Wall clock time and date at job start Tue Mar 31 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21288 * 119.99679 * 2 1 4 4 N 1.34773 * 120.00060 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00061 * 356.45565 * 4 2 1 6 6 C 1.39578 * 120.00031 * 176.45985 * 4 2 1 7 7 C 1.39029 * 119.62227 * 53.30899 * 6 4 2 8 8 C 1.38293 * 119.17748 * 179.97438 * 7 6 4 9 9 C 1.39378 * 118.43183 * 359.97438 * 8 7 6 10 10 N 1.40156 * 120.41331 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99386 * 35.22648 * 10 9 8 12 12 O 1.21586 * 120.00360 * 357.20254 * 11 10 9 13 13 N 1.34778 * 119.99384 * 177.20236 * 11 10 9 14 14 C 1.46505 * 119.99687 * 179.72185 * 13 11 10 15 15 C 1.50698 * 109.47005 * 180.28022 * 14 13 11 16 16 O 1.21287 * 120.00138 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99947 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00355 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99683 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00295 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00090 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00154 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46956 * 59.99570 * 22 20 18 24 24 H 1.48489 * 109.47442 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46963 * 299.99851 * 22 20 18 26 26 C 1.38679 * 119.17724 * 0.25741 * 9 8 7 27 27 N 1.31920 * 120.74902 * 359.47287 * 26 9 8 28 28 H 1.08993 * 109.47545 * 264.56322 * 1 2 3 29 29 H 1.09000 * 109.47447 * 24.56455 * 1 2 3 30 30 H 1.09002 * 109.46717 * 144.56086 * 1 2 3 31 31 H 1.09002 * 109.47112 * 276.49032 * 5 4 2 32 32 H 1.09004 * 109.47164 * 36.48475 * 5 4 2 33 33 H 1.09003 * 109.47126 * 156.48774 * 5 4 2 34 34 H 1.07999 * 120.40974 * 359.95662 * 7 6 4 35 35 H 1.08000 * 120.78414 * 179.97438 * 8 7 6 36 36 H 0.97000 * 120.00368 * 215.22248 * 10 9 8 37 37 H 0.97001 * 120.00516 * 0.02562 * 13 11 10 38 38 H 1.09008 * 109.47351 * 300.27862 * 14 13 11 39 39 H 1.09000 * 109.47180 * 60.27864 * 14 13 11 40 40 H 0.97009 * 119.99737 * 359.97438 * 17 15 14 41 41 H 0.96994 * 120.00246 * 179.97438 * 21 20 18 42 42 H 1.08004 * 119.62769 * 179.74647 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4505 -2.4347 0.0795 6 6 3.5747 -1.1683 -0.0741 7 6 4.3121 -0.4168 0.8338 8 6 5.6926 -0.4251 0.7518 9 6 6.2936 -1.1924 -0.2445 10 7 7.6894 -1.2305 -0.3658 11 6 8.4630 -1.1820 0.7368 12 8 7.9523 -1.0540 1.8328 13 7 9.8029 -1.2755 0.6244 14 6 10.6443 -1.2167 1.8223 15 6 12.0930 -1.3363 1.4249 16 8 12.3931 -1.4591 0.2562 17 7 13.0551 -1.3079 2.3684 18 6 14.3730 -1.4172 2.0070 19 1 14.6403 -1.5265 0.9664 20 6 15.3649 -1.3873 2.9796 21 7 15.0398 -1.2538 4.2458 22 14 17.1606 -1.5370 2.4872 23 1 17.5185 -0.4210 1.5753 24 1 18.0135 -1.4766 3.7012 25 1 17.3774 -2.8320 1.7935 26 6 5.4932 -1.9130 -1.1181 27 7 4.1789 -1.8858 -1.0072 28 1 -0.3634 -0.0974 1.0229 29 1 -0.3634 0.9346 -0.4272 30 1 -0.3633 -0.8373 -0.5959 31 1 1.2236 -2.6589 1.1218 32 1 0.5218 -2.3547 -0.4854 33 1 2.0628 -3.2335 -0.3390 34 1 3.8131 0.1665 1.5935 35 1 6.2909 0.1495 1.4434 36 1 8.0986 -1.2919 -1.2431 37 1 10.2104 -1.3773 -0.2499 38 1 10.4846 -0.2665 2.3322 39 1 10.3821 -2.0365 2.4911 40 1 12.8150 -1.2100 3.3032 41 1 15.7322 -1.2333 4.9248 42 1 5.9511 -2.5068 -1.8955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662858075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:21 Heat of formation + Delta-G solvation = -70.207832 kcal Electronic energy + Delta-G solvation = -27156.744102 eV Core-core repulsion = 22943.705585 eV Total energy + Delta-G solvation = -4213.038518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.24908 -41.41528 -40.35825 -39.80620 -37.08420 -36.27193 -35.76911 -35.40634 -33.39470 -33.28420 -31.73207 -30.02275 -28.86139 -27.74002 -26.40889 -24.73679 -24.47041 -22.18855 -21.41552 -21.00554 -20.15124 -19.86914 -18.83297 -18.66253 -17.90499 -17.57117 -17.35860 -16.93203 -16.64576 -16.38928 -16.23896 -15.89087 -15.77932 -15.59693 -15.18052 -14.91254 -14.76850 -14.34153 -14.13261 -13.98110 -13.81999 -13.68254 -13.55232 -13.53290 -13.10565 -12.90764 -12.87401 -12.46537 -12.13784 -12.01331 -11.67813 -11.55771 -11.17184 -11.06249 -10.78754 -10.56227 -10.34632 -10.10427 -10.05382 -9.09571 -8.50647 -6.00918 -0.15409 0.15087 1.28338 1.38483 1.43321 1.45161 1.54747 1.70585 1.86725 1.94691 2.28213 2.65049 2.92146 3.16739 3.19049 3.49662 3.63907 3.78200 3.87971 3.97443 4.18622 4.22961 4.41132 4.44156 4.45032 4.53895 4.56070 4.62592 4.73502 4.88858 4.96674 5.06658 5.12219 5.21082 5.37283 5.38626 5.72183 5.77285 5.92066 6.08852 6.47894 6.76975 6.81626 6.98006 7.03695 7.29575 7.44896 7.94316 8.65817 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.041556 B = 0.001675 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.633637 B =16709.653604 C =16974.632974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.506 3.494 3 O -0.582 6.582 4 N -0.560 5.560 5 C 0.072 3.928 6 C 0.313 3.687 7 C -0.140 4.140 8 C -0.077 4.077 9 C 0.108 3.892 10 N -0.664 5.664 11 C 0.707 3.293 12 O -0.610 6.610 13 N -0.713 5.713 14 C 0.141 3.859 15 C 0.433 3.567 16 O -0.623 6.623 17 N -0.559 5.559 18 C -0.339 4.339 19 H 0.087 0.913 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.270 1.270 26 C 0.103 3.897 27 N -0.484 5.484 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.428 0.572 37 H 0.414 0.586 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.399 0.601 41 H 0.280 0.720 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.674 -2.983 -8.081 29.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.298 3.702 3 O -0.461 6.461 4 N -0.291 5.291 5 C -0.068 4.068 6 C 0.086 3.914 7 C -0.163 4.163 8 C -0.105 4.105 9 C 0.010 3.990 10 N -0.314 5.314 11 C 0.407 3.593 12 O -0.489 6.489 13 N -0.370 5.370 14 C 0.012 3.988 15 C 0.220 3.780 16 O -0.511 6.511 17 N -0.194 5.194 18 C -0.468 4.468 19 H 0.105 0.895 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.058 4.058 27 N -0.196 5.196 28 H 0.138 0.862 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.268 0.732 37 H 0.253 0.747 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -28.966 -2.892 -8.232 30.251 hybrid contribution 2.039 0.555 0.415 2.154 sum -26.926 -2.338 -7.816 28.135 Atomic orbital electron populations 1.22014 0.86023 1.06774 1.07009 1.22080 0.92912 0.81543 0.73627 1.90753 1.72019 1.32701 1.50619 1.45556 1.02390 1.09552 1.71554 1.22255 0.97932 0.82713 1.03902 1.18320 0.85738 0.95981 0.91409 1.21763 0.93541 1.01332 0.99694 1.21634 0.94185 0.96431 0.98291 1.18617 0.83059 0.97937 0.99434 1.42225 1.03171 1.76614 1.09342 1.15846 0.81349 0.77841 0.84270 1.90911 1.73436 1.58073 1.26528 1.44627 1.03627 1.77338 1.11441 1.20650 0.86372 1.04337 0.87391 1.20383 0.87846 0.83695 0.86068 1.90473 1.83635 1.57634 1.19390 1.41823 1.05672 1.62771 1.09126 1.19709 0.82259 1.49819 0.94994 0.89466 1.26115 1.04526 0.95812 0.94604 1.69669 1.36394 1.48827 1.00632 0.84930 0.76243 0.79062 0.77768 1.19554 1.19742 1.19467 1.22773 0.87091 0.96315 0.99608 1.67205 1.11449 1.21433 1.19473 0.86172 0.88540 0.86510 0.90166 0.87105 0.90568 0.84967 0.84337 0.73210 0.74718 0.88678 0.88613 0.76676 0.91088 0.78511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.57 71.24 0.68 -0.31 16 2 C 0.51 9.31 7.58 87.66 0.66 9.97 16 3 O -0.58 -16.69 15.85 -3.05 -0.05 -16.74 16 4 N -0.56 -9.87 3.04 -660.57 -2.01 -11.87 16 5 C 0.07 0.59 10.15 127.77 1.30 1.89 16 6 C 0.31 7.43 6.20 132.87 0.82 8.26 16 7 C -0.14 -3.69 8.78 22.47 0.20 -3.49 16 8 C -0.08 -2.11 8.79 22.56 0.20 -1.91 16 9 C 0.11 2.53 6.31 38.19 0.24 2.78 16 10 N -0.66 -14.51 5.36 -316.75 -1.70 -16.21 16 11 C 0.71 20.81 8.41 179.05 1.51 22.32 16 12 O -0.61 -21.86 13.89 -3.99 -0.06 -21.91 16 13 N -0.71 -21.57 5.53 -482.27 -2.67 -24.24 16 14 C 0.14 4.87 6.15 85.63 0.53 5.39 16 15 C 0.43 19.21 7.85 87.66 0.69 19.90 16 16 O -0.62 -30.91 15.24 -3.05 -0.05 -30.96 16 17 N -0.56 -27.34 5.29 -306.99 -1.62 -28.96 16 18 C -0.34 -18.31 9.68 84.04 0.81 -17.49 16 19 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 20 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 21 N -0.92 -48.05 13.05 21.66 0.28 -47.76 16 22 Si 1.00 41.20 29.55 68.60 2.03 43.23 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 C 0.10 2.03 11.11 84.78 0.94 2.97 16 27 N -0.48 -10.84 9.97 -192.47 -1.92 -12.76 16 28 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 0.04 6.23 -2.39 -0.01 0.02 16 31 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.11 0.16 6.10 -2.39 -0.01 0.14 16 33 H 0.08 0.79 7.71 -2.39 -0.02 0.77 16 34 H 0.13 3.48 7.61 -2.91 -0.02 3.46 16 35 H 0.14 4.25 6.39 -2.91 -0.02 4.23 16 36 H 0.43 6.34 8.84 -92.71 -0.82 5.52 16 37 H 0.41 11.94 7.45 -92.71 -0.69 11.25 16 38 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 39 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.40 18.80 7.90 -92.70 -0.73 18.06 16 41 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -77.41 366.65 0.17 -77.24 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -1.12 Total: 40.70 kcal Atomic # 6 Polarization: 41.19 SS G_CDS: 9.05 Total: 50.24 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -9.63 Total: -141.80 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: -0.15 Total: -69.61 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -77.41 0.17 -77.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662858075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.034 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds