 4.181 13 N -0.424 5.424 14 Si 0.801 3.199 15 H -0.194 1.194 16 H -0.176 1.176 17 H -0.186 1.186 18 N -0.148 5.148 19 N -0.206 5.206 20 C -0.030 4.030 21 N -0.146 5.146 22 C -0.094 4.094 23 C -0.179 4.179 24 C 0.224 3.776 25 F -0.168 7.168 26 F -0.187 7.187 27 C -0.121 4.121 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.182 0.818 32 H 0.155 0.845 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.465 -13.553 3.176 16.292 hybrid contribution 0.880 1.042 0.414 1.425 sum -7.585 -12.511 3.590 15.065 Atomic orbital electron populations 1.22417 0.72967 1.06068 1.04644 1.46044 1.09742 1.04030 1.56735 1.22262 0.85748 0.88131 1.02887 1.19077 0.89468 0.86675 1.20050 1.66881 1.15918 1.22791 1.09834 1.22177 0.99854 0.86923 1.10663 1.21726 0.93746 1.00608 0.99330 1.21445 0.95582 0.96152 1.03916 1.19500 0.93612 0.91479 0.88876 1.20248 0.91484 1.06070 1.27282 0.88314 1.26838 1.06310 0.92727 0.92189 1.69772 1.39793 1.12389 1.20475 0.85205 0.75550 0.79140 0.79973 1.19416 1.17609 1.18604 1.74674 1.17328 1.01399 1.21432 1.74493 1.17043 1.04614 1.24453 1.22574 0.87190 0.88112 1.05165 1.60353 1.18445 0.95607 1.40183 1.23536 1.00618 0.96181 0.89038 1.23769 0.89365 0.97365 1.07358 1.22322 0.92535 0.77937 0.84799 1.93021 1.92534 1.38090 1.93109 1.93038 1.79966 1.87251 1.58404 1.23894 0.94108 0.95030 0.99048 0.90280 0.87021 0.88112 0.81827 0.84522 0.86167 0.89161 0.93141 0.84332 0.83788 0.85524 0.84311 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.55 127.77 1.35 3.59 16 2 N -0.47 -18.24 3.23 -540.76 -1.75 -19.99 16 3 C 0.27 13.34 7.75 135.68 1.05 14.39 16 4 C -0.01 -0.75 6.96 43.40 0.30 -0.45 16 5 N -0.44 -19.63 7.88 -179.68 -1.42 -21.05 16 6 C -0.03 -1.25 11.11 84.89 0.94 -0.31 16 7 C -0.13 -5.49 9.98 22.06 0.22 -5.27 16 8 C -0.14 -7.07 8.72 22.66 0.20 -6.87 16 9 C 0.07 3.88 5.70 -19.76 -0.11 3.76 16 10 C -0.42 -23.05 8.11 23.29 0.19 -22.86 16 11 H 0.10 5.65 5.77 -2.91 -0.02 5.63 16 12 C 0.04 1.89 5.28 85.27 0.45 2.34 16 13 N -0.80 -39.67 10.97 21.84 0.24 -39.43 16 14 Si 0.98 39.54 29.57 68.60 2.03 41.57 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 18 N -0.31 -16.06 9.27 -51.08 -0.47 -16.53 16 19 N -0.36 -16.65 10.45 -58.20 -0.61 -17.26 16 20 C 0.33 12.26 6.95 260.26 1.81 14.07 16 21 N -0.42 -11.24 5.20 -696.18 -3.62 -14.86 16 22 C 0.03 0.58 5.50 86.77 0.48 1.06 16 23 C -0.14 -1.86 6.68 31.98 0.21 -1.65 16 24 C 0.26 5.66 2.56 31.77 0.08 5.75 16 25 F -0.19 -3.98 17.18 44.97 0.77 -3.21 16 26 F -0.21 -5.80 17.19 44.97 0.77 -5.03 16 27 C 0.01 0.19 6.45 86.65 0.56 0.75 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.11 2.11 5.39 -2.39 -0.01 2.10 16 30 H 0.10 3.06 6.30 -2.39 -0.02 3.05 16 31 H 0.16 5.08 8.06 -2.91 -0.02 5.06 16 32 H 0.14 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.12 5.97 6.44 -2.91 -0.02 5.95 16 34 H 0.30 13.15 8.30 -92.71 -0.77 12.38 16 35 H 0.05 1.15 7.79 -2.39 -0.02 1.13 16 36 H 0.14 1.62 6.64 -2.38 -0.02 1.60 16 37 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.14 2.87 8.10 -2.39 -0.02 2.85 16 40 H 0.09 2.98 6.27 -2.39 -0.01 2.96 16 Total: -1.00 -69.40 336.13 4.79 -64.61 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 1.11 Total: 22.88 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 7.73 Total: 8.30 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -7.63 Total: -129.13 kcal Atomic # 9 Polarization: -9.79 SS G_CDS: 1.55 Total: -8.24 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -69.40 4.79 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646662305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.424 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds