Wall clock time and date at job start Tue Mar 31 2020 18:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35726 * 117.00407 * 2 1 4 4 C 1.39453 * 120.81089 * 180.02562 * 3 2 1 5 5 N 1.31956 * 119.08508 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83363 * 359.97438 * 5 4 3 7 7 C 1.48296 * 119.10838 * 180.02562 * 6 5 4 8 8 O 1.21500 * 120.00415 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.46493 * 119.99875 * 179.97438 * 9 7 6 11 11 C 1.53514 * 114.17020 * 154.99833 * 10 9 7 12 12 N 1.47482 * 87.93039 * 87.81444 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31417 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47117 * 59.99412 * 21 19 17 23 23 H 1.48498 * 109.47600 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46756 * 300.00019 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 N 1.32542 * 121.78148 * 0.27855 * 6 5 4 27 27 C 1.31964 * 120.83072 * 359.44259 * 26 6 5 28 28 H 1.09001 * 109.47405 * 300.00645 * 1 2 3 29 29 H 1.09009 * 109.46809 * 60.00714 * 1 2 3 30 30 H 1.09000 * 109.47717 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.45547 * 359.97438 * 4 3 2 32 32 H 0.96998 * 120.00008 * 359.97438 * 9 7 6 33 33 H 1.08998 * 113.25916 * 22.04852 * 10 9 7 34 34 H 1.08994 * 113.47382 * 333.04288 * 11 10 9 35 35 H 1.09003 * 113.47448 * 202.58196 * 11 10 9 36 36 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 37 37 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 38 38 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 39 39 H 0.97000 * 119.99884 * 180.02562 * 20 19 17 40 40 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 41 41 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 42 42 H 1.07999 * 120.45373 * 180.27899 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4367 1.3019 -0.0005 5 7 4.0002 2.4951 0.0000 6 6 3.2611 3.5953 0.0005 7 6 3.9345 4.9166 0.0005 8 8 5.1478 4.9802 0.0005 9 7 3.2004 6.0471 0.0016 10 6 3.8656 7.3523 0.0022 11 6 3.0198 8.4890 -0.5887 12 7 2.4532 8.6951 0.7573 13 6 2.3293 10.1267 1.0627 14 6 1.5290 10.3030 2.3275 15 8 1.1041 9.3316 2.9166 16 7 1.2863 11.5400 2.8044 17 6 0.5587 11.7004 3.9553 18 1 0.1797 10.8355 4.4794 19 6 0.3081 12.9756 4.4466 20 7 0.7689 14.0280 3.8086 21 14 -0.6826 13.1942 6.0151 22 1 0.0072 12.5069 7.1362 23 1 -0.8076 14.6413 6.3242 24 1 -2.0348 12.6080 5.8321 25 6 3.7053 8.1436 1.3078 26 7 1.9366 3.5466 0.0060 27 6 1.3024 2.3894 0.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 4.0447 0.4093 -0.0005 32 1 2.2318 5.9963 0.0019 33 1 4.8878 7.3146 -0.3742 34 1 2.2872 8.1497 -1.3210 35 1 3.6127 9.3319 -0.9440 36 1 1.8237 10.6315 0.2395 37 1 3.3218 10.5565 1.1978 38 1 1.6265 12.3167 2.3334 39 1 0.5942 14.9183 4.1519 40 1 4.4811 8.8943 1.4586 41 1 3.5536 7.5116 2.1828 42 1 0.2229 2.3569 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665160920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:13 Heat of formation + Delta-G solvation = -31.294030 kcal Electronic energy + Delta-G solvation = -27388.949639 eV Core-core repulsion = 23177.598551 eV Total energy + Delta-G solvation = -4211.351088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.60938 -41.66837 -40.34679 -39.64244 -39.17906 -35.95517 -35.51078 -34.69143 -33.27034 -32.50826 -31.05883 -28.80631 -27.44422 -26.94074 -26.23193 -25.57964 -24.81148 -22.53221 -21.22895 -20.74267 -19.93270 -19.66808 -19.27574 -19.06631 -17.78226 -17.39970 -17.25590 -16.83034 -16.62317 -16.54594 -16.21259 -16.19859 -15.68020 -15.55210 -15.23297 -15.04365 -14.74421 -14.69537 -14.47494 -13.72884 -13.64868 -13.49084 -13.46525 -12.99128 -12.62599 -12.56884 -12.47972 -12.45178 -12.32228 -12.24002 -12.11163 -11.83877 -11.48734 -11.38184 -10.49677 -10.37563 -10.23675 -9.99675 -9.86670 -9.70783 -8.45690 -5.94186 -0.70656 -0.16456 1.39423 1.40758 1.41915 1.51756 1.59614 1.97282 2.08422 2.29083 2.62028 2.73537 2.85642 3.02075 3.20527 3.22767 3.34040 3.54052 3.60801 3.77980 3.85244 4.17594 4.30058 4.31680 4.37162 4.42460 4.48319 4.54675 4.56097 4.62974 4.74841 4.77027 4.81401 4.86082 5.34417 5.38114 5.41311 5.53718 5.87440 5.95279 6.07757 6.26761 6.62610 6.72426 6.99054 7.14556 7.58817 8.15886 8.71467 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.002069 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.550371 B =13531.124216 C =14817.472281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.299 6.299 3 C 0.066 3.934 4 C 0.112 3.888 5 N -0.455 5.455 6 C 0.213 3.787 7 C 0.590 3.410 8 O -0.546 6.546 9 N -0.673 5.673 10 C 0.122 3.878 11 C 0.004 3.996 12 N -0.471 5.471 13 C 0.021 3.979 14 C 0.441 3.559 15 O -0.620 6.620 16 N -0.576 5.576 17 C -0.333 4.333 18 H 0.075 0.925 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.992 3.008 22 H -0.274 1.274 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.013 4.013 26 N -0.462 5.462 27 C 0.061 3.939 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.211 0.789 32 H 0.420 0.580 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.181 -23.616 -13.948 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.208 6.208 3 C 0.014 3.986 4 C -0.056 4.056 5 N -0.170 5.170 6 C -0.055 4.055 7 C 0.373 3.627 8 O -0.421 6.421 9 N -0.324 5.324 10 C 0.016 3.984 11 C -0.125 4.125 12 N -0.194 5.194 13 C -0.111 4.111 14 C 0.228 3.772 15 O -0.506 6.506 16 N -0.214 5.214 17 C -0.462 4.462 18 H 0.093 0.907 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.143 4.143 26 N -0.179 5.179 27 C -0.107 4.107 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.149 0.851 31 H 0.228 0.772 32 H 0.258 0.742 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.610 -23.545 -13.323 27.100 hybrid contribution -0.738 0.444 0.724 1.125 sum 0.872 -23.100 -12.598 26.327 Atomic orbital electron populations 1.23673 0.74920 1.07058 1.03310 1.86115 1.24545 1.23706 1.86473 1.21208 0.94956 0.87517 0.94964 1.23350 0.90457 0.95979 0.95855 1.68194 1.40819 0.98487 1.09544 1.22315 0.86873 0.93689 1.02589 1.17349 0.85911 0.82775 0.76682 1.90769 1.14042 1.86913 1.50409 1.45281 1.11292 1.03738 1.72081 1.22039 0.98360 0.81626 0.96391 1.24347 0.97926 0.97314 0.92908 1.68803 1.31278 1.13210 1.06124 1.22408 1.00496 0.92086 0.96064 1.20879 0.84926 0.82827 0.88538 1.90491 1.57027 1.40396 1.62698 1.41942 1.48618 1.06965 1.23902 1.19582 1.30666 0.93471 1.02525 0.90666 1.26015 0.98767 0.94217 1.02346 1.69662 1.46317 0.98845 1.41283 0.85012 0.78400 0.77532 0.77526 1.19910 1.19367 1.19712 1.24441 0.92195 0.99006 0.98688 1.68128 1.09381 1.30689 1.09675 1.24057 1.02943 0.85813 0.97844 0.90864 0.90403 0.85135 0.77222 0.74201 0.85878 0.87751 0.86753 0.86775 0.89490 0.76963 0.91327 0.88595 0.92405 0.77128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.84 113.37 1.12 1.12 16 2 O -0.30 -2.87 10.51 -90.49 -0.95 -3.82 16 3 C 0.07 0.91 6.75 22.85 0.15 1.06 16 4 C 0.11 1.91 11.28 84.97 0.96 2.87 16 5 N -0.46 -11.57 10.11 -188.80 -1.91 -13.48 16 6 C 0.21 5.70 7.59 137.56 1.04 6.74 16 7 C 0.59 17.61 7.85 86.92 0.68 18.29 16 8 O -0.55 -19.31 16.45 -3.72 -0.06 -19.38 16 9 N -0.67 -17.68 5.38 -444.13 -2.39 -20.07 16 10 C 0.12 2.94 4.59 45.45 0.21 3.15 16 11 C 0.00 0.08 7.45 83.58 0.62 0.70 16 12 N -0.47 -14.72 5.82 -932.48 -5.43 -20.14 16 13 C 0.02 0.70 5.30 85.56 0.45 1.15 16 14 C 0.44 21.32 7.85 87.66 0.69 22.01 16 15 O -0.62 -35.58 16.01 -3.07 -0.05 -35.63 16 16 N -0.58 -29.88 5.29 -306.98 -1.62 -31.50 16 17 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 20 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 21 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 C -0.01 -0.38 7.53 83.58 0.63 0.25 16 26 N -0.46 -10.28 9.55 -188.80 -1.80 -12.08 16 27 C 0.06 0.91 10.31 84.96 0.88 1.78 16 28 H 0.07 0.08 7.71 -2.39 -0.02 0.06 16 29 H 0.08 0.00 7.71 -2.38 -0.02 -0.02 16 30 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.42 10.79 8.06 -92.71 -0.75 10.05 16 33 H 0.12 2.79 7.45 -2.39 -0.02 2.77 16 34 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.11 1.73 7.91 -2.39 -0.02 1.72 16 36 H 0.11 3.23 8.08 -2.39 -0.02 3.22 16 37 H 0.09 2.46 7.30 -2.39 -0.02 2.45 16 38 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 39 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 40 H 0.10 2.47 7.42 -2.39 -0.02 2.45 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.21 1.47 6.47 -2.91 -0.02 1.45 16 Total: -1.00 -82.26 368.49 -3.57 -85.83 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.38 Total: 33.93 kcal Atomic # 6 Polarization: 31.77 SS G_CDS: 8.71 Total: 40.48 kcal Atomic # 7 Polarization: -134.05 SS G_CDS: -12.87 Total: -146.92 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: -1.06 Total: -58.82 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -82.26 -3.57 -85.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665160920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.535 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds