Wall clock time and date at job start Tue Mar 31 2020 18:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35726 * 117.00407 * 2 1 4 4 C 1.39453 * 120.81089 * 180.02562 * 3 2 1 5 5 N 1.31956 * 119.08508 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83363 * 359.97438 * 5 4 3 7 7 C 1.48296 * 119.10838 * 180.02562 * 6 5 4 8 8 O 1.21500 * 120.00415 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.46493 * 119.99875 * 179.97438 * 9 7 6 11 11 C 1.53514 * 114.17020 * 154.99833 * 10 9 7 12 12 N 1.47482 * 87.93039 * 87.81444 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47117 * 59.99412 * 21 19 17 23 23 H 1.48498 * 109.47600 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46756 * 300.00019 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 N 1.32542 * 121.78148 * 0.27855 * 6 5 4 27 27 C 1.31964 * 120.83072 * 359.44259 * 26 6 5 28 28 H 1.09001 * 109.47405 * 300.00645 * 1 2 3 29 29 H 1.09009 * 109.46809 * 60.00714 * 1 2 3 30 30 H 1.09000 * 109.47717 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.45547 * 359.97438 * 4 3 2 32 32 H 0.96998 * 120.00008 * 359.97438 * 9 7 6 33 33 H 1.08998 * 113.25916 * 22.04852 * 10 9 7 34 34 H 1.08994 * 113.47382 * 333.04288 * 11 10 9 35 35 H 1.09003 * 113.47448 * 202.58196 * 11 10 9 36 36 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 37 37 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 38 38 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 39 39 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 40 40 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 41 41 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 42 42 H 1.07999 * 120.45373 * 180.27899 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4367 1.3019 -0.0005 5 7 4.0002 2.4951 0.0000 6 6 3.2611 3.5953 0.0005 7 6 3.9345 4.9166 0.0005 8 8 5.1478 4.9802 0.0005 9 7 3.2004 6.0471 0.0016 10 6 3.8656 7.3523 0.0022 11 6 3.0198 8.4890 -0.5887 12 7 2.4532 8.6951 0.7573 13 6 2.3293 10.1267 1.0627 14 6 1.5290 10.3030 2.3275 15 8 1.1041 9.3316 2.9166 16 7 1.2863 11.5400 2.8044 17 6 0.5587 11.7004 3.9553 18 1 0.1797 10.8355 4.4794 19 6 0.3081 12.9756 4.4466 20 7 0.7689 14.0280 3.8086 21 14 -0.6826 13.1942 6.0151 22 1 0.0072 12.5069 7.1362 23 1 -0.8076 14.6413 6.3242 24 1 -2.0348 12.6080 5.8321 25 6 3.7053 8.1436 1.3078 26 7 1.9366 3.5466 0.0060 27 6 1.3024 2.3894 0.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 4.0447 0.4093 -0.0005 32 1 2.2318 5.9963 0.0019 33 1 4.8878 7.3146 -0.3742 34 1 2.2872 8.1497 -1.3210 35 1 3.6127 9.3319 -0.9440 36 1 1.8237 10.6315 0.2395 37 1 3.3218 10.5565 1.1978 38 1 1.6265 12.3167 2.3334 39 1 0.5942 14.9183 4.1519 40 1 4.4811 8.8943 1.4586 41 1 3.5536 7.5116 2.1828 42 1 0.2229 2.3569 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665160920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:14 Heat of formation + Delta-G solvation = 0.953421 kcal Electronic energy + Delta-G solvation = -27387.551285 eV Core-core repulsion = 23177.598551 eV Total energy + Delta-G solvation = -4209.952734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86675 -40.57267 -39.42825 -38.52716 -37.64315 -34.65252 -33.94594 -33.62075 -31.78347 -31.21381 -29.78530 -28.37052 -25.94928 -25.86271 -25.22892 -24.67619 -23.49651 -21.59630 -19.84951 -19.27161 -18.90835 -18.64400 -18.31665 -17.83851 -16.73227 -16.32853 -16.04252 -15.78932 -15.59090 -15.26630 -15.12081 -14.95453 -14.56652 -14.21980 -14.11994 -14.03537 -13.69266 -13.25582 -13.07566 -12.95660 -12.62604 -12.20273 -12.06028 -11.95594 -11.57443 -11.45626 -11.41457 -11.15641 -11.01962 -10.67164 -10.42631 -10.28643 -10.18639 -9.74497 -9.46517 -9.32519 -9.08429 -8.78663 -8.17786 -7.93177 -6.39011 -3.79660 0.07645 0.50889 2.33619 2.37038 2.63103 3.21591 3.26832 3.31379 3.46079 3.50854 3.65123 3.92349 3.94864 4.06198 4.16375 4.25526 4.43281 4.50254 4.52181 4.65019 4.86735 4.89175 5.03521 5.12170 5.21785 5.39161 5.42372 5.46264 5.60382 5.68543 5.69860 5.73828 6.04314 6.16974 6.28250 6.41421 6.50958 6.53841 7.12438 7.23943 7.57344 7.57946 8.02271 8.08711 8.65333 9.21270 9.57789 10.10519 10.78836 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.002069 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.550371 B =13531.124216 C =14817.472281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.298 6.298 3 C 0.045 3.955 4 C 0.123 3.877 5 N -0.427 5.427 6 C 0.242 3.758 7 C 0.592 3.408 8 O -0.510 6.510 9 N -0.678 5.678 10 C 0.116 3.884 11 C -0.013 4.013 12 N -0.440 5.440 13 C 0.008 3.992 14 C 0.447 3.553 15 O -0.575 6.575 16 N -0.567 5.567 17 C -0.298 4.298 18 H 0.101 0.899 19 C 0.021 3.979 20 N -0.904 5.904 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.008 4.008 26 N -0.451 5.451 27 C 0.066 3.934 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.185 0.815 32 H 0.419 0.581 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -23.027 -12.873 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.208 6.208 3 C -0.007 4.007 4 C -0.047 4.047 5 N -0.142 5.142 6 C -0.026 4.026 7 C 0.373 3.627 8 O -0.382 6.382 9 N -0.330 5.330 10 C 0.010 3.990 11 C -0.143 4.143 12 N -0.162 5.162 13 C -0.124 4.124 14 C 0.232 3.768 15 O -0.458 6.458 16 N -0.205 5.205 17 C -0.427 4.427 18 H 0.119 0.881 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.758 3.242 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.138 4.138 26 N -0.167 5.167 27 C -0.102 4.102 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.202 0.798 32 H 0.257 0.743 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.507 -22.963 -12.216 26.131 hybrid contribution -0.905 0.462 0.401 1.093 sum 1.601 -22.501 -11.815 25.465 Atomic orbital electron populations 1.23298 0.77060 1.05213 1.02179 1.86092 1.22427 1.24828 1.87406 1.21255 0.95259 0.86954 0.97226 1.22902 0.89288 0.96286 0.96223 1.68261 1.39765 0.97549 1.08600 1.22667 0.86107 0.94169 0.99687 1.17051 0.86192 0.81886 0.77554 1.90812 1.12671 1.86237 1.48473 1.45264 1.11323 1.03644 1.72761 1.22040 0.97550 0.81710 0.97743 1.24296 0.97880 0.97116 0.94972 1.68852 1.29935 1.14177 1.03214 1.22511 1.00300 0.90480 0.99145 1.19675 0.85809 0.84153 0.87202 1.90525 1.55331 1.39120 1.60814 1.41866 1.48384 1.06038 1.24198 1.19633 1.28617 0.93630 1.00831 0.88072 1.25246 0.98267 0.94922 0.99591 1.69605 1.46134 0.98504 1.40267 0.85924 0.79989 0.76954 0.81379 1.19959 1.21002 1.19934 1.24384 0.92040 0.98518 0.98879 1.68164 1.10119 1.29151 1.09298 1.23496 1.01505 0.86511 0.98695 0.91738 0.91839 0.87187 0.79819 0.74307 0.86858 0.89096 0.89872 0.89300 0.92061 0.77559 0.91887 0.90218 0.89046 0.80385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.84 101.05 0.99 1.04 16 2 O -0.30 -1.80 10.51 -18.88 -0.20 -2.00 16 3 C 0.04 0.34 6.75 -38.68 -0.26 0.08 16 4 C 0.12 1.08 11.28 -17.05 -0.19 0.89 16 5 N -0.43 -5.32 10.11 -11.03 -0.11 -5.44 16 6 C 0.24 3.16 7.59 -157.04 -1.19 1.97 16 7 C 0.59 8.53 7.85 -12.12 -0.10 8.43 16 8 O -0.51 -8.67 16.45 5.37 0.09 -8.58 16 9 N -0.68 -8.80 5.38 -54.34 -0.29 -9.09 16 10 C 0.12 1.44 4.59 -67.72 -0.31 1.13 16 11 C -0.01 -0.15 7.45 -7.54 -0.06 -0.20 16 12 N -0.44 -7.09 5.82 -246.09 -1.43 -8.53 16 13 C 0.01 0.13 5.30 -4.97 -0.03 0.11 16 14 C 0.45 10.69 7.85 -10.98 -0.09 10.60 16 15 O -0.57 -15.98 16.01 5.55 0.09 -15.90 16 16 N -0.57 -14.52 5.29 -10.96 -0.06 -14.58 16 17 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 21 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C -0.01 -0.12 7.53 -7.54 -0.06 -0.18 16 26 N -0.45 -5.06 9.55 -11.03 -0.11 -5.16 16 27 C 0.07 0.54 10.31 -17.05 -0.18 0.36 16 28 H 0.06 0.13 7.71 -51.93 -0.40 -0.27 16 29 H 0.06 0.10 7.71 -51.92 -0.40 -0.30 16 30 H 0.11 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.42 5.32 8.06 -40.82 -0.33 5.00 16 33 H 0.11 1.34 7.45 -51.93 -0.39 0.95 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 36 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 37 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 38 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.08 1.07 7.42 -51.93 -0.39 0.68 16 41 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.18 0.85 6.47 -52.49 -0.34 0.52 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -36.45 368.49 -7.44 -43.89 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.97 Total: 11.42 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: -1.70 Total: 16.18 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.28 Total: -66.81 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.02 Total: -26.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.45 -7.44 -43.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665160920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.844 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds